Spg019943 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg019943
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein GL2-INTERACTING REPRESSOR 2
Locationscaffold5: 30239372 .. 30239617 (-)
RNA-Seq ExpressionSpg019943
SyntenySpg019943
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGAAACTTCAACAATCCAAAGTCGGAACCCCAAGATTTGTCGTTGGCGGTGTCTAACTCGACGACCGAAGATGCTACGACGTCGGCCATGGTGCTGTTGGGGTGCACTCGATGCCTCATCTACGTCATGTCGTCTAAGTTAGATCTCAAGTGTCCCAAATGCAACAACACCACGCTGCTTGATTTCTTCAATTTGGAAGAACAAGCATCATCATCTCGGAGAAATCACGTTGCTAAATGA

mRNA sequence

ATGGGTCGAAACTTCAACAATCCAAAGTCGGAACCCCAAGATTTGTCGTTGGCGGTGTCTAACTCGACGACCGAAGATGCTACGACGTCGGCCATGGTGCTGTTGGGGTGCACTCGATGCCTCATCTACGTCATGTCGTCTAAGTTAGATCTCAAGTGTCCCAAATGCAACAACACCACGCTGCTTGATTTCTTCAATTTGGAAGAACAAGCATCATCATCTCGGAGAAATCACGTTGCTAAATGA

Coding sequence (CDS)

ATGGGTCGAAACTTCAACAATCCAAAGTCGGAACCCCAAGATTTGTCGTTGGCGGTGTCTAACTCGACGACCGAAGATGCTACGACGTCGGCCATGGTGCTGTTGGGGTGCACTCGATGCCTCATCTACGTCATGTCGTCTAAGTTAGATCTCAAGTGTCCCAAATGCAACAACACCACGCTGCTTGATTTCTTCAATTTGGAAGAACAAGCATCATCATCTCGGAGAAATCACGTTGCTAAATGA

Protein sequence

MGRNFNNPKSEPQDLSLAVSNSTTEDATTSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFNLEEQASSSRRNHVAK
Homology
BLAST of Spg019943 vs. NCBI nr
Match: KAG6583700.1 (hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019351.1 hypothetical protein SDJN02_18311 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.8 bits (216), Expect = 4.6e-14
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 20 SNSTTEDATTSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFNLEEQAS 73
          S+S TEDATTS MVLLGCT+CL+YVMSSK DLKCPKCNNTTLLD  NL  QAS
Sbjct: 18 SSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLANQAS 70

BLAST of Spg019943 vs. NCBI nr
Match: XP_039002217.1 (uncharacterized protein LOC120128632 [Hibiscus syriacus] >KAE8702514.1 hypothetical protein F3Y22_tig00110482pilonHSYRG00220 [Hibiscus syriacus])

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-07
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 14  DLSLAVSNSTTEDATTSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFN 67
           D++ AV  +++ DAT+  MVL+GC RCLIYVM S+ D KCPKCN+T LLDF N
Sbjct: 49  DMTDAVGYASSPDATSFPMVLVGCPRCLIYVMLSEDDPKCPKCNSTVLLDFLN 101

BLAST of Spg019943 vs. NCBI nr
Match: TYH76956.1 (hypothetical protein ES332_D04G121400v1 [Gossypium tomentosum])

HSP 1 Score: 63.5 bits (153), Expect = 9.4e-07
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 0

Query: 7   NPKSEPQDLSLAVSNSTTEDATTSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFN 66
           +P S      +     ++ +ATT++MVLLGC RCL+YVM S+ D KCPKC +T LLDF N
Sbjct: 37  SPPSSCVSSEMEYDTGSSSEATTTSMVLLGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLN 96

Query: 67  LEEQASSSR 76
               A+S++
Sbjct: 97  DTATAASTK 105

BLAST of Spg019943 vs. NCBI nr
Match: TKY67036.1 (hypothetical protein E2542_SST09927 [Spatholobus suberectus])

HSP 1 Score: 63.5 bits (153), Expect = 9.4e-07
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 0

Query: 10  SEPQDLSLAVSNSTTEDATTSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFNLEE 69
           S P  +    S+  + +  T AM+L+GC RCL+YVM S++D KCPKC +T LLDF N EE
Sbjct: 36  SSPLSVQSVESSCLSSEEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEE 95

Query: 70  QASSS 75
               S
Sbjct: 96  NTKKS 100

BLAST of Spg019943 vs. NCBI nr
Match: XP_004506211.1 (uncharacterized protein LOC101502581 [Cicer arietinum])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 29  TSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFNLEEQAS 73
           T AM+L+GCTRCL+YVM  ++D KCPKC +T LLDF N EE  S
Sbjct: 60  TKAMLLVGCTRCLMYVMLPEIDPKCPKCKSTVLLDFLNNEENTS 103

BLAST of Spg019943 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.8e-08
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 29  TSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFNLEEQASSSRRNHVA 81
           T++MVL+GC RCL+YVM S+ D KCPKC +T LLDF  L E A+++  N  A
Sbjct: 63  TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF--LHENATNANANAAA 112

BLAST of Spg019943 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-07
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 9  KSEPQDLSLAVSNSTT--EDATTSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFN 68
          +S     S  VS+ T   E+ T ++MVL+GC RCL+YVM S  D KCPKC +T LLDF  
Sbjct: 35 RSNTTSPSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDF-- 94

Query: 69 LEEQA 72
          L+E A
Sbjct: 95 LQENA 97

BLAST of Spg019943 vs. ExPASy TrEMBL
Match: A0A6A3AD94 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110482pilonHSYRG00220 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.1e-08
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 14  DLSLAVSNSTTEDATTSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFN 67
           D++ AV  +++ DAT+  MVL+GC RCLIYVM S+ D KCPKCN+T LLDF N
Sbjct: 49  DMTDAVGYASSPDATSFPMVLVGCPRCLIYVMLSEDDPKCPKCNSTVLLDFLN 101

BLAST of Spg019943 vs. ExPASy TrEMBL
Match: A0A5D2LD87 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G121400v1 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-07
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 0

Query: 7   NPKSEPQDLSLAVSNSTTEDATTSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFN 66
           +P S      +     ++ +ATT++MVLLGC RCL+YVM S+ D KCPKC +T LLDF N
Sbjct: 37  SPPSSCVSSEMEYDTGSSSEATTTSMVLLGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLN 96

Query: 67  LEEQASSSR 76
               A+S++
Sbjct: 97  DTATAASTK 105

BLAST of Spg019943 vs. ExPASy TrEMBL
Match: A0A1S2YKZ1 (uncharacterized protein LOC101502581 OS=Cicer arietinum OX=3827 GN=LOC101502581 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.7e-07
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 29  TSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFNLEEQAS 73
           T AM+L+GCTRCL+YVM  ++D KCPKC +T LLDF N EE  S
Sbjct: 60  TKAMLLVGCTRCLMYVMLPEIDPKCPKCKSTVLLDFLNNEENTS 103

BLAST of Spg019943 vs. ExPASy TrEMBL
Match: A0A7J9CEH7 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_009299 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 23  TTEDATTSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFNLEEQASSSR 76
           ++ +ATT++MVL+GC RCL+YVM S+ D KCPKC +T LLDF N    A+S++
Sbjct: 53  SSSEATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLNDTATAASTK 105

BLAST of Spg019943 vs. ExPASy TrEMBL
Match: A0A0B2QF51 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_030106 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 16  SLAVSNSTTEDATTSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFNLEEQASSSR 75
           SL  S  ++E   T AM+L+GC RCL+YVM S++D KCPKC +T LLDF N EE  ++ +
Sbjct: 47  SLESSCVSSEAEETRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENNNTKK 106

BLAST of Spg019943 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 6.3e-09
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 29  TSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFNLEEQASSSRRNHVA 81
           T++MVL+GC RCL+YVM S+ D KCPKC +T LLDF  L E A+++  N  A
Sbjct: 63  TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF--LHENATNANANAAA 112

BLAST of Spg019943 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-08
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 9  KSEPQDLSLAVSNSTT--EDATTSAMVLLGCTRCLIYVMSSKLDLKCPKCNNTTLLDFFN 68
          +S     S  VS+ T   E+ T ++MVL+GC RCL+YVM S  D KCPKC +T LLDF  
Sbjct: 35 RSNTTSPSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDF-- 94

Query: 69 LEEQA 72
          L+E A
Sbjct: 95 LQENA 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6583700.14.6e-1481.13hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_039002217.11.9e-0760.38uncharacterized protein LOC120128632 [Hibiscus syriacus] >KAE8702514.1 hypotheti... [more]
TYH76956.19.4e-0746.38hypothetical protein ES332_D04G121400v1 [Gossypium tomentosum][more]
TKY67036.19.4e-0747.69hypothetical protein E2542_SST09927 [Spatholobus suberectus][more]
XP_004506211.11.6e-0663.64uncharacterized protein LOC101502581 [Cicer arietinum][more]
Match NameE-valueIdentityDescription
Q9FNI18.8e-0855.77Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1... [more]
Q9SRN43.3e-0750.77Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1... [more]
Match NameE-valueIdentityDescription
A0A6A3AD949.1e-0860.38Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110482pilon... [more]
A0A5D2LD874.5e-0746.38Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G121400v1 P... [more]
A0A1S2YKZ17.7e-0763.64uncharacterized protein LOC101502581 OS=Cicer arietinum OX=3827 GN=LOC101502581 ... [more]
A0A7J9CEH71.0e-0654.72Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_009299 PE=4 ... [more]
A0A0B2QF511.3e-0651.67Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_030106 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G06270.16.3e-0955.77unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G11600.12.4e-0850.77unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR33177:SF51GB|AAF02129.1coord: 17..71
NoneNo IPR availablePANTHERPTHR33177PUTATIVE-RELATEDcoord: 17..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg019943.1Spg019943.1mRNA