Spg019760 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg019760
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Locationscaffold5: 33874041 .. 33876648 (+)
RNA-Seq ExpressionSpg019760
SyntenySpg019760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCCTGTGGCTGTGGTGGTGGTGGTTGCGATTGTTGTGGTTGATCTTGATTTTGCGAGAGCCTCCGCACCACCGACGAGGCTCCCCGTGGAGGAGCGGGCTTCGACACACAGCTTCCTATCTTGGCTAATTATGAGTGTGAAAAACTACAGTAGATGGAAATCCAAATCCAAGGGTTTTGTGCTGCTCGCTGTCGTCCTTCTATGGACCAGATTTTTGGGCTTTACACAGACGACGGTGAAAAGATCAGAGGTGCACAATTTCACCACTTTCTTCAATCTTCCCCCTCTTTTTCTTTTTTTTTTTTCCTTTTTATTATTATTTTTTTCATGTTCCTATAAGAATTAGGAAAATGTCGCAATTTGAATTTCAGAATAATTTGGGTATGAATTTATGAATTTTTTTTTTATAAAATTAAATAGATGGAGGTCAGCTAAACTATCTGGTTTTAAAATAAACAAATATTGTCCCACACTAACTCATCTCTTTTTTGCAGACGACAATCTTGTTTTTCTTAAAGCTAAGGAGTCGGTCTTATGTACTTTCAAGCAAATCCTGAAACAATACGAGGGAGCCTCAGGCCAAACAATCAACCTTGACAAGTCCATCTTCATGGCGAGCAAAAATGTTAAGGAGGAGACTCTGGCTAAGTGTGAGGCAGCTCTCGGGATCAAGAGATCGAGTTCGTTAGGCCAGTATTTGGGGATGCCATCTCAAACAGGAAGGAATAAAGGAGCGGTTTTCAAAAGAATCAAAGACAGGGTTGAGAAAATTCTTCAAGGATGGAAGGGAAATCTTTTCTCCATGGGAGGAAAAGAAGTTCTCATAAAGGTTGTTGCTCAAGCGATTCCGGTCTACACCATGAGTTGTTTTCGATTACCCTCTAATATTTGTTCCTTTATTGACAGGTTATGCGCTAAATTTTGGTGGGGATCCAACGGAAACAAAGACAAAGCCCATTGGATGAGTTGGAAGAAAATGTGCCTAAACAAGAGCCAAAGAGGAATGGGATTTCACTATCTAGTTGCGTTCAACCAAGCTATGCTTGCTAAACAAAGCTGGAGGCTGATAAGGAACCCTAACAGCCTCTTGTTCAAGATTCTAAGAGGGCGATACTTCAAAGGGAGGAATTTCCTTGAAGCATCTTTAGGCAACTCTCCCTCCATCACCTGGAGAAGCATCATTTGGGGTCGTGACCTGTTCCTAAAGGGGTACCGCTGGAGAATAGGAAATGGAGCCCAAATCTTCATTGACAAGGATCCTTGGATTTCCCGAGAGGGCAATCCTAGAGCCTTCTCCATCCCAAACTCTCCATCGGGCCTAAGAGTAAAAGACTTCCTAGATGAAAACAACAAATGGAAAGAAGGCTACATCAAGGAAGTTTTCTCTCCCCAAGATGCGACCGATATCCTCAATATGCCAACTGGGAGTAAGGATTTGAAAGATGAAATAGTTTGGAACCTTGACAAAAAAGGAATTTTCTCTGTGAAAAGTGCCTATCGTCTAGCCACGAAGGAGTTATCCACTAATGAAGCTTCCCTATCCAACCCCTCAAAGGAAGCAACTTTCTGGGATAAGTTATGGAAGGCCAATGTTCTCCCAAGATCCAAAGTGTGTGTGTGGAGAATTGTAAACGACATCATCCCCACAAAGACTAATATTCTCAAAAAGGGAGTTGACCTTCTTCCCTGATGCTCTTTTTGTGGAAAAAATAAGGAAATGACCCCCATCTTATATGGGAGTGCAAATTTGTTAGATCATTATGGTCCTGTTTTGTTCCTAGCTCTCTAATTCTGTGGTCTTTGTGTAGGGATAATTGGCAACCAAAGGATTACTGGGGATGGATGGCTTCTAATCTTGGCAAAGAAGACATTGACAGAAGTATTATTATCATGTGGCAAATCTGGGAATTCAGAAACAGAGCAGATCACTACAATATCCCAGCATCATCAAAATTATTCCAAAACTCCATTGACACAAGGCTAAAAGAATGGGAATCCTCTTACCTCAAGACCCATTCTCCTAAAAGGCCAAGGAATCCCGCGAGTCAAGCTTAATGGGAGAAGGATGGAAACTCAATTCAGACGCAGCCTGGTTCGAGAAAGAAGGATGCGGTGGTCTCGGATGGCTCGTGCATGACTCGGAGGGTTCCCTGATCTGTTTCGGAATGAAGCAAGTTAATCAAAAATGGGCTATCAAGAATTTGGAAGCTTGCGCTATGCTAGAAGGTATCAAGGAAGTTTCAGATACCTGTAATCGCCTCGGTATTCGCCTGGAAGTCGAGACAGATGCTATTGAGGTCGTTAAGGCCATCAACCGCGAGTCGGAAGATTTGTCCGACCTGAAGATCTTCACTGATGAAATCAAGGCTCTTGCTACCCGAGCCTTCTCCATGAACTTTAGCTATTGTAATCGTTTTTTGAATACAGCCGCGCACTGTGTTGCGAGAAGCGCTGCCGGCAGGTCCTTGTCTTCTCCGGCGAAGTCTCCTGGCCAGTCGTCTTCTTCGCGGGAAAGGGAGGATTGTTTTTGGGCTCCCAATATTCCGATTTGGGCTTTCCCTCTCATTAATGGGGGTGGTTGTACTGGTCATTACTGTTTTTAA

mRNA sequence

ATGCCGCCTGTGGCTGTGGTGGTGGTGGTTGCGATTGTTGTGGTTGATCTTGATTTTGCGAGAGCCTCCGCACCACCGACGAGGCTCCCCGTGGAGGAGCGGGCTTCGACACACAGCTTCCTATCTTGGCTAATTATGAGTGTGAAAAACTACAGTAGATGGAAATCCAAATCCAAGGGTTTTGTGCTGCTCGCTGTCGTCCTTCTATGGACCAGATTTTTGGGCTTTACACAGACGACGGTGAAAAGATCAGAGGCCAAGGAATCCCGCGAGTCAAGCTTAATGGGAGAAGGATGGAAACTCAATTCAGACGCAGCCTGGTTCGAGAAAGAAGGATGCGGTGGTCTCGGATGGCTCGTGCATGACTCGGAGGGTTCCCTGATCTGTTTCGGAATGAAGCAAGTTAATCAAAAATGGGCTATCAAGAATTTGGAAGCTTGCGCTATGCTAGAAGGTATCAAGGAAGTTTCAGATACCTGTAATCGCCTCGGTATTCGCCTGGAAGTCGAGACAGATGCTATTGAGGTCGTTAAGGCCATCAACCGCGAGTCGGAAGATTTGTCCGACCTGAAGATCTTCACTGATGAAATCAAGGCTCTTGCTACCCGAGCCTTCTCCATGAACTTTAGCTATTGTAATCGTTTTTTGAATACAGCCGCGCACTGTGTTGCGAGAAGCGCTGCCGGCAGGTCCTTGTCTTCTCCGGCGAAGTCTCCTGGCCAGTCGTCTTCTTCGCGGGAAAGGGAGGATTGTTTTTGGGCTCCCAATATTCCGATTTGGGCTTTCCCTCTCATTAATGGGGGTGGTTGTACTGGTCATTACTGTTTTTAA

Coding sequence (CDS)

ATGCCGCCTGTGGCTGTGGTGGTGGTGGTTGCGATTGTTGTGGTTGATCTTGATTTTGCGAGAGCCTCCGCACCACCGACGAGGCTCCCCGTGGAGGAGCGGGCTTCGACACACAGCTTCCTATCTTGGCTAATTATGAGTGTGAAAAACTACAGTAGATGGAAATCCAAATCCAAGGGTTTTGTGCTGCTCGCTGTCGTCCTTCTATGGACCAGATTTTTGGGCTTTACACAGACGACGGTGAAAAGATCAGAGGCCAAGGAATCCCGCGAGTCAAGCTTAATGGGAGAAGGATGGAAACTCAATTCAGACGCAGCCTGGTTCGAGAAAGAAGGATGCGGTGGTCTCGGATGGCTCGTGCATGACTCGGAGGGTTCCCTGATCTGTTTCGGAATGAAGCAAGTTAATCAAAAATGGGCTATCAAGAATTTGGAAGCTTGCGCTATGCTAGAAGGTATCAAGGAAGTTTCAGATACCTGTAATCGCCTCGGTATTCGCCTGGAAGTCGAGACAGATGCTATTGAGGTCGTTAAGGCCATCAACCGCGAGTCGGAAGATTTGTCCGACCTGAAGATCTTCACTGATGAAATCAAGGCTCTTGCTACCCGAGCCTTCTCCATGAACTTTAGCTATTGTAATCGTTTTTTGAATACAGCCGCGCACTGTGTTGCGAGAAGCGCTGCCGGCAGGTCCTTGTCTTCTCCGGCGAAGTCTCCTGGCCAGTCGTCTTCTTCGCGGGAAAGGGAGGATTGTTTTTGGGCTCCCAATATTCCGATTTGGGCTTTCCCTCTCATTAATGGGGGTGGTTGTACTGGTCATTACTGTTTTTAA

Protein sequence

MPPVAVVVVVAIVVVDLDFARASAPPTRLPVEERASTHSFLSWLIMSVKNYSRWKSKSKGFVLLAVVLLWTRFLGFTQTTVKRSEAKESRESSLMGEGWKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGIRLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLNTAAHCVARSAAGRSLSSPAKSPGQSSSSREREDCFWAPNIPIWAFPLINGGGCTGHYCF
Homology
BLAST of Spg019760 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-10
Identity = 57/196 (29.08%), Postives = 99/196 (50.51%), Query Frame = 0

Query: 42  SWLIMSVKNYSRWKSKSKGFVLLAVVLLWTRFL--GFTQTTVKRSEAKESRESSLMGEG- 101
           SW+I + +NY  ++ +   F  +   L  T+F+     Q+    S   ++  + L  E  
Sbjct: 17  SWVIWNHRNYVIFRGEHSSFSTMIQQL--TKFVTESSYQSETSLSMLHKTLNNKLKWEPP 76

Query: 102 ----WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIK 161
               W LN+DA+W +    GG+GW++   +G ++  G + V     +K LEA A+LEG++
Sbjct: 77  PMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLR 136

Query: 162 EVSDTCNRLGI--RLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYC 221
            +++    LG+   L +ETD+ EV   +NR+ EDL+      +EI  L      + F+  
Sbjct: 137 NLTN----LGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKV 196

Query: 222 NRFLNTAAHCVARSAA 229
            R  N  AH +A+ A+
Sbjct: 197 GRETNGCAHSLAQRAS 206

BLAST of Spg019760 vs. NCBI nr
Match: KAG6599977.1 (hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-08
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 0

Query: 100 KLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDT 159
           KLNS A+W E+ G GG+ W++HDS GS IC   K++ +KW +K LE  AM+EG+K     
Sbjct: 7   KLNSYASWSEEAGKGGVSWVIHDSLGSSICIECKELRRKWLVKMLEGKAMIEGLK----- 66

Query: 160 CNRLGIRLEVETD-----AIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNF 210
              L IR  V         +E+ + +N    DL +L    DEI  L   A  ++F
Sbjct: 67  -TYLLIRETVSYSHRPIIFLELARILNNTHMDLIELSNVVDEIFDLELLAGIISF 115

BLAST of Spg019760 vs. NCBI nr
Match: XP_021763631.1 (uncharacterized protein LOC110728264 [Chenopodium quinoa])

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-08
Identity = 51/188 (27.13%), Postives = 88/188 (46.81%), Query Frame = 0

Query: 79  TTVKRSEAKESRESSLMGEGWKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQK 138
           T+++RS              +KLN+DA+   K+  GGLG +V D+ G ++    K +N  
Sbjct: 115 TSIERSSEVTGLWIPPTSSRYKLNTDAS-ISKDRRGGLGMVVRDNIGDVMMTWGKSLNGT 174

Query: 139 WAIKNLEACAMLEGIKEVSDTCNRLGIRLEVETDAIEVVKAINRESEDLSDLKIFTDEIK 198
             I  +EA A+L G++ V D   R   +LEV +D ++V++ +N    + S  ++   +I 
Sbjct: 175 GIISEIEAVALLFGMRAVFDAGFR---KLEVSSDCLQVIELLNGSKHENSPTQLIVTDIL 234

Query: 199 ALATRAFSMNFSYCNRFLNTAAHCVARSAAGRSLSSPAKSPGQSSSSREREDCFWAPNIP 258
           + A     + FS+C R  N  AH +A  +   S                 E+ FW  + P
Sbjct: 235 SFAYSFDFVCFSFCPRLCNKVAHSMANLSLSLS-----------------EERFWMEDCP 281

Query: 259 IWAFPLIN 267
              +PL++
Sbjct: 295 ASVYPLVD 281

BLAST of Spg019760 vs. NCBI nr
Match: XP_021847414.1 (uncharacterized protein LOC110787151 [Spinacia oleracea])

HSP 1 Score: 65.9 bits (159), Expect = 6.4e-07
Identity = 42/130 (32.31%), Postives = 73/130 (56.15%), Query Frame = 0

Query: 97   EGW-KLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKE 156
            EGW K+N DA    + G  G+G ++ D EG ++   ++Q  +KWA    EA A+L G+  
Sbjct: 1028 EGWYKVNVDAGLLGEVG-SGMGAVIRDDEGGVVSCAVRQGCEKWATNVAEAKAVLFGM-- 1087

Query: 157  VSDTCNRLGI-RLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNR 216
              + C  LG+ R+ VE+D + V++A+ RE+   S+  +  ++I A  +   ++ +S+  R
Sbjct: 1088 --ELCAELGMQRVVVESDCLGVIQALRREASGCSEFWLVVEDIMAFCSNFLNVVWSFVKR 1147

Query: 217  FLNTAAHCVA 225
              N  AH +A
Sbjct: 1148 SGNKVAHDLA 1152

BLAST of Spg019760 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-06
Identity = 37/139 (26.62%), Postives = 72/139 (51.80%), Query Frame = 0

Query: 99  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEV-S 158
           WKLN+DAAW      GG+GW++ D +G +I    + +  +  I  LE  A+ EG++ +  
Sbjct: 87  WKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQ 146

Query: 159 DTCNRLGIR----LEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCN 218
           + C  +       + +E+D++E +  ++R+ +D +++    +EI  +      ++  + +
Sbjct: 147 EHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHIS 206

Query: 219 RFLNTAAHCVARSAAGRSL 233
           R  N  AH +AR A    L
Sbjct: 207 REANKVAHDLARRAMENDL 225

BLAST of Spg019760 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-10
Identity = 57/196 (29.08%), Postives = 99/196 (50.51%), Query Frame = 0

Query: 42  SWLIMSVKNYSRWKSKSKGFVLLAVVLLWTRFL--GFTQTTVKRSEAKESRESSLMGEG- 101
           SW+I + +NY  ++ +   F  +   L  T+F+     Q+    S   ++  + L  E  
Sbjct: 17  SWVIWNHRNYVIFRGEHSSFSTMIQQL--TKFVTESSYQSETSLSMLHKTLNNKLKWEPP 76

Query: 102 ----WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIK 161
               W LN+DA+W +    GG+GW++   +G ++  G + V     +K LEA A+LEG++
Sbjct: 77  PMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLR 136

Query: 162 EVSDTCNRLGI--RLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYC 221
            +++    LG+   L +ETD+ EV   +NR+ EDL+      +EI  L      + F+  
Sbjct: 137 NLTN----LGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKV 196

Query: 222 NRFLNTAAHCVARSAA 229
            R  N  AH +A+ A+
Sbjct: 197 GRETNGCAHSLAQRAS 206

BLAST of Spg019760 vs. ExPASy TrEMBL
Match: A0A5B7BU49 (RNase H domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_041820 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-07
Identity = 45/127 (35.43%), Postives = 65/127 (51.18%), Query Frame = 0

Query: 99  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSD 158
           +KLN  A+W   E CGG+G ++ D +G +I    KQ+     I   EA A+L G+    D
Sbjct: 60  FKLNVHASWVLGESCGGIGGVIRDWKGEVIGGFAKQIRTCSRIDFAEALAILHGLMFAKD 119

Query: 159 TCNRLGIR-LEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLN 218
               +G++ L VE D + V+ AI    EDLS+L    D IK       S +F +  R  N
Sbjct: 120 ----VGLQDLSVEGDCLSVLIAIESSVEDLSELGHVFDHIKQCRDGFHSCDFGHVRRAAN 179

Query: 219 TAAHCVA 225
           + AH +A
Sbjct: 180 SVAHEIA 182

BLAST of Spg019760 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-07
Identity = 36/134 (26.87%), Postives = 70/134 (52.24%), Query Frame = 0

Query: 99  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSD 158
           WKLN++AAW      GG+GW++ D +G +I    + +  +  I  LE  A+ EG++ +  
Sbjct: 87  WKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQ 146

Query: 159 TCNRLGIRLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLNT 218
              R    + +E+D++E +  ++R+ +D +++    +EI  +      ++  + +R  N 
Sbjct: 147 EHCR---PIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANK 206

Query: 219 AAHCVARSAAGRSL 233
            AH +AR A    L
Sbjct: 207 VAHGLARRAMENDL 217

BLAST of Spg019760 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-07
Identity = 37/139 (26.62%), Postives = 72/139 (51.80%), Query Frame = 0

Query: 99  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEV-S 158
           WKLN+DAAW      GG+GW++ D +G +I    + +  +  I  LE  A+ EG++ +  
Sbjct: 87  WKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQ 146

Query: 159 DTCNRLGIR----LEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCN 218
           + C  +       + +E+D++E +  ++R+ +D +++    +EI  +      ++  + +
Sbjct: 147 EHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHIS 206

Query: 219 RFLNTAAHCVARSAAGRSL 233
           R  N  AH +AR A    L
Sbjct: 207 REANKVAHDLARRAMENDL 225

BLAST of Spg019760 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.1e-07
Identity = 42/130 (32.31%), Postives = 61/130 (46.92%), Query Frame = 0

Query: 99  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSD 158
           WKLN DA W +    GGLGW+V DSEG  I                    M E +K +S 
Sbjct: 86  WKLNVDATWMDSLHAGGLGWIVRDSEGRFI--------------------MAECLKALSQ 145

Query: 159 TCN-RLGIRLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLN 218
           +     GI++E+E+D +EVV  IN+ S  L+++ +  ++I           F +     N
Sbjct: 146 SLTLEAGIKIEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEMESLPIEGFKHLPMKAN 195

Query: 219 TAAHCVARSA 228
             AH +AR A
Sbjct: 206 GVAHGIARRA 195

BLAST of Spg019760 vs. TAIR 10
Match: AT1G52990.1 (thioredoxin family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.9e-04
Identity = 37/129 (28.68%), Postives = 61/129 (47.29%), Query Frame = 0

Query: 100 KLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDT 159
           K N DA+  E +   GLGWL+ +S+G+++  GM +   +   +  E  A++  I+  S  
Sbjct: 49  KCNYDASHHEGDVVSGLGWLIRNSQGTVLECGMGKFQGRMTPEEAECSALIWAIQATS-- 108

Query: 160 CNRLG-IRLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLNT 219
               G  ++  E D   V + IN +S D   LK + D IK+      S  F + +R  N 
Sbjct: 109 --AFGYTKVIFEGDNSNVNRLINTKS-DNPRLKHYLDTIKSWIPSFTSTEFIFTHREQNQ 168

Query: 220 AAHCVARSA 228
            A  + + A
Sbjct: 169 CADTLVKKA 172

BLAST of Spg019760 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 4.2e-04
Identity = 33/128 (25.78%), Postives = 63/128 (49.22%), Query Frame = 0

Query: 100 KLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDT 159
           K N DA+  E+    GLGW++ +S+G++I  GM +   +   +  E   ++  I+     
Sbjct: 114 KCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIWAIQASYGF 173

Query: 160 CNRLGIRLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLNTA 219
            ++   ++  E D   + + IN +S +   L+ F D I++      S+ FS+ +R  N  
Sbjct: 174 GHK---KVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIPSFESIEFSFKHREQNGC 233

Query: 220 AHCVARSA 228
           A  +A+ A
Sbjct: 234 ADFLAKQA 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155262.12.8e-1029.08uncharacterized protein LOC111022403 [Momordica charantia][more]
KAG6599977.11.2e-0838.26hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021763631.13.4e-0827.13uncharacterized protein LOC110728264 [Chenopodium quinoa][more]
XP_021847414.16.4e-0732.31uncharacterized protein LOC110787151 [Spinacia oleracea][more]
XP_022156777.11.4e-0626.62uncharacterized protein LOC111023608 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNV91.4e-1029.08uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5B7BU493.1e-0735.43RNase H domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=... [more]
A0A6J1CP266.9e-0726.87uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DSV16.9e-0726.62uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1D4B69.1e-0732.31uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
AT1G52990.11.9e-0428.68thioredoxin family protein [more]
AT5G65005.14.2e-0425.78Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 102..227
e-value: 2.1E-15
score: 56.7
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 97..229
e-value: 3.8E-9
score: 38.7
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 99..231
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 99..231
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 101..225
e-value: 6.04023E-16
score: 70.4208
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 99..230

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg019760.1Spg019760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity