Spg019664 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg019664
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LINE-1 reverse transcriptase-like
Location	scaffold5: 33394077 .. 33395543 (-)
RNA-Seq Expression	Spg019664
Synteny	Spg019664

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACCCTTTCTGTTCATCATGATTATGGATAGTTTTAGTCGTATGCTTTCTAAAGCCGAAAATGAAGGTCTTATCAAAGGCTTTCGGGTTGGTCATGGCCGGCTATGCATTAGTCATATCCAATTTTCTGACAACACCATTCTTTTTTCTGACCTTACAGATGAATCATACCTTCAGAACCTTTTGAATGTGGTTAGGGACTTCGAAAAGGTTTCTAGACATAACATAAATTTGCATAAATCAGAGATTATTGGTATTAATGTACCCATAGTTGATCTTGAAGAGGTTGAAAATAAATACGGCTTGAAAATGGGTATATGGCCCAACAATTATCTAGGGCTCCCTCTCAACGGTTCTCCTAGAACATTATCCTTTTGGGCTCCTATCATTGAGAAGATTGAGAGAAGACTCTCCTCTTGGGGATCATCATTCATATCTAAAAGAGGTAGACTCACACTCCTCCAAGCGACCTTATCTAACCTCCCGACATATTACCTCTCCTTATTTCTTATTCTCGTTAAGGTGGCGCAGGAGTTGGAAAGACTTTTCAGAAATTTCTTGTGGAAAGGAGGATCAAAAGAGGGAGGTCAACACCTTGTTAGATGGAGTAATATCCTTATATCCTTTGGACCGAGGAAGCCTTGACATTTGATCTATGAGATAAAAATAAATTTCTCTTGGCAAAGTGGATATGGAGATACAAACGGGAGGATAAGGATTTATGGAAGACTCTTGTAAAAGAGAAATATGGCTCATCTACTTTTTTAAATTGGGCATCCTTAGCTACTGCCATGGCCCATGGAAGTCCATTGTTAAGCACCAACATCTTGTAACAAGCCAGATTAGCCACCTTGTTGGCAATGGAGCGTCAACTTTATTCTAGATCGACCCTTGGGTTACCAACCCTCCCTTGGCCACTCGGTATCCCTCTTTATATAGATTCTCACAAAGCAAAAAGGAGACGATTAAAGAGGTTTGGAATTTCGAAATACAACTTTTGGGATCTCAAACTTGGGAGGAATGGGTGACCTTAGCCTTGATCTTGCCCCAATTGTCCTCTCTCATGAGGAAGATTCTTGGAGGTGGAACCTTCACCCTAGTGGACAGTTCTCTACAAAATCTCTTCTATCTGATATGAGCGACTCTAAATGCCTATTAGAGTCATCTTTGACTAAAGGTATTTCGAAGGATAACTATCTCAAGATCAAATTTCTCCTTTGGGAAATATCACATGGAGCTATTAGTACCAAAGATGTCCTTCAGAAACGCATGTCTTATTTGGCTATCTCCCCTGGTTGGTGCTCATTATGCAAGATGGATGATGAAACTCAGAATCACATATTCATCCACTGCTCTTTTGCCTGGCAGTTTTGGAATCGTGTATACCAATATTTTGGCTGGTATTTGACTTTCCCTAGAGATACTAAAGACCTTCATCCTCGTCTTAGCAGAACCTCCTTTTAA

mRNA sequence

ATGTCACCCTTTCTGTTCATCATGATTATGGATAGTTTTAGTCGTATGCTTTCTAAAGCCGAAAATGAAGGTCTTATCAAAGGCTTTCGGGTTGGTCATGGCCGGCTATGCATTAGTCATATCCAATTTTCTGACAACACCATTCTTTTTTCTGACCTTACAGATGAATCATACCTTCAGAACCTTTTGAATGTGGTTAGGGACTTCGAAAAGGTTTCTAGACATAACATAAATTTGCATAAATCAGAGATTATTGGTATTAATGTACCCATAGTTGATCTTGAAGAGGTTGAAAATAAATACGGCTTGAAAATGGGTATATGGCCCAACAATTATCTAGGGCTCCCTCTCAACGGTTCTCCTAGAACATTATCCTTTTGGGCTCCTATCATTGAGAAGATTGAGAGAAGACTCTCCTCTTGGGGATCATCATTCATATCTAAAAGAGGAATGGGTGACCTTAGCCTTGATCTTGCCCCAATTGTCCTCTCTCATGAGGAAGATTCTTGGAGGTGGAACCTTCACCCTAGTGGACAGTTCTCTACAAAATCTCTTCTATCTGATATGAGCGACTCTAAATGCCTATTAGAGTCATCTTTGACTAAAGGTATTTCGAAGGATAACTATCTCAAGATCAAATTTCTCCTTTGGGAAATATCACATGGAGCTATTAGTACCAAAGATGTCCTTCAGAAACGCATGTCTTATTTGGCTATCTCCCCTGGTTGGTGCTCATTATGCAAGATGGATGATGAAACTCAGAATCACATATTCATCCACTGCTCTTTTGCCTGGCAGTTTTGGAATCGTGTATACCAATATTTTGGCTGGTATTTGACTTTCCCTAGAGATACTAAAGACCTTCATCCTCGTCTTAGCAGAACCTCCTTTTAA

Coding sequence (CDS)

ATGTCACCCTTTCTGTTCATCATGATTATGGATAGTTTTAGTCGTATGCTTTCTAAAGCCGAAAATGAAGGTCTTATCAAAGGCTTTCGGGTTGGTCATGGCCGGCTATGCATTAGTCATATCCAATTTTCTGACAACACCATTCTTTTTTCTGACCTTACAGATGAATCATACCTTCAGAACCTTTTGAATGTGGTTAGGGACTTCGAAAAGGTTTCTAGACATAACATAAATTTGCATAAATCAGAGATTATTGGTATTAATGTACCCATAGTTGATCTTGAAGAGGTTGAAAATAAATACGGCTTGAAAATGGGTATATGGCCCAACAATTATCTAGGGCTCCCTCTCAACGGTTCTCCTAGAACATTATCCTTTTGGGCTCCTATCATTGAGAAGATTGAGAGAAGACTCTCCTCTTGGGGATCATCATTCATATCTAAAAGAGGAATGGGTGACCTTAGCCTTGATCTTGCCCCAATTGTCCTCTCTCATGAGGAAGATTCTTGGAGGTGGAACCTTCACCCTAGTGGACAGTTCTCTACAAAATCTCTTCTATCTGATATGAGCGACTCTAAATGCCTATTAGAGTCATCTTTGACTAAAGGTATTTCGAAGGATAACTATCTCAAGATCAAATTTCTCCTTTGGGAAATATCACATGGAGCTATTAGTACCAAAGATGTCCTTCAGAAACGCATGTCTTATTTGGCTATCTCCCCTGGTTGGTGCTCATTATGCAAGATGGATGATGAAACTCAGAATCACATATTCATCCACTGCTCTTTTGCCTGGCAGTTTTGGAATCGTGTATACCAATATTTTGGCTGGTATTTGACTTTCCCTAGAGATACTAAAGACCTTCATCCTCGTCTTAGCAGAACCTCCTTTTAA

Protein sequence

MSPFLFIMIMDSFSRMLSKAENEGLIKGFRVGHGRLCISHIQFSDNTILFSDLTDESYLQNLLNVVRDFEKVSRHNINLHKSEIIGINVPIVDLEEVENKYGLKMGIWPNNYLGLPLNGSPRTLSFWAPIIEKIERRLSSWGSSFISKRGMGDLSLDLAPIVLSHEEDSWRWNLHPSGQFSTKSLLSDMSDSKCLLESSLTKGISKDNYLKIKFLLWEISHGAISTKDVLQKRMSYLAISPGWCSLCKMDDETQNHIFIHCSFAWQFWNRVYQYFGWYLTFPRDTKDLHPRLSRTSF

Homology

[Close]

BLAST of Spg019664 vs. NCBI nr
Match: CAN78744.1 (hypothetical protein VITISV_014186 [Vitis vinifera])

HSP 1 Score: 166.0 bits (419), Expect = 4.9e-37
Identity = 111/343 (32.36%), Postives = 164/343 (47.81%), Query Frame = 0


Query: 1    MSPFLFIMIMDSFSRMLSKAENEGLIKGFRVGHGRLCISHIQFSDNTILFSDLTDESYLQ 60
            +SPFLF ++ D  SRML +AE   +++ FRVG  R+ +SH+QF+D+TI FS+  +E  LQ
Sbjct: 1306 LSPFLFTLVADVLSRMLKRAEERNMMECFRVGRNRIRVSHLQFADDTIFFSNSREEE-LQ 1365

Query: 61   NLLNVVRDFEKVSRHNINLHKSEIIGINVPIVDLEEVENKYGLKMGIWPNNYLGLPLNGS 120
             L +++  F  +SR  +NL+KS I  IN+    L  +      K+  WP  YLGLPL  +
Sbjct: 1366 TLKSLLLVFGHISRLKVNLNKSSIYDINLDQAHLSRLAVMLDCKVSEWPILYLGLPLGRN 1425

Query: 121  PRTLSFWAPIIEKIER-------------------------------------------R 180
            P+   FW P+IE+I R                                           R
Sbjct: 1426 PKACGFWDPMIERISRNGERIRFWEDLWWGDQPLGTQYPRLFRVVMDKNISISSVLGPSR 1485

Query: 181  LSSWGSSF---ISKRGMGDL-----SLD---LAPIVLSHEEDSWRWNLHPSGQFSTKSLL 240
              SW  +F   +S   + DL     SLD   L+P VL    D+  W+L   G FS KS  
Sbjct: 1486 PFSWNLNFRRNLSDSEIEDLEGLMRSLDDLYLSPSVL----DARLWSLSSLGLFSVKSFF 1545

Query: 241  SDMSDSKCLLESSLTKGISKDNY-LKIKFLLWEISHGAISTKDVLQKRMSYLAISPGWCS 289
              +S S    ++  +K +       K+K  +W ++H  ++T D+LQ R  Y A+SP  C 
Sbjct: 1546 LALSQSSGSPQNFPSKFVWNSQVPFKVKSFVWLVAHKKVNTNDMLQVRRPYKALSPDICI 1605

[Close]

BLAST of Spg019664 vs. NCBI nr
Match: RVW21770.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-36
Identity = 109/374 (29.14%), Postives = 165/374 (44.12%), Query Frame = 0


Query: 1    MSPFLFIMIMDSFSRMLSKAENEGLIKGFRVGHGRLCISHIQFSDNTILFSDLTDESYLQ 60
            +SPFLF ++ D  SRML +AE   +++GFRVG  R  +SH+QF+D+TI FS+ T E  LQ
Sbjct: 812  LSPFLFTLVADVLSRMLVRAEERNMLEGFRVGRNRTRVSHLQFADDTIFFSN-TREEDLQ 871

Query: 61   NLLNVVRDFEKVSRHNINLHKSEIIGINVPIVDLEEVENKYGLKMGIWPNNYLGLPLNGS 120
             L +++  F  +S   +NL KS I GIN+    +  +    G K   WP  YLGLPL G+
Sbjct: 872  TLKSLLLAFGHISGLKVNLDKSNIYGINLDHAHISRLAETLGCKASGWPILYLGLPLGGN 931

Query: 121  PRTLSFWAPIIEKIERRLSSWGSSFISKRGMGDLSLDLAPIVLSHEEDSWRWNL------ 180
            PR   FW P+IE+I RRL  W  +++S  G     + L    L+H    W W        
Sbjct: 932  PRAGGFWDPVIERISRRLDGWQKAYLSFGG----RITLIQSCLTHMPWKWLWRYPREGSA 991

Query: 181  ------------HPSG-----------------------QFSTKSLL------------- 240
                        H +G                       +FS+ +               
Sbjct: 992  LWHQVILSIYGSHSNGWDANTIVRWSHRCPWKAISQVFQEFSSFTRFVVGNGERIRFWED 1051

Query: 241  ---------------------SDMSDSKCLLES----SLTKGISKDNYL-------KIKF 289
                                 S++ D + L+ S     L+  +    ++       K++ 
Sbjct: 1052 LCSCPTRPFSWNLNFRRNLSDSEIEDLEGLMRSLDGVHLSPSVFPSKFVWNSQIPFKVQS 1111

[Close]

BLAST of Spg019664 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 5.4e-36
Identity = 110/375 (29.33%), Postives = 168/375 (44.80%), Query Frame = 0


Query: 1   MSPFLFIMIMDSFSRMLSKAENEGLIKGFRVGHGRLCISHIQFSDNTILFSDLTDESYLQ 60
           +SPF+F++ MD  SR+L+   ++  I G       L ++HI F+D+ ++F +  D+ Y+ 
Sbjct: 35  LSPFIFVLAMDYLSRLLNNLADKRKINGVNFS-PNLNLTHILFADDILIFVEDRDD-YVS 94

Query: 61  NLLNVVRDFEKVSRHNINLHKSEIIGINVPIVDLEEVENKYGLKMGIWPNNYLGLPLNGS 120
           NL  ++  FE  S  NINL KS I  INVP    + + + +G+  G  P +YLG+PL G 
Sbjct: 95  NLKMILHLFESASGLNINLSKSTIFPINVPTDPAKSIADSWGISKGHLPTSYLGMPLGGK 154

Query: 121 PRTLSFWAPIIEKIERRLSSWGSSFISKRGM----------------------GDLSLDL 180
           P + +FW  +++KI+++LSSW  S +SK G                        D+S  L
Sbjct: 155 PSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQIWKVNDGEDISFWL 214

Query: 181 ------APIVL------------------------------------SHEEDSWR----- 240
                 AP+ L                                     HE++ W      
Sbjct: 215 DNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKAS 274

Query: 241 --------------WNLHPSGQFST---KSLLSDMSDSKCLLESSLTKGISKDNY-LKIK 289
                         W L+ +  F T   K +LS+   S      +L K + K  +  K K
Sbjct: 275 LPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCK 334

[Close]

BLAST of Spg019664 vs. NCBI nr
Match: RVW89856.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 162.5 bits (410), Expect = 5.4e-36
Identity = 114/382 (29.84%), Postives = 162/382 (42.41%), Query Frame = 0


Query: 1   MSPFLFIMIMDSFSRMLSKAENEGLIKGFRVGHGRLCISHIQFSDNTILFSDLTDESYLQ 60
           +S FLF ++ D  SRML + E   +++GFRVG  R  +SH+QF+D+TI FS+ T E  LQ
Sbjct: 239 LSLFLFTLVADVLSRMLLRVEERNMLEGFRVGRNRTRVSHLQFADDTIFFSN-TREEDLQ 298

Query: 61  NLLNVVRDFEKVSRHNINLHKSEIIGINVPIVDLEEVENKYGLKMGIWPNNYLGLPLNGS 120
            L +++  F  +S   +NL KS I  IN+    +  +      K   WP +YLGLPL G+
Sbjct: 299 TLKSLLLAFGHISGLKVNLDKSNIYDINLDQAHISRLAEMLDCKASGWPIHYLGLPLGGN 358

Query: 121 PRTLSFWAPIIEKIERRLSSWGSSFISKRG------------------------------ 180
           PR   FW P+IE+I RRL  W  +++S RG                              
Sbjct: 359 PRACGFWDPVIERISRRLDGWQKAYLSFRGRITLIQSCLTHMPCYFLSLFKLPASVAAKI 418

Query: 181 ----------------------------------MGDL---------------------- 240
                                             +G L                      
Sbjct: 419 ERLQKDFLWSGIGKGKRDHLVREMTVESDGHIAVLGRLLHKSFRSFPCLLDSEIEDLEGL 478

Query: 241 -----SLDLAPIVLSHEEDSWRWNLHPSGQFSTKSL---LSDMSDSKCLLESSLTKGISK 289
                 LDL+P V     D+  W L  SG F  KS    LS  S S  +  S      + 
Sbjct: 479 MRSLDGLDLSPSV----PDARFWPLSSSGLFKVKSFFLALSRFSGSPQVFPSKFV--WNS 538

[Close]

BLAST of Spg019664 vs. NCBI nr
Match: CAN66330.1 (hypothetical protein VITISV_000598 [Vitis vinifera])

HSP 1 Score: 156.4 bits (394), Expect = 3.9e-34
Identity = 111/401 (27.68%), Postives = 165/401 (41.15%), Query Frame = 0


Query: 1    MSPFLFIMIMDSFSRMLSKAENEGLIKGFRVGHGRLCISHIQFSDNTILFSDLTDESYLQ 60
            +SPFLF ++ D  SRML K E   L++GFRVG  R  +SH+QF+D+TILF+    E  +Q
Sbjct: 2165 LSPFLFTIVADVLSRMLLKVEERNLLEGFRVGRNRCRVSHLQFADDTILFAS-PREDEVQ 2224

Query: 61   NLLNVVRDFEKVSRHNINLHKSEIIGINVPIVDLEEVENKYGLKMGIWPNNYLGLPLNGS 120
             L +++  F ++S   +NL KS + GIN+    L  + +    K   WP  YLGLPL G+
Sbjct: 2225 TLKSLLLVFGQISGLKVNLDKSNLFGINLDQNHLSRLASLLDCKASDWPILYLGLPLGGN 2284

Query: 121  PRTLSFWAPIIEKIERRLSSWGSSFISKRG------------------------------ 180
            P    FW P+IE+I RRL  W  +++S  G                              
Sbjct: 2285 PTACGFWDPVIERISRRLDGWQKAYLSFGGRITLLHSCLSHIPSYFLSLFKIPASVAAKI 2344

Query: 181  -------------------------------------------MGDLSLDLAPIVLSHEE 240
                                                       + D ++ ++ I+ S   
Sbjct: 2345 ERLQRDFLWSGVGEGDGERIRFWEDLWWGDQILKDQYPRLFRVVMDKNIPISSILGSSRP 2404

Query: 241  DSWR------------------------------------WNLHPSGQFSTKSL---LSD 289
             SW                                     W+L  +G F+ KS    LS 
Sbjct: 2405 FSWNFNFRRNLTDSEIEDLERLMHSLDCLNLSTSASDARSWSLCSTGLFTVKSFFTALSQ 2464

[Close]

BLAST of Spg019664 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.4e-04
Identity = 36/143 (25.17%), Postives = 71/143 (49.65%), Query Frame = 0


Query: 1   MSPFLFIMIMDSFSRMLSKAENEGLIKGFRVGHGRLCISHIQFSDNTILFSDLTDESYLQ 60
           +SP LF ++++  +R +     E  IKG ++G   + +S   F+D+ I++ +    S  Q
Sbjct: 663 LSPLLFNIVLEVLARAI---RQEKEIKGIQLGKEEVKLS--LFADDMIVYLENPIVS-AQ 722

Query: 61  NLLNVVRDFEKVSRHNINLHKSEIIGINVPIVDLEEVENKYGLKMGIWPNNYLGLPLNGS 120
           NLL ++ +F KVS + IN+ KS+    N       ++  +    +      YLG+ L   
Sbjct: 723 NLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGELPFTIASKRIKYLGIQLTRD 782

Query: 121 PRTL--SFWAPIIEKIERRLSSW 142
            + L    + P++++I+   + W
Sbjct: 783 VKDLFKENYKPLLKEIKEDTNKW 799

[Close]

BLAST of Spg019664 vs. ExPASy TrEMBL
Match: A5B7M7 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_014186 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.4e-37
Identity = 111/343 (32.36%), Postives = 164/343 (47.81%), Query Frame = 0


Query: 1    MSPFLFIMIMDSFSRMLSKAENEGLIKGFRVGHGRLCISHIQFSDNTILFSDLTDESYLQ 60
            +SPFLF ++ D  SRML +AE   +++ FRVG  R+ +SH+QF+D+TI FS+  +E  LQ
Sbjct: 1306 LSPFLFTLVADVLSRMLKRAEERNMMECFRVGRNRIRVSHLQFADDTIFFSNSREEE-LQ 1365

Query: 61   NLLNVVRDFEKVSRHNINLHKSEIIGINVPIVDLEEVENKYGLKMGIWPNNYLGLPLNGS 120
             L +++  F  +SR  +NL+KS I  IN+    L  +      K+  WP  YLGLPL  +
Sbjct: 1366 TLKSLLLVFGHISRLKVNLNKSSIYDINLDQAHLSRLAVMLDCKVSEWPILYLGLPLGRN 1425

Query: 121  PRTLSFWAPIIEKIER-------------------------------------------R 180
            P+   FW P+IE+I R                                           R
Sbjct: 1426 PKACGFWDPMIERISRNGERIRFWEDLWWGDQPLGTQYPRLFRVVMDKNISISSVLGPSR 1485

Query: 181  LSSWGSSF---ISKRGMGDL-----SLD---LAPIVLSHEEDSWRWNLHPSGQFSTKSLL 240
              SW  +F   +S   + DL     SLD   L+P VL    D+  W+L   G FS KS  
Sbjct: 1486 PFSWNLNFRRNLSDSEIEDLEGLMRSLDDLYLSPSVL----DARLWSLSSLGLFSVKSFF 1545

Query: 241  SDMSDSKCLLESSLTKGISKDNY-LKIKFLLWEISHGAISTKDVLQKRMSYLAISPGWCS 289
              +S S    ++  +K +       K+K  +W ++H  ++T D+LQ R  Y A+SP  C 
Sbjct: 1546 LALSQSSGSPQNFPSKFVWNSQVPFKVKSFVWLVAHKKVNTNDMLQVRRPYKALSPDICI 1605

[Close]

BLAST of Spg019664 vs. ExPASy TrEMBL
Match: A0A438CEZ3 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_53 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 109/374 (29.14%), Postives = 165/374 (44.12%), Query Frame = 0


Query: 1    MSPFLFIMIMDSFSRMLSKAENEGLIKGFRVGHGRLCISHIQFSDNTILFSDLTDESYLQ 60
            +SPFLF ++ D  SRML +AE   +++GFRVG  R  +SH+QF+D+TI FS+ T E  LQ
Sbjct: 812  LSPFLFTLVADVLSRMLVRAEERNMLEGFRVGRNRTRVSHLQFADDTIFFSN-TREEDLQ 871

Query: 61   NLLNVVRDFEKVSRHNINLHKSEIIGINVPIVDLEEVENKYGLKMGIWPNNYLGLPLNGS 120
             L +++  F  +S   +NL KS I GIN+    +  +    G K   WP  YLGLPL G+
Sbjct: 872  TLKSLLLAFGHISGLKVNLDKSNIYGINLDHAHISRLAETLGCKASGWPILYLGLPLGGN 931

Query: 121  PRTLSFWAPIIEKIERRLSSWGSSFISKRGMGDLSLDLAPIVLSHEEDSWRWNL------ 180
            PR   FW P+IE+I RRL  W  +++S  G     + L    L+H    W W        
Sbjct: 932  PRAGGFWDPVIERISRRLDGWQKAYLSFGG----RITLIQSCLTHMPWKWLWRYPREGSA 991

Query: 181  ------------HPSG-----------------------QFSTKSLL------------- 240
                        H +G                       +FS+ +               
Sbjct: 992  LWHQVILSIYGSHSNGWDANTIVRWSHRCPWKAISQVFQEFSSFTRFVVGNGERIRFWED 1051

Query: 241  ---------------------SDMSDSKCLLES----SLTKGISKDNYL-------KIKF 289
                                 S++ D + L+ S     L+  +    ++       K++ 
Sbjct: 1052 LCSCPTRPFSWNLNFRRNLSDSEIEDLEGLMRSLDGVHLSPSVFPSKFVWNSQIPFKVQS 1111

[Close]

BLAST of Spg019664 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.6e-36
Identity = 110/375 (29.33%), Postives = 168/375 (44.80%), Query Frame = 0


Query: 1   MSPFLFIMIMDSFSRMLSKAENEGLIKGFRVGHGRLCISHIQFSDNTILFSDLTDESYLQ 60
           +SPF+F++ MD  SR+L+   ++  I G       L ++HI F+D+ ++F +  D+ Y+ 
Sbjct: 35  LSPFIFVLAMDYLSRLLNNLADKRKINGVNFS-PNLNLTHILFADDILIFVEDRDD-YVS 94

Query: 61  NLLNVVRDFEKVSRHNINLHKSEIIGINVPIVDLEEVENKYGLKMGIWPNNYLGLPLNGS 120
           NL  ++  FE  S  NINL KS I  INVP    + + + +G+  G  P +YLG+PL G 
Sbjct: 95  NLKMILHLFESASGLNINLSKSTIFPINVPTDPAKSIADSWGISKGHLPTSYLGMPLGGK 154

Query: 121 PRTLSFWAPIIEKIERRLSSWGSSFISKRGM----------------------GDLSLDL 180
           P + +FW  +++KI+++LSSW  S +SK G                        D+S  L
Sbjct: 155 PSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQIWKVNDGEDISFWL 214

Query: 181 ------APIVL------------------------------------SHEEDSWR----- 240
                 AP+ L                                     HE++ W      
Sbjct: 215 DNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKAS 274

Query: 241 --------------WNLHPSGQFST---KSLLSDMSDSKCLLESSLTKGISKDNY-LKIK 289
                         W L+ +  F T   K +LS+   S      +L K + K  +  K K
Sbjct: 275 LPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCK 334

[Close]

BLAST of Spg019664 vs. ExPASy TrEMBL
Match: A0A438HZG5 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_45 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.6e-36
Identity = 114/382 (29.84%), Postives = 162/382 (42.41%), Query Frame = 0


Query: 1   MSPFLFIMIMDSFSRMLSKAENEGLIKGFRVGHGRLCISHIQFSDNTILFSDLTDESYLQ 60
           +S FLF ++ D  SRML + E   +++GFRVG  R  +SH+QF+D+TI FS+ T E  LQ
Sbjct: 239 LSLFLFTLVADVLSRMLLRVEERNMLEGFRVGRNRTRVSHLQFADDTIFFSN-TREEDLQ 298

Query: 61  NLLNVVRDFEKVSRHNINLHKSEIIGINVPIVDLEEVENKYGLKMGIWPNNYLGLPLNGS 120
            L +++  F  +S   +NL KS I  IN+    +  +      K   WP +YLGLPL G+
Sbjct: 299 TLKSLLLAFGHISGLKVNLDKSNIYDINLDQAHISRLAEMLDCKASGWPIHYLGLPLGGN 358

Query: 121 PRTLSFWAPIIEKIERRLSSWGSSFISKRG------------------------------ 180
           PR   FW P+IE+I RRL  W  +++S RG                              
Sbjct: 359 PRACGFWDPVIERISRRLDGWQKAYLSFRGRITLIQSCLTHMPCYFLSLFKLPASVAAKI 418

Query: 181 ----------------------------------MGDL---------------------- 240
                                             +G L                      
Sbjct: 419 ERLQKDFLWSGIGKGKRDHLVREMTVESDGHIAVLGRLLHKSFRSFPCLLDSEIEDLEGL 478

Query: 241 -----SLDLAPIVLSHEEDSWRWNLHPSGQFSTKSL---LSDMSDSKCLLESSLTKGISK 289
                 LDL+P V     D+  W L  SG F  KS    LS  S S  +  S      + 
Sbjct: 479 MRSLDGLDLSPSV----PDARFWPLSSSGLFKVKSFFLALSRFSGSPQVFPSKFV--WNS 538

[Close]

BLAST of Spg019664 vs. ExPASy TrEMBL
Match: A0A803QGT5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.5e-35
Identity = 106/386 (27.46%), Postives = 168/386 (43.52%), Query Frame = 0


Query: 2    SPFLFIMIMDSFSRMLSKAENEGLIKGFRVGHGRLCISHIQFSDNTILFSDLTDESYLQN 61
            SPFLF ++ D   RM+ KA N G + GF VG  ++ ISH+QF+D+T+LF++  D   L  
Sbjct: 1039 SPFLFTLVADILGRMVDKAVNSGSLSGFSVGKDKIQISHLQFADDTLLFAN--DRESLLK 1098

Query: 62   LLNVVRDFEKVSRHNINLHKSEIIGINVPIVDLEEVENKYGLKMGIWPNNYLGLPLNGSP 121
            L+ +V  F  +S   +NL K +++G+ +  + + +   + G ++G WP  YLG+PL GSP
Sbjct: 1099 LVRIVEGFCALSGLKVNLSKRQLLGLCMDELVVSQCAAQIGCEVGCWPMKYLGMPLAGSP 1158

Query: 122  RTLSFWAPIIEK-IERRLSSWGSSFISKRG------------------------------ 181
            R   FW  ++EK IE R     + + SKRG                              
Sbjct: 1159 RKKVFWDLVLEKVIESRYGLANNFWDSKRGERMSPRGPWKDIADLYDEYLRLVKFKVGKG 1218

Query: 182  ----------MGDLSL-----DLAPI---------------------------------- 241
                      +GD SL      LA I                                  
Sbjct: 1219 DKIRFWEDEWLGDSSLLHTYPGLALISRAKNVYIIELVAEGGAAGESVVSWDFKFRRNLL 1278

Query: 242  ------------------VLSHEEDSWRWNLHPSGQFSTKSLLSDMSDSKCLLESSLTKG 289
                              +L+   D   W    +G FS+KS  +  + ++ +     TK 
Sbjct: 1279 EKEIPSLIGMLQQMEQVKLLNVNVDIRIWKPDATGVFSSKSAFAWFNSNQNVARPPWTKS 1338

[Close]

BLAST of Spg019664 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.4e-05
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 211 KIKFLLWEISHGAISTKDVLQKRMSYLAISPGWCSLCKMDDETQNHIFIHCSFAWQFW 269
           KIK  LW++  GA++T D L++R  ++   P  C  C  +DET  H+F  C +A Q W
Sbjct: 26  KIKHFLWKLLSGALATGDNLKRR--HIRNHP-QCHRCCQEDETSQHLFFDCFYAQQVW 80

The following BLAST results are available for this feature:

BLAST of Spg019664 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN78744.1	4.9e-37	32.36	hypothetical protein VITISV_014186 [Vitis vinifera]	[more]
RVW21770.1	2.4e-36	29.14	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
KAA0044451.1	5.4e-36	29.33	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
RVW89856.1	5.4e-36	29.84	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
CAN66330.1	3.9e-34	27.68	hypothetical protein VITISV_000598 [Vitis vinifera]	[more]

BLAST of Spg019664 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O00370	4.4e-04	25.17	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]

BLAST of Spg019664 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5B7M7	2.4e-37	32.36	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A438CEZ3	1.2e-36	29.14	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A5A7TSA7	2.6e-36	29.33	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A438HZG5	2.6e-36	29.84	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A803QGT5	6.5e-35	27.46	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Spg019664 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25270.1	2.4e-05	39.66	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 206..268 e-value: 6.7E-12 score: 46.0
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..114 e-value: 1.3E-7 score: 31.3
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 211..285
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 1..145
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 1..145
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 211..285

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg019664.1	Spg019664.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity