Spg019400 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg019400
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNBS-LRR type resistance protein
Locationscaffold1: 45246736 .. 45248716 (-)
RNA-Seq ExpressionSpg019400
SyntenySpg019400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GACAATGGCAAGTTTTGTGGTTATTGTGGTTTCATTGTTGGTTTAAGGTGTTCGAACTTACCAATTTAATAAAGGAAATGGAATAAGGAAGAAAAGAAAAGGAAAGAAAAGAAATCAGGGAAAATGGAACAAAAGTGAAAAAGGAAATTAAAAAAAAAAAGAAAAAGAAGAAAATGGAAACCCACTTTCGGTGCCACTAGTTTAAAAGACTCCACCACCGACAAGATTCCTTTTCAGCCCATCTTCAGTCCATTTTCCCATCTTTTTGCAACCAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAATAAGAAGAAGAAGATTTTCATGGTTTTGAGGTTGAAGAAGATAGCAAAAAGCTCAAGCAAAGGAAGCCATGGCAGGAATCTGAGTTCAACCTGTCTACCTCTTGTTTTTGTTTCGGTTTGAGCTACACAGGAAGAACTAAGAGGTGAGGTTTGGTTTTCTTTAAAGTTAATCCATTTTCTAACAAATTTCATGAAGGAAGCTTGAGCTAAATCTGATTGGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGAGTGTACAAGATGAATCAAAAGCTCTATTTGGTATGGTTGGAAAGAGTATTCAATTTCCTATAACTTTCATGAAGAATTCGTGAGCCAAAAATGACTCGAACTAGGTTTAATTTAAGGAGATAGATAAAGGGTAGCACAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACCAATTGGTTGAGAATATCGTTTTCATTTCTTCATGTACGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTATAGAAAATTACTTTTGGTTAAGTATTGAAGAAGTTATGGGTGTTGGAAGTTAGGGTATTGAATCTGGAAAATCTGGAAAAGTTGAATGTGAAGTGTGATTTTTAATTCAAGTGTCTAGAATTCATGAGCATGGAAGATAAGACTATCTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGATGTTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAATGGTTTCAAGCTTAAGTTACGAGCTTAGATTTTCTAATGAGGTTTATAAATGAGCACGTGATTATTGAGTTTCTGAAAAATAGTTGAAACGACATCCTTTTAAGCCAAGCATGTATTAGCAATAATTATTTAAAGATTTTCGGTTTTTCTTCCACGAGCAAGCTGATTAAGCTTGGGTTTTACGAAAGATAACGACAAGCAGGCATGTTTAAACGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATAGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGGGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGACGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGTGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACCTGCAATGTTTTAAGAAAGCTTTTATCATTGCACGTTTATGTTTAACGCCTTCGTTGAGCAGCTTTATACGTTTAAAGTTTTATCACGTGTTCTGATTTCCGAATGTGCAGTTTTAAATTTAGTCACTCACTGGGCTTCATAGCTCACTCTTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCAAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGA

mRNA sequence

GACAATGGCAAGTTTTGTGGTTATTGTGGTTTCATTGTTGGTTTAAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGAGTGTACAAGATGAATCAAAAGCTCTATTTGAATTCATGAGCATGGAAGATAAGACTATCTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCAAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGA

Coding sequence (CDS)

GACAATGGCAAGTTTTGTGGTTATTGTGGTTTCATTGTTGGTTTAAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGAGTGTACAAGATGAATCAAAAGCTCTATTTGAATTCATGAGCATGGAAGATAAGACTATCTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCAAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGA

Protein sequence

DNGKFCGYCGFIVGLRAQDFRAKQEDLWFSLVFRAFWSVQDESKALFEFMSMEDKTIYGSNARFWLFDRPRGNRSSLQTRELAKTVEIKLPVPDTLPTSAESSRSSSST
Homology
[Close]
BLAST of Spg019400 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0 

Query: 29  FSLVFRAFWSVQDESKALFEFMSMEDKTIYGSNARFWLFDRPRGNRSSLQTRELAKTVEI 88
           +   F   W++ DE  A   F+S    ++  SN      + PRGNR SLQ  +L KTVEI
Sbjct: 56  YPTTFMKIWAILDELVANLVFIS----SVRISNLE--NLEMPRGNRPSLQIGKLEKTVEI 115

Query: 89  KLPVPDTLPTSAESSRSSSST 110
           +LP+PDTLPTS+ESS+S+SST
Sbjct: 116 ELPMPDTLPTSSESSKSNSST 130

[Close]
BLAST of Spg019400 vs. NCBI nr
Match: TYJ96965.1 (uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-06
Identity = 42/72 (58.33%), Postives = 48/72 (66.67%), Query Frame = 0 

Query: 38  SVQDESKALFEFMSMEDKTIYGSNARFWLFDRPRGNRSSLQTRELAKTVEIKLPVPDTLP 97
           S Q ES+ALF    M  K I        ++  PRGNR S QT +L KTVEI+LPVPDTLP
Sbjct: 110 SAQVESEALF---GMVRKLIQYPTTFMNIW--PRGNRPSRQTGKLDKTVEIELPVPDTLP 169

Query: 98  TSAESSRSSSST 110
           TSAESS S+SST
Sbjct: 170 TSAESSGSNSST 176

[Close]
BLAST of Spg019400 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 70  PRGNRSSLQTRELAKTVEIKLPVPDTLPTSAESSRSSSST 110
           PRGNR +L T +L KTVEI+LPVPDTLPTSAESS+S+SST
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSST 118

[Close]
BLAST of Spg019400 vs. NCBI nr
Match: KAA0066795.1 (uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK27942.1 uncharacterized protein E5676_scaffold384G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-05
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 70  PRGNRSSLQTRELAKTVEIKLPVPDTLPTSAESSRSSSST 110
           PRGNR SLQTREL KT+E  LPVPDTLPTSAESS S+SST
Sbjct: 64  PRGNRPSLQTRELDKTIE--LPVPDTLPTSAESSGSNSST 101

[Close]
BLAST of Spg019400 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 5.3e-05
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 59  GSNARFW--LFD--------RPRGNRSSLQTRELAKTVEIKLPVPDTLPTSAESSRSSSS 110
           G+   FW  LF         RPRGNR SLQT +L KTVEI+LP+PDTLPT AES  S+SS
Sbjct: 10  GATVNFWFVLFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSS 69

[Close]
BLAST of Spg019400 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-06
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0 

Query: 29  FSLVFRAFWSVQDESKALFEFMSMEDKTIYGSNARFWLFDRPRGNRSSLQTRELAKTVEI 88
           +   F   W++ DE  A   F+S    ++  SN      + PRGNR SLQ  +L KTVEI
Sbjct: 56  YPTTFMKIWAILDELVANLVFIS----SVRISNLE--NLEMPRGNRPSLQIGKLEKTVEI 115

Query: 89  KLPVPDTLPTSAESSRSSSST 110
           +LP+PDTLPTS+ESS+S+SST
Sbjct: 116 ELPMPDTLPTSSESSKSNSST 130

[Close]
BLAST of Spg019400 vs. ExPASy TrEMBL
Match: A0A5D3BET3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00070 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 42/72 (58.33%), Postives = 48/72 (66.67%), Query Frame = 0 

Query: 38  SVQDESKALFEFMSMEDKTIYGSNARFWLFDRPRGNRSSLQTRELAKTVEIKLPVPDTLP 97
           S Q ES+ALF    M  K I        ++  PRGNR S QT +L KTVEI+LPVPDTLP
Sbjct: 110 SAQVESEALF---GMVRKLIQYPTTFMNIW--PRGNRPSRQTGKLDKTVEIELPVPDTLP 169

Query: 98  TSAESSRSSSST 110
           TSAESS S+SST
Sbjct: 170 TSAESSGSNSST 176

[Close]
BLAST of Spg019400 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.7e-06
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 70  PRGNRSSLQTRELAKTVEIKLPVPDTLPTSAESSRSSSST 110
           PRGNR +L T +L KTVEI+LPVPDTLPTSAESS+S+SST
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSST 118

[Close]
BLAST of Spg019400 vs. ExPASy TrEMBL
Match: A0A5D3DWP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001370 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.0e-05
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 70  PRGNRSSLQTRELAKTVEIKLPVPDTLPTSAESSRSSSST 110
           PRGNR SLQTREL KT+E  LPVPDTLPTSAESS S+SST
Sbjct: 64  PRGNRPSLQTRELDKTIE--LPVPDTLPTSAESSGSNSST 101

[Close]
BLAST of Spg019400 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.6e-05
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 59  GSNARFW--LFD--------RPRGNRSSLQTRELAKTVEIKLPVPDTLPTSAESSRSSSS 110
           G+   FW  LF         RPRGNR SLQT +L KTVEI+LP+PDTLPT AES  S+SS
Sbjct: 10  GATVNFWFVLFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSS 69

The following BLAST results are available for this feature:
BLAST of Spg019400 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062263.12.1e-0648.15hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa][more]
TYJ96965.18.2e-0658.33uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa][more]
KAA0052218.11.4e-0577.50uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0066795.14.1e-0582.50uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK... [more]
KAA0040420.15.3e-0559.02NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
BLAST of Spg019400 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg019400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V2F21.0e-0648.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BET34.0e-0658.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UAH66.7e-0677.50CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3DWP32.0e-0582.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TAS62.6e-0559.02NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
BLAST of Spg019400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg019400.1Spg019400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding