Spg019340 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg019340
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold1: 43296153 .. 43305283 (-)
RNA-Seq ExpressionSpg019340
SyntenySpg019340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGTTGTCCGATTGCCGATGTTCTTAATCAGAGTGGGAGCTCAATGTCATTCTCGTTGGGTTTTCGTCGTTCTTTGACCAATAGGGAAACGACGGAGGTCACTAATCTCTTATTTTTGATTGGGGATTGTCAGTTTAGGGTGGGAATGAGGGATGTTTGTTCTTGGAGTCTTAGCCCATCTGAGGGCTTCTCTTGTCGGTCCCTTTTCGATGGTTCCTTAATCCCTCCCCCTAGTGAGTCGATTTTTTCTATTCTGTGGGGAGTAAAAATCCCGAGAAAGATTAGGTTCTTTATTTGGCAGGTTATCCACGGAAGAGTTAATACTCTTGATAAGCTCTCGAGGAAGATGACTTCGTTGGTGGGTCCGTTTTGTTGTATTTTATGTCGGAAGGTGGAGGAAGATCTGGACCATATTTTATGGAGTTGCGAGTTTGCTTGTTTGATATGGGGTTTGTTTCACAACGCTTTTGGGCTCCAGGCGAGACCTTTTAGAGACTACAGGGAGATGATCCAGGAGTTCCTCCTCCATCCGCCTTTTCGCGAGAAGGGGAGGTTTCTATGGTTAGCTGGGGTGTGTGCTGTGTTATGGGGTCTTTGGGGAGAGAGGAATAATAGGGTGTTTCGAGGTCTTGAGAGGAGTCCTTCTGATGTTTGGGATCTCACTAGATTCTATGTTTCTCTCTGGGCCTCTGTGTCTAAGGCTTTTTGTAATTACTCTTTAGGTTGTATTATCTTGGATTGGCGACCTTTCCTTTAAAAGGGGGACCTTTTTGTGGGCTGGTTTTTTTGTATGCCCTTGTATTCTTTCATTTTTTTCTCAATGAAAGCTGGTATTTTTATCAAAAAATTGATCATGGAGTTCCAGTTTAGGGAGGGGAGGAGGGATGCCCGTAGTTGGAGTCTTAGTCCCCTTTAAGGGCTTCTCGTGTAGTTCCTTCTTTTAGTGGTTGCTAAATCCCTCTCCCTATAAGGAGTCTATCTTTTCTATTCTTTGGAGGGTGAGAATTCCTAAGAAGGTTAGATTCTTTACCTAGCAAGTTATTCATGGAAGAGTTAATACTTTCGACAATCTAATGAGAAAGAAGTCTTTGCTGGTGGGGCTGTTCTGCTGTATTCTTTGTCAGAGGGCGGAGGAAGATCTGGATCACATTTTGAGGAGTTGCACCTTCGCTCGTGCAGTTTGGAGCTCGTTTTTTGAGGCTTTTAGTTTGCAGGGCAGGAGCTTCAGGGATCTTAGAGAGATGATTGAGGAGTTCCTCCTCCATCCGCTTTGCCTTTCAGAGAGAAGAGGAGGGAGCTATGGCTTGCTGGGGTGTGTTCTGTATTTTGGGGTTTATGGGGAGAGAGGAATAATAGGGTTTTTAGAGGAGTGGAGAGGCCCCCGTCGGATGTTTGGGCCCTCATTAGATTTCATGTTTCTCTCCCGGCTTTGGTTTCGAAGGCTTTTTGTAACTATTTGATAGGTCTTATTAACCTTGATTGGAGCCCCTTTCTTTAGCAGGGTTCCCTTTTGTGGGCTTTTTTTTTTTTGGATGCCTTTGTATTCTTTCATTTTTTCTCGATGAAAGCTTGGCTTTTTCTCAAAAGGAAAACAAAAAAAAATTAAAGTTGCAACTCAGATTTTCATGGTTCTGCATATCATTTATTTTGATATTCTGATTCTCAACAGTTCTGAAATGGTCTCGGGAACACGTTTTGAAATTTAAGATCGTCAATCCAGTTATTCACCAAAAATCTTATATTGTTCTTGAACCCCAGCTTAAATTTATTATATATTTTGAACCAAACTCTCTACTTAGCTACAAATTTCCCAAAGCATTTTGAGTTTACTAGTTTGTTTGTTAGGAGGGGTTAGTCTTAGACTGGAAAGGAGAGATGTTCGCTTTTGGAGTCCAAATCCTTATGGGGGCTTTTCTTGTAGGTCGTTCTTTCGATGCTCGTTAAATCCCTCTTTGGTTGACGAGTCTATATTTTTTGTGCTTGTGGAAGGTGAAAGTTCCAAAGCAAGTCCAATTCTTCATTTGCCAGGTCATACTTAGAACGGTTAAACACTTTTGACCGATTGTTGAGAAAGATGTCTTCTTTGGTTGGTTCTTTTTGCTGTATTCTTTGTTGGAAGGCTGAGGAAGATCTTAATCATTTGCTTTGGGGTTGCGATTTTGCTTGATTAGTTTGGAGACTTCTTCTTTGAGGTTTTTGGCTTCAGTTTTGCTAGACATCAAGGTTGCAAGGAGATGATCGAGGAGTTCCTTCTTTATCCACCTTTCCGGGGGAAAGGAAGGTTTTTGTTGGCTCATTGGGATTTGTGCTGTTTTTTGGGGTATGTGGGGGAAGAGGAATGATAGAATCTTCCGAGGGATTGAGAGATTGCCTTGTGATGTTTGGTCCAATGTTAGGTTCTATGTTTCGCTTTGGGCTTTGGTGTCTAAGGCTTCTTTTTGTAATTACCCATTAGGTCTCATCTCATTTTGCTTGATTGGAATCTCTTTTTGTAGTTGGGTTTCCTTTTTGGGGCTTGGTTTCGTTTTTGGTGCCCTTGTATTCTTTTATTTTTCTCAATAAAAGCTCTCTTCTTTATATAAAAAAGAAAAGGAACATGATTGTCCCTTTCCATCCTGGAAGATACATTATGTTCAAAGAAATTTAAACTTTGTTGCGTCATACTTGTATTTGCCAACTATGATTTTTTGCCTCCTGGATTAATGATCTTTGGAAACTCTCTAAAGCCATTTTGGGAAGAGAGAGAGCCAATTGGAAGAATATTTCCCTTTCTAGACATGATAGACTGACACTTCTAAATGTCCTAAATGTTCTCATCATTCTCTTTAGAGAAACTTTCGTTTTTGTCAAACTCGGGTCGCCCTTCAATGTTATGATCTCATGCCCATTCTCTATCCGAATGGTTAATGTTGTCCAATCCACTCTAGTTTCTCCCAACGTATGGAGCCATTGCATTCCCAGCACAACATCAACTCCTACCAAGTCAAGAGGTAAAAAACTTTCCACCACTACAAATATGAAATAGAATTAGGGACATACAAATATGTAAAAGAATTAGGACAATGATGACCAAATATTTGACGATTAATATTTACACAACATTCATAAATAGTAGAAATTCCAACAATAAGCCTGTTGCCAGTAAGGGAGACAAAAGCATCCTCTGAAGTGCCTTTCCAAGGGTAGTTAACTCCAGAGGCTTAACTATTTCTCAATGTTTTTCAGAGTCCTCAAAGGGATTCAAAGTTGTGGACCTTCAAAGGGAGCAGAATGTTACGGTCATTCTCTTGTTCCTAAACTTATCAAGAAAAGTGGATAGCTCAGTTTGGCTCAAGTAAATATTGAAATATAAAATCCCTAAGAAGGTGGTTTCTTGCTCATGAGAAGCTGAATACACGCTACAGACTTCAAAAAAGAATGCCTAGGCTTTCAATTTCCCCTAGATGGTCGATTTATGCAAGATGTATGTCCTTGTGCTGCACCCTCTCTTCTTATGCCCTTTTGCTGCCTCCTGCTGGTGTGAGTTTTGTTTTGTTTTTTTTTTAAGGAAACAAAGACAATTGATATGATGAAATGGATTACAACAGGGTCCTATCGAAAATTATTTACAAAAAATACCTCCATTCATTAACGAGGGTAGTAGGATTGTAATTATAAAAAGGGGGAGGCAATTTGCTCCAAGATACAGTTAAAAGAGAAGTAGAATCAGTAAAGTAGCCAATGTCTTTGTTCTTATGCATGAAGATGCGACCATTACGTTCCAACCAAAGATCCCAAAAGAAAGCACAAACATGATATAGCCAAAGGATCATTTTTTCATTTTGGAAGGATGGCCTATATATAAGAGAGATAGAAGGGAAAGAATAGTTTGGGGGGTTTAGAATTGGGAAACCTTAAGGTTGTGGGCAAGCCGATTAGTTTGGGGGGTTTAGAATTGGGAAACCTAAAGGTTCGCAACAAAGCCTTGTTAGCTAAATGGCTCTGGCGGTTTCCCCTAGAGTCTTCTTCCCTTTGGCATAGGATTATTGTGAGCAAATACGGTCCTCATCCTAATGAGTGGTTGACGGGAGGGGGTAAAGGCACTTTTAGAAATCCATGGAAAGACATAGCCCTCGAGATTCCTACCTTCTCTAGCCTTGTTCATTGTATGGTGGGGGATGGGAGAGATACGAAGACAGATGGTTGGGGGATAGACCCCTCTGTCTATCCTTCTCTCGGTTGTTCTATTTATCCTCCATGAAAAACCGTTCAGTGGTTGATGTTTTGTTTCACTCGGGGAGCTCTCCTTCGTTTGCTTTTGGCTTTAGTCGTTCGTTGTCCAATAGGGAAACGACGGATATTGTGTCCCTTATGTCTTTGATTGAGGAGTTCGATTTCAGGGCGGGGAGGAGGGATTTCCGTTGTTGGAGCCCTAGTCCTTCTGACGAGTTCTCTTGTAGCTCCCTTTTCCGTTGGCTCTTGCAACCTTCTCCCCAAAGTGAGTCCATTTTTTCGCGTGTGTGGAAGGTGAAAGTCCCGAAGAAGATTAGGTTTTTATGTGGCAAGTTATCCATGGCAGGGTTAATACCTACGATCGTCTTATGAAAAGGATGCCCTCTTTGGTTGGTCCGTTTTGTTGCATTCTGTGTCGGAAGGCGGAGGAAGATCTGGATCACATTCTGTGGAGTTGTGCTTATGCACGTGCAGCGTGGGATCGGTTTGCTCAGGTTTTTGGGTTGCAGGGGATGTCTTTTGTTGACCACAGGGAGATGATCAAGGAGTTCCTCCTCCATTCGCCTTTGCGTGAGAGCGAGATTTTTGTGGCTTGGGGGGATGTGTGCGTTGTTGTGGAACCTTTGGGGTGAAAGGAATAATAGAGTGTTTAGGGGGAGAGAGAGGGACCCCGAGGATATGTGGTCCCTCACTCGTTATCATGTCTCTCTTTGGGCTTCGGTCTCAAAGTTGTTTTGTAATTATCCGTTAGGTTGTATCTTGCTTGATTGGGGTCCCTTTCTCTAGCTGGGCTCCTTTTTGTGGGCTTGTTTTTTGTATGCCCGTGTATTCTTTCATTTTTTCTCAATGAAAGTTGGTTTTTCATAAAAAAAAAAAAAAAAAAAATCACCCAGTCTGAGAAAGGCCCAGTCAAAAGCCGATTACAGGAGGTTCCAAAACTTAGAGGCATAGGGACAGCTGTTGAATAGATGAATCAGGGACTCGACATCACTGTAGCACATCGGCAGCATGATGGAGGTATGTACAGTCAAGGGGATCTCCTTTGGAGTTTATCATGTGTTGATACAAGAATGACTAACCTCCCAGAGGAATCATCCAAATGTGCTTGTATAATTCAGAATAAACACTAGGCATCGAGGAAGATAAAAGCTTTGATAGAGATTTAGAGGTGAGGGTCTTACTACTCTCAAGATCCCTGAAATCCCAAATGTGCTGGTGTGAGCCTTTTTAAATCCCTCTCTATATATATATTTTAATAAGAAGCCAACTTTCATTGAGAAAAAAAGGAAAGAATACAAAGGCATACAGAAAAAACAAGTCCACAAAAAAGGTCCCTTTAAAGGGAGGGACTCCAATCAACTAAAATAATACCCCCAACTCATAGTTACAAAATAATTTCATGCATGTCTTTTCTTTTTAAAATTCTCGATATTAGTTTGTGCTTTGGCTTCCCAAATAGCAGTTTGGCTGCTTTTTTGAGCTATTCTCTGGTACTTTCTTTTAAGGCCAAGCGAGGGCCTAATGCTTAAATGCAGTAATGGCCCTTCTTTGGAGACTATTGTTCGAGAGAAGCATAAGGACCTTTCAATGGGAGGTTGGAATTACTTTGTCTTTGCCTTGAATTACGGTTCTCTTTCAAAAAGATTTATTTTAGTTGCAGTTTCGCACATGTTTTTTCTTTTTGGTAATCCCCTTGACTTGGTGGGGATATCTTGTCTCACCTTCTTTTGTATCTTCCTTTCACAATGAAAGTTCAGTTCCTGTAAGGAAAAGAGAAAACGGAGGCCTTGTTAGCTATTTTGTGTTAGTCAATGGTGGAGGAGATCTTGTTTTATCCTCTATTTACGGATAAGGGAGGTGGCTATGGACGGATTGCCTTTTTAGCTATTTTGTGGTACATTTGGTTTGAGAAAAACATGAGGATTTTTGGAGGTGGAGATGTCTTGGGGAAGGTTTGGTCTTCAATTAGGTTTAATACCCCTGCTGCTTGATTTTTGATAAAAACTGGCAAGGATAGTTTCGGAAAGAGTCAACCTACTGCTGCTTGATTATTGTTATGGAACAATGCTCTTACTGGATAGCTAATATAGAAAGGAAGTGTACTTTAGAAAATTAAAACGGTGGTGTAGGGTGGGGCTTTATGGAAAGCTGGTTTTTTGTTGTTATATGGGACATTTGGATCGAGAGTACTAACAATATCTTCAGTGTTCTGTTCGAGGAGATTTGGTCCTTGGTCAGATTTGCTTTGGGTGTCTGCATCTTAAGGATTTTTGTAATTATTCGTTACGTCTCATTCTCTTTGGACTTGAGCCTTTTTCTTGTTTGTTAAGTTAGTCCCTTGGCTCCTTTTAGGCTGTTGTTTTTGTAGGCCCATTATTTGTATGTTCTGACCTTTGTCAGTCCTCTTGTATTCTTCAATTTCCATTTTCTTTTGGGGAATTGCAATGGGTAGCAAAAAATATTAGGATATTTGCAAATTTAGCTATGATTTTTTAGATTTGCAAACATAGCAAAAATTTAAAAATCTGATTTCCGTTTTTTTTATTATTCCAATTTTACCCTTGTTGGTATATCGATAGGTATATTAGTAGTATATCTGATATATTTTATATTTACTGATATACGAAATATAAAGTATACCAAATTTGATATACTCGAATGAATACAATGATATATCTAATATATACTTGACTTGATAAGCATAACATTTGATATACCAATGATATACTTGACTTTTTTTTTTTTTTTTAGAATACTTGATATGTTACTTTCTTTACTTATATTTGTTATATTTATTTTTCTCTTTATTGAATTATGTGGTGTTACTTTCATATTTTAAATGAAATGTTTGTCTTTTATAAAATAAATGTGTCTTCTATACCTGTTATGAATGTTGATACACCATTGATATACCTCATTTGTATTTTTTTTATACTACTCAAATAATTAATAACATTGATATACATGATTATGAGTAGCTAAATACATCAATGATAGATTTGTTATTAAAAAAATCATTGATATATACGCATTCAACCAAAAGGTTAGAGGTTTAAATCCTCTACCACACATATTGTCCCAAAATAAAGCTAATATATCTAATTCTTCATTGATAAAGTATATCAAAGACATCTAAAACTAATGAAAGCTCATGTGTATACTTCATTTATGAAGTATATTATATTCACGAAAATATACATCTGATATACTATATATTTAGTATATCAGTTGATCGATATACCAAATATCAGTATATTTTACCCTTGTTGGTATATCGATAGGTATATTAGTAGTATATCTGATATATTTTATATTTACTGATATACGAAATATAAAGTATACCAAATTTGATATACTCGAATGAATACAATGATATACCTAATATATACTTGATTTGATAAGCATAACATTTGATATACCAATGATATACTTGATATGTTACTTTCTTTACTTATATTTGTTATATTTTTTTTTCTCTTTATTGAATTATGTGGTGATACTCACATATTTTAAATAAAATGTTTGTCTTTTATAAAATAAATGTGTCTTCTATACCTGTTATGAATGTTGATACACCATTGATATACCTCATTTGTATTTTTTTTTAACTTACCTCATTTTTTATACTACTCAAATAATTAATAACATTGATATACTTGATTATGAGTAGCTAAATACATCAACGATAGATTTGTTATTAAACAAAATCATTGATATATACACATTCAACAAAGAGGTTAGAGGTTTAAATCCTCTACCACACATATTGTCCCAAAATAAAGCTAATATATCTAATTCTTCATTGATAAAGTATATCAAAGATATCTAAAACTAATGAAAGCTCATGTATGAAGTATATTATATTCACGAAAATATACATCTGATATACTATATATTTAGTATATCAGTTGATTGATATCCCAAATATCTAGTATATTTTTAGGGTTTAATATACTAGATATTTGGTATATCAGTGGATGGCGAGCTGAGGTTATTTTAGTCTTTTTGCGTTATTGTTTGGGCCGGGCCAAACTTTTTTGGCTATATCTGCAAACCCAATAAATCAAAGACACGCCTGCAATTATGATTTCTTTTTTTGCTATTGATGCAAATGCCCCTTTTCTTTTTCAATGAAAGTTTTTTTTTTTTTTTTTTTTGTTAAAAAAAAATTTAAAGAAATGGTGGTGTACATAGGGTACCAATATTGTGATGAATTTTAATGTTTTAATCCTCTTTTTAGTTGAAACATTTTACCTCATAAGAATTCATGATCATTGGAAATCTTATCTCACTTCCAGGCTCCTCCTGTGATTGTATTTTCTTCAGCTTGTGCAGGAATGACAGGTTAGTTACTTTATTGTTATTTATTGCTGCTATTTTTTTTCCCTTTGCAAACATGGATTATGGTAATCCAAATTGTCTGTTTTACTTCTTTAGAATGAGTAGTAGTGATATGAAATGCCATTTTGTTTAGCATTGGAAATAGGAACACATTAAGGAAAATGACTTTGATAGAGGTTGTTGGTGATATTCTCCATGTGAAGGTGATATTTGGTACAAAAGTTGATACTAAATGAATGCTTACAGGTGGTGCTGTTCCAGCTTTGGCACAACTTGTTGCTTCATCTTATCATTCGGCTGTGTCTCCTTTGTTAACATCATCGTCAAAAAATGACAAGTCTCAGGATTCAAGATCATCTTCTGCCTTGTAATGCTAATATACATAGAGGGGATTCTTATAGGTTTATAATCTAATATAGCTTATATTTTTGCTCAAGGATAAGACAAAAGTTTACTTGTTTATTTATGTATTTTTTTTCTGTTGATATTTGTGAGTGTATAGATCTTATGAGTGCCTCTACTAATTTCATGGACAATTGTCTGCCTTTACTACATTTAGTTGACAATAACTCG

mRNA sequence

ATGAAAAGTTGTCCGATTGCCGATGTTCTTAATCAGAGTGGGAGCTCAATGTCATTCTCGTTGGGTTTTCGTCGTTCTTTGACCAATAGGGAAACGACGGAGGTCACTAATCTCTTATTTTTGATTGGGGATTGTCAGTTTAGGGTGGGAATGAGGGATGTTTGTTCTTGGAGTCTTAGCCCATCTGAGGGCTTCTCTTGTCGGTCCCTTTTCGATGGTTCCTTAATCCCTCCCCCTAGTGAGTCGATTTTTTCTATTCTGTGGGGAGTAAAAATCCCGAGAAAGATTAGGTTCTTTATTTGGCAGGTTATCCACGGAAGAGTTAATACTCTTGATAAGCTCTCGAGGAAGATGACTTCGTTGGTGGGTCCGTTTTGTTGTATTTTATGTCGGAAGGTGGAGGAAGATCTGGACCATATTTTATGGAGTTGCGAGTTTGCTTGTTTGATATGGGGTTTGTTTCACAACGCTTTTGGGCTCCAGGCGAGACCTTTTAGAGACTACAGGGAGATGATCCAGGAGTTCCTCCTCCATCCGCCTTTTCGCGAGAAGGGGAGGTTTCTATGGTTAGCTGGGGTGTGTGCTGTGTTATGGGGTCTTTGGGGAGAGAGGAATAATAGGGTGTTTCGAGGTCTTGAGAGGAGTCCTTCTGATGTTTGGGATCTCACTAGATTCTATGTTTCTCTCTGGGCCTCTGTGTCTAAGGCTTTTTTTATTCATGGAAGAGTTAATACTTTCGACAATCTAATGAGAAAGAAGTCTTTGCTGGTGGGGCTGTTCTGCTGTATTCTTTGTCAGAGGGCGGAGGAAGATCTGGATCACATTTTGAGGAGTTGCACCTTCGCTCGTGCAGTTTGGAGCTCGTTTTTTGAGGCTTTTAGTTTGCAGGGCAGGAGCTTCAGGGATCTTAGAGAGATGATTGAGGAGTTCCTCCTCCATCCGCTTTGCCTTTCAGAGAGAAGAGGAGGGAGCTATGGCTTGCTGGGTTTTGCTAGACATCAAGGTTGCAAGGAGATGATCGAGGAGTTCCTTCTTTATCCACCTTTCCGGGGGAAAGGAAGGTTTTTGTTGGCTCATTGGGATTTGTGCTGTTTTTTGGGAGAAACTTTCGTTTTTGTCAAACTCGGGTCGCCCTTCAATGTTATGATCTCATGCCCATTCTCTATCCGAATGGTTAATGTTGTCCAATCCACTCTAGTTTCTCCCAACGTATGGAGCCATTGCATTCCCAGCACAACATCAACTCCTACCAAGTCAAGAGAGTCCTCAAAGGGATTCAAAGTTGTGGACCTTCAAAGGGAGCAGAATGTTACGGTCATTCTCTTGTTCCTAAACTTATCAAGAAAAGTGGATAGCTCAGTTTGGCTCAACTCTCCTTCGTTTGCTTTTGGCTTTAGTCGTTCGTTGTCCAATAGGGAAACGACGGATATTGTGTCCCTTATGTCTTTGATTGAGGAGTTCGATTTCAGGGCGGGGAGGAGGGATTTCCGTTGTTGGAGCCCTAGTCCTTCTGACGAGTTCTCTTGTAGCTCCCTTTTCCGTTGGCTCTTGCAACCTTCTCCCCAAAGTGAGTCCATTTTTTCGCGTGTGTGGAAGGCGGAGGAAGATCTGGATCACATTCTGTGGAGTTGTGCTTATGCACGTGCAGCGTGGGATCGGTTTGCTCAGGTTTTTGGGTTGCAGGGGATGTCTTTTGTTGACCACAGGGAGATGATCAAGGAGTTCCTCCTCCATTCGCCTTTGCGTGAGAGCGAGATTTTTGTGGCTTGGGGGGATGTGTGCGTTGTTGTGGAACCTTTGGGTTTGTGCTTTGGCTTCCCAAATAGCAGTTTGGCTGCTTTTTTGAGCTATTCTCTGGCTCCTCCTGTGATTGTATTTTCTTCAGCTTGTGCAGGAATGACAGGTGGTGCTGTTCCAGCTTTGGCACAACTTGTTGCTTCATCTTATCATTCGGCTGTGTCTCCTTTGTTAACATCATCGTCAAAAAATGACAAGTCTCAGGATTCAAGATCATCTTCTGCCTTGTAA

Coding sequence (CDS)

ATGAAAAGTTGTCCGATTGCCGATGTTCTTAATCAGAGTGGGAGCTCAATGTCATTCTCGTTGGGTTTTCGTCGTTCTTTGACCAATAGGGAAACGACGGAGGTCACTAATCTCTTATTTTTGATTGGGGATTGTCAGTTTAGGGTGGGAATGAGGGATGTTTGTTCTTGGAGTCTTAGCCCATCTGAGGGCTTCTCTTGTCGGTCCCTTTTCGATGGTTCCTTAATCCCTCCCCCTAGTGAGTCGATTTTTTCTATTCTGTGGGGAGTAAAAATCCCGAGAAAGATTAGGTTCTTTATTTGGCAGGTTATCCACGGAAGAGTTAATACTCTTGATAAGCTCTCGAGGAAGATGACTTCGTTGGTGGGTCCGTTTTGTTGTATTTTATGTCGGAAGGTGGAGGAAGATCTGGACCATATTTTATGGAGTTGCGAGTTTGCTTGTTTGATATGGGGTTTGTTTCACAACGCTTTTGGGCTCCAGGCGAGACCTTTTAGAGACTACAGGGAGATGATCCAGGAGTTCCTCCTCCATCCGCCTTTTCGCGAGAAGGGGAGGTTTCTATGGTTAGCTGGGGTGTGTGCTGTGTTATGGGGTCTTTGGGGAGAGAGGAATAATAGGGTGTTTCGAGGTCTTGAGAGGAGTCCTTCTGATGTTTGGGATCTCACTAGATTCTATGTTTCTCTCTGGGCCTCTGTGTCTAAGGCTTTTTTTATTCATGGAAGAGTTAATACTTTCGACAATCTAATGAGAAAGAAGTCTTTGCTGGTGGGGCTGTTCTGCTGTATTCTTTGTCAGAGGGCGGAGGAAGATCTGGATCACATTTTGAGGAGTTGCACCTTCGCTCGTGCAGTTTGGAGCTCGTTTTTTGAGGCTTTTAGTTTGCAGGGCAGGAGCTTCAGGGATCTTAGAGAGATGATTGAGGAGTTCCTCCTCCATCCGCTTTGCCTTTCAGAGAGAAGAGGAGGGAGCTATGGCTTGCTGGGTTTTGCTAGACATCAAGGTTGCAAGGAGATGATCGAGGAGTTCCTTCTTTATCCACCTTTCCGGGGGAAAGGAAGGTTTTTGTTGGCTCATTGGGATTTGTGCTGTTTTTTGGGAGAAACTTTCGTTTTTGTCAAACTCGGGTCGCCCTTCAATGTTATGATCTCATGCCCATTCTCTATCCGAATGGTTAATGTTGTCCAATCCACTCTAGTTTCTCCCAACGTATGGAGCCATTGCATTCCCAGCACAACATCAACTCCTACCAAGTCAAGAGAGTCCTCAAAGGGATTCAAAGTTGTGGACCTTCAAAGGGAGCAGAATGTTACGGTCATTCTCTTGTTCCTAAACTTATCAAGAAAAGTGGATAGCTCAGTTTGGCTCAACTCTCCTTCGTTTGCTTTTGGCTTTAGTCGTTCGTTGTCCAATAGGGAAACGACGGATATTGTGTCCCTTATGTCTTTGATTGAGGAGTTCGATTTCAGGGCGGGGAGGAGGGATTTCCGTTGTTGGAGCCCTAGTCCTTCTGACGAGTTCTCTTGTAGCTCCCTTTTCCGTTGGCTCTTGCAACCTTCTCCCCAAAGTGAGTCCATTTTTTCGCGTGTGTGGAAGGCGGAGGAAGATCTGGATCACATTCTGTGGAGTTGTGCTTATGCACGTGCAGCGTGGGATCGGTTTGCTCAGGTTTTTGGGTTGCAGGGGATGTCTTTTGTTGACCACAGGGAGATGATCAAGGAGTTCCTCCTCCATTCGCCTTTGCGTGAGAGCGAGATTTTTGTGGCTTGGGGGGATGTGTGCGTTGTTGTGGAACCTTTGGGTTTGTGCTTTGGCTTCCCAAATAGCAGTTTGGCTGCTTTTTTGAGCTATTCTCTGGCTCCTCCTGTGATTGTATTTTCTTCAGCTTGTGCAGGAATGACAGGTGGTGCTGTTCCAGCTTTGGCACAACTTGTTGCTTCATCTTATCATTCGGCTGTGTCTCCTTTGTTAACATCATCGTCAAAAAATGACAAGTCTCAGGATTCAAGATCATCTTCTGCCTTGTAA

Protein sequence

MKSCPIADVLNQSGSSMSFSLGFRRSLTNRETTEVTNLLFLIGDCQFRVGMRDVCSWSLSPSEGFSCRSLFDGSLIPPPSESIFSILWGVKIPRKIRFFIWQVIHGRVNTLDKLSRKMTSLVGPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFLLHPPFREKGRFLWLAGVCAVLWGLWGERNNRVFRGLERSPSDVWDLTRFYVSLWASVSKAFFIHGRVNTFDNLMRKKSLLVGLFCCILCQRAEEDLDHILRSCTFARAVWSSFFEAFSLQGRSFRDLREMIEEFLLHPLCLSERRGGSYGLLGFARHQGCKEMIEEFLLYPPFRGKGRFLLAHWDLCCFLGETFVFVKLGSPFNVMISCPFSIRMVNVVQSTLVSPNVWSHCIPSTTSTPTKSRESSKGFKVVDLQREQNVTVILLFLNLSRKVDSSVWLNSPSFAFGFSRSLSNRETTDIVSLMSLIEEFDFRAGRRDFRCWSPSPSDEFSCSSLFRWLLQPSPQSESIFSRVWKAEEDLDHILWSCAYARAAWDRFAQVFGLQGMSFVDHREMIKEFLLHSPLRESEIFVAWGDVCVVVEPLGLCFGFPNSSLAAFLSYSLAPPVIVFSSACAGMTGGAVPALAQLVASSYHSAVSPLLTSSSKNDKSQDSRSSSAL
Homology
[Close]
BLAST of Spg019340 vs. NCBI nr
Match: RVX02903.1 (Actin-related protein 7 [Vitis vinifera])

HSP 1 Score: 146.7 bits (369), Expect = 7.0e-31
Identity = 81/240 (33.75%), Postives = 123/240 (51.25%), Query Frame = 0 

Query: 1   MKSCPIADVLNQSGSSMSFSLGFRRSLTNRETTEVTNLLFLIGDCQFRVGMRDVCSWSLS 60
           +K+  +++VL+ S   ++++L FRR+LT+ E   +  L+  +   +F   + D  +WSLS
Sbjct: 457 VKNLTVSNVLDNS-FPLAWNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLS 516

Query: 61  PSEGFSCRSLF--DGSLIPPPSESIFSILWGVKIPRKIRFFIWQVIHGRVNTLDKLS-RK 120
            S+ FS +S F     +  P        LW  K+P K++   W V HG+VNT DKL  R+
Sbjct: 517 SSDLFSVKSFFLASSKVSNPILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRR 576

Query: 121 MTSLVGPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFLL 180
               + P  CILC+   E +DH+   C     +W       GL   P R + +M+     
Sbjct: 577 PYKSLCPQWCILCKGNGESIDHLFLHCPVTIGLWNKLFKLVGLDWVPPRSFEDMLVIAFK 636

Query: 181 HPPFREKGRFLWLAGVCAVLWGLWGERNNRVFRGLERSPSDVWDLTRFYVSLWASVSKAF 238
                 +G+ LW      ++W +W ERNNR+F+   RS   +WDL  FY SLWAS S AF
Sbjct: 637 GLGNSLRGKTLWQVACLTLVWIVWQERNNRIFKDKGRSEETLWDLILFYSSLWASCSAAF 695

[Close]
BLAST of Spg019340 vs. NCBI nr
Match: TYK09969.1 (calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 9.2e-31
Identity = 83/203 (40.89%), Postives = 108/203 (53.20%), Query Frame = 0 

Query: 1   MKSCPIADVLNQSGSSMSFSLGFRRSLTNRETTEVTNLLFLIGDCQFRVGMRDVCSWSLS 60
           +K+  +AD L  +G+S SFS GFRR+L++RET+ V  L+ L+    FR+G RDV  WS  
Sbjct: 153 LKNHFMADFLVWNGNSCSFSFGFRRALSDRETSNVVALISLLESHSFRLGRRDVTVWSPF 212

Query: 61  PSEGFSCRSLFDGSL-IPPPSESIFSILWGVKIPRKIRFFIWQVIHGRVNTLDKLSRKMT 120
           P EGF C+S F   +   P SES+ S++W +K+PRK   F WQ                 
Sbjct: 213 PLEGFLCKSFFQCLVNSTPTSESVSSLIWRIKVPRKFVLFSWQ----------------- 272

Query: 121 SLVGPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFLLHP 180
                        VEEDLDH+LW CE    +W  F   FGL     RD R  ++EFLL+ 
Sbjct: 273 -------------VEEDLDHLLWHCELVSCVWDDFLQTFGLSYARHRDVRGTVEEFLLNS 325

Query: 181 PFREKGRFLWLAGVCAVLWGLWG 203
           P  E+G FLW A V A L G  G
Sbjct: 333 PCGERGPFLWHACVHAHLVGFVG 325

[Close]
BLAST of Spg019340 vs. NCBI nr
Match: RVX17758.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 144.1 bits (362), Expect = 4.5e-30
Identity = 83/240 (34.58%), Postives = 119/240 (49.58%), Query Frame = 0 

Query: 1   MKSCPIADVLNQSGSSMSFSLGFRRSLTNRETTEVTNLLFLIGDCQFRVGMRDVCSWSLS 60
           MK+  +++VL  S   +S++  FRR+LT+ E   +  L+  +          D   WSLS
Sbjct: 221 MKNLTVSNVLGNS-LPLSWNFNFRRNLTDSEIDLLQRLMSSLNSVLLSPSSSDSRVWSLS 280

Query: 61  PSEGFSCRSLFDG-SLIPPPSESI-FSILWGVKIPRKIRFFIWQVIHGRVNTLDKLS-RK 120
            S  FS +S F   S +  P   +    LW  K+P K++   W V HG+VNT DKL  R+
Sbjct: 281 SSSSFSVKSFFYALSKVSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRR 340

Query: 121 MTSLVGPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFLL 180
               + P  CILC+   E +DH+   C     +W    N  G+   P R   +M+     
Sbjct: 341 PYKALYPQWCILCKGHGESIDHLFLHCPITIGLWHRLFNLVGVIWVPPRSLEDMLVISFK 400

Query: 181 HPPFREKGRFLWLAGVCAVLWGLWGERNNRVFRGLERSPSDVWDLTRFYVSLWASVSKAF 238
                 +G+ LW      ++W +W ERNNR+F    R+   VWDL RFY SLWAS +KAF
Sbjct: 401 GLGNSLRGKTLWQIACLTLIWMVWHERNNRIFEDKGRTEEMVWDLIRFYSSLWASCTKAF 459

[Close]
BLAST of Spg019340 vs. NCBI nr
Match: RVX19652.1 (hypothetical protein CK203_005129 [Vitis vinifera])

HSP 1 Score: 144.1 bits (362), Expect = 4.5e-30
Identity = 83/240 (34.58%), Postives = 121/240 (50.42%), Query Frame = 0 

Query: 1   MKSCPIADVLNQSGSSMSFSLGFRRSLTNRETTEVTNLLFLIGDCQFRVGMRDVCSWSLS 60
           +K+  +++VL  S   +S++  FRR+LT+ E   +  L+  +    F     D  +WSLS
Sbjct: 101 VKNLTVSNVLGNS-LPLSWNFNFRRNLTDSEIDLLQRLMSSLNSVLFSPSSSDSRAWSLS 160

Query: 61  PSEGFSCRSLFDG-SLIPPPSESI-FSILWGVKIPRKIRFFIWQVIHGRVNTLDKLS-RK 120
            S  FS +S F   S +  P   +    LW  K+P K++   W V HG+VNT DKL  R+
Sbjct: 161 SSGLFSVKSFFCALSKVSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRR 220

Query: 121 MTSLVGPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFLL 180
               + P  CILC+   E +DH+   C     +W    N  GL   P R   +M+     
Sbjct: 221 PYKALSPQWCILCKGNGESIDHLFLHCPVTIGLWHRLFNLVGLIWVPPRSLEDMLVISFK 280

Query: 181 HPPFREKGRFLWLAGVCAVLWGLWGERNNRVFRGLERSPSDVWDLTRFYVSLWASVSKAF 238
                 +G+ LW      ++W +W ERNNR+F    R+   VWDL RFY SLWAS ++AF
Sbjct: 281 GLGNSLRGKTLWQIACLTLIWMVWQERNNRIFEDKGRTEEMVWDLIRFYSSLWASCTEAF 339

[Close]
BLAST of Spg019340 vs. NCBI nr
Match: RVW72196.1 (Flowering time control protein FY [Vitis vinifera])

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-29
Identity = 85/262 (32.44%), Postives = 131/262 (50.00%), Query Frame = 0 

Query: 1   MKSCPIADVLNQSGSSMSFSLGFRRSLTNRETTEVTNLLFLIGDCQFRVGMRDVCSWSLS 60
           +++  +++VL  S   +S++  FRR+LT+ E   +  L+  +          D  +WSLS
Sbjct: 694 VRNLTVSNVLGNS-FPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLS 753

Query: 61  PSEGFSCRSLFDGSLIPPPSESIF---SILWGVKIPRKIRFFIWQVIHGRVNTLDKLS-R 120
            S  FS +S F  +L    +  +F     LW  K+P K++   W V HG+VNT DKL  R
Sbjct: 754 SSGSFSVKSFF-YALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLR 813

Query: 121 KMTSLVGPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFL 180
           +    + P  CILC++  E +DH+   C     +W    N  G+   P R   +M+    
Sbjct: 814 RPYKALCPQWCILCKRNGESIDHLFLHCPVTIGLWHRLFNLVGVIWVPPRSIEDMLVISF 873

Query: 181 LHPPFREKGRFLWLAGVCAVLWGLWGERNNRVFRGLERSPSDVWDLTRFYVSLWASVSKA 240
                  +G+ LW      ++W +W ERNNR+F    R+   VWDL RFY SLWAS ++A
Sbjct: 874 RGLGNSVRGKILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEA 933

Query: 241 FF---IHGRVNTFDNLMRKKSL 256
           F    ++  V  F  L+ +K L
Sbjct: 934 FRGVPLNSIVGCFPWLLCRKDL 953

[Close]
BLAST of Spg019340 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-06
Identity = 32/106 (30.19%), Postives = 50/106 (47.17%), Query Frame = 0 

Query: 50  GMRDVCSWSLSPSEGFSCRSLFDGSLIP----PPSESIFSILWGVKIPRKIRFFIWQVIH 109
           G RD  SW  S    FS RS ++   +     P   S F+ LW V++P +++ F+W V +
Sbjct: 250 GARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGN 309

Query: 110 GRVNTLDKLSRKMTSLVGPFCCILCRKVEEDLDHILWSCEFACLIW 152
             V T ++  R+  S      C +C+   E + H+L  C     IW
Sbjct: 310 QAVMTEEERHRRHLSASN--VCQVCKGGVESMLHVLRDCPAQLGIW 353

[Close]
BLAST of Spg019340 vs. ExPASy TrEMBL
Match: A0A438J1R4 (Actin-related protein 7 OS=Vitis vinifera OX=29760 GN=ARP7_3 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.4e-31
Identity = 81/240 (33.75%), Postives = 123/240 (51.25%), Query Frame = 0 

Query: 1   MKSCPIADVLNQSGSSMSFSLGFRRSLTNRETTEVTNLLFLIGDCQFRVGMRDVCSWSLS 60
           +K+  +++VL+ S   ++++L FRR+LT+ E   +  L+  +   +F   + D  +WSLS
Sbjct: 457 VKNLTVSNVLDNS-FPLAWNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLS 516

Query: 61  PSEGFSCRSLF--DGSLIPPPSESIFSILWGVKIPRKIRFFIWQVIHGRVNTLDKLS-RK 120
            S+ FS +S F     +  P        LW  K+P K++   W V HG+VNT DKL  R+
Sbjct: 517 SSDLFSVKSFFLASSKVSNPILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRR 576

Query: 121 MTSLVGPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFLL 180
               + P  CILC+   E +DH+   C     +W       GL   P R + +M+     
Sbjct: 577 PYKSLCPQWCILCKGNGESIDHLFLHCPVTIGLWNKLFKLVGLDWVPPRSFEDMLVIAFK 636

Query: 181 HPPFREKGRFLWLAGVCAVLWGLWGERNNRVFRGLERSPSDVWDLTRFYVSLWASVSKAF 238
                 +G+ LW      ++W +W ERNNR+F+   RS   +WDL  FY SLWAS S AF
Sbjct: 637 GLGNSLRGKTLWQVACLTLVWIVWQERNNRIFKDKGRSEETLWDLILFYSSLWASCSAAF 695

[Close]
BLAST of Spg019340 vs. ExPASy TrEMBL
Match: A0A5D3CI74 (Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00980 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.4e-31
Identity = 83/203 (40.89%), Postives = 108/203 (53.20%), Query Frame = 0 

Query: 1   MKSCPIADVLNQSGSSMSFSLGFRRSLTNRETTEVTNLLFLIGDCQFRVGMRDVCSWSLS 60
           +K+  +AD L  +G+S SFS GFRR+L++RET+ V  L+ L+    FR+G RDV  WS  
Sbjct: 153 LKNHFMADFLVWNGNSCSFSFGFRRALSDRETSNVVALISLLESHSFRLGRRDVTVWSPF 212

Query: 61  PSEGFSCRSLFDGSL-IPPPSESIFSILWGVKIPRKIRFFIWQVIHGRVNTLDKLSRKMT 120
           P EGF C+S F   +   P SES+ S++W +K+PRK   F WQ                 
Sbjct: 213 PLEGFLCKSFFQCLVNSTPTSESVSSLIWRIKVPRKFVLFSWQ----------------- 272

Query: 121 SLVGPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFLLHP 180
                        VEEDLDH+LW CE    +W  F   FGL     RD R  ++EFLL+ 
Sbjct: 273 -------------VEEDLDHLLWHCELVSCVWDDFLQTFGLSYARHRDVRGTVEEFLLNS 325

Query: 181 PFREKGRFLWLAGVCAVLWGLWG 203
           P  E+G FLW A V A L G  G
Sbjct: 333 PCGERGPFLWHACVHAHLVGFVG 325

[Close]
BLAST of Spg019340 vs. ExPASy TrEMBL
Match: A0A438K969 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_73 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.2e-30
Identity = 83/240 (34.58%), Postives = 119/240 (49.58%), Query Frame = 0 

Query: 1   MKSCPIADVLNQSGSSMSFSLGFRRSLTNRETTEVTNLLFLIGDCQFRVGMRDVCSWSLS 60
           MK+  +++VL  S   +S++  FRR+LT+ E   +  L+  +          D   WSLS
Sbjct: 221 MKNLTVSNVLGNS-LPLSWNFNFRRNLTDSEIDLLQRLMSSLNSVLLSPSSSDSRVWSLS 280

Query: 61  PSEGFSCRSLFDG-SLIPPPSESI-FSILWGVKIPRKIRFFIWQVIHGRVNTLDKLS-RK 120
            S  FS +S F   S +  P   +    LW  K+P K++   W V HG+VNT DKL  R+
Sbjct: 281 SSSSFSVKSFFYALSKVSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRR 340

Query: 121 MTSLVGPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFLL 180
               + P  CILC+   E +DH+   C     +W    N  G+   P R   +M+     
Sbjct: 341 PYKALYPQWCILCKGHGESIDHLFLHCPITIGLWHRLFNLVGVIWVPPRSLEDMLVISFK 400

Query: 181 HPPFREKGRFLWLAGVCAVLWGLWGERNNRVFRGLERSPSDVWDLTRFYVSLWASVSKAF 238
                 +G+ LW      ++W +W ERNNR+F    R+   VWDL RFY SLWAS +KAF
Sbjct: 401 GLGNSLRGKTLWQIACLTLIWMVWHERNNRIFEDKGRTEEMVWDLIRFYSSLWASCTKAF 459

[Close]
BLAST of Spg019340 vs. ExPASy TrEMBL
Match: A0A438KEN2 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_005129 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.2e-30
Identity = 83/240 (34.58%), Postives = 121/240 (50.42%), Query Frame = 0 

Query: 1   MKSCPIADVLNQSGSSMSFSLGFRRSLTNRETTEVTNLLFLIGDCQFRVGMRDVCSWSLS 60
           +K+  +++VL  S   +S++  FRR+LT+ E   +  L+  +    F     D  +WSLS
Sbjct: 101 VKNLTVSNVLGNS-LPLSWNFNFRRNLTDSEIDLLQRLMSSLNSVLFSPSSSDSRAWSLS 160

Query: 61  PSEGFSCRSLFDG-SLIPPPSESI-FSILWGVKIPRKIRFFIWQVIHGRVNTLDKLS-RK 120
            S  FS +S F   S +  P   +    LW  K+P K++   W V HG+VNT DKL  R+
Sbjct: 161 SSGLFSVKSFFCALSKVSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRR 220

Query: 121 MTSLVGPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFLL 180
               + P  CILC+   E +DH+   C     +W    N  GL   P R   +M+     
Sbjct: 221 PYKALSPQWCILCKGNGESIDHLFLHCPVTIGLWHRLFNLVGLIWVPPRSLEDMLVISFK 280

Query: 181 HPPFREKGRFLWLAGVCAVLWGLWGERNNRVFRGLERSPSDVWDLTRFYVSLWASVSKAF 238
                 +G+ LW      ++W +W ERNNR+F    R+   VWDL RFY SLWAS ++AF
Sbjct: 281 GLGNSLRGKTLWQIACLTLIWMVWQERNNRIFEDKGRTEEMVWDLIRFYSSLWASCTEAF 339

[Close]
BLAST of Spg019340 vs. ExPASy TrEMBL
Match: A0A438GJ06 (Flowering time control protein FY OS=Vitis vinifera OX=29760 GN=FY_4 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.9e-30
Identity = 85/262 (32.44%), Postives = 131/262 (50.00%), Query Frame = 0 

Query: 1   MKSCPIADVLNQSGSSMSFSLGFRRSLTNRETTEVTNLLFLIGDCQFRVGMRDVCSWSLS 60
           +++  +++VL  S   +S++  FRR+LT+ E   +  L+  +          D  +WSLS
Sbjct: 694 VRNLTVSNVLGNS-FPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLS 753

Query: 61  PSEGFSCRSLFDGSLIPPPSESIF---SILWGVKIPRKIRFFIWQVIHGRVNTLDKLS-R 120
            S  FS +S F  +L    +  +F     LW  K+P K++   W V HG+VNT DKL  R
Sbjct: 754 SSGSFSVKSFF-YALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLR 813

Query: 121 KMTSLVGPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFL 180
           +    + P  CILC++  E +DH+   C     +W    N  G+   P R   +M+    
Sbjct: 814 RPYKALCPQWCILCKRNGESIDHLFLHCPVTIGLWHRLFNLVGVIWVPPRSIEDMLVISF 873

Query: 181 LHPPFREKGRFLWLAGVCAVLWGLWGERNNRVFRGLERSPSDVWDLTRFYVSLWASVSKA 240
                  +G+ LW      ++W +W ERNNR+F    R+   VWDL RFY SLWAS ++A
Sbjct: 874 RGLGNSVRGKILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEA 933

Query: 241 FF---IHGRVNTFDNLMRKKSL 256
           F    ++  V  F  L+ +K L
Sbjct: 934 FRGVPLNSIVGCFPWLLCRKDL 953

[Close]
BLAST of Spg019340 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-10
Identity = 40/144 (27.78%), Postives = 66/144 (45.83%), Query Frame = 0 

Query: 76  IPPPSESI--FSILWGVKIPRKIRFFIWQVIHGRVNTLDKLSRKMTSLVGPFCCILCRKV 135
           I PP  SI   + +W + I  K++ F+W+ +   + T ++L+ +    + P  C  C + 
Sbjct: 149 INPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTR-GMRIDP-SCPRCHRE 208

Query: 136 EEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFLLHPPFREKGRFLWLAGV 195
            E ++H L++C FA + W L  ++         D+ E I   L          F  L  V
Sbjct: 209 NESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPV 268

Query: 196 CAVLWGLWGERNNRVFRGLERSPS 218
             ++W +W  RNN VF     SPS
Sbjct: 269 W-LIWRIWKARNNVVFNKFRESPS 289

[Close]
BLAST of Spg019340 vs. TAIR 10
Match: AT1G60720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-07
Identity = 38/154 (24.68%), Postives = 62/154 (40.26%), Query Frame = 0 

Query: 63  EGFSCRSLFDGSLIPPPSESIFSILWGVKIPRKIRFFIWQVIHGRVNTLDKLSRKMTSLV 122
           +GFS    +D      P       +W      K  F +W     R+ T  +L+      +
Sbjct: 107 QGFSSARTWDAIRPRAPELDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLA--SWGHI 166

Query: 123 GPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPFRDYREMIQEFLLHPPFR 182
             F C LC    E  DH+L+SCEFA  +W L  +    + R F  + E++    +     
Sbjct: 167 QSFDCCLCTIETESRDHLLFSCEFAAQVWRLAFSRLCPRQRLFCSWAELLS--WMRSSSS 226

Query: 183 EKGRFLWLAGVCAVLWGLWGERNNRVFRGLERSP 217
                L      A+++ +W +RNN +   L  +P
Sbjct: 227 SAPSLLRKVSAHAIIYNIWRQRNNVLHNNLRIAP 256

[Close]
BLAST of Spg019340 vs. TAIR 10
Match: AT3G04040.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18250.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 3.7e-06
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 620 APPVIVFSSACAGMTGGAVPALAQLVASSYHSAVSPLLTSSSKNDKSQDSRSSS 674
           APPVIV SSACAG+ GGAVPALAQL +SSYH+AV        + DK+Q   SS+
Sbjct: 82  APPVIVVSSACAGLAGGAVPALAQLASSSYHAAVHSSQPPQGQ-DKNQLHNSST 134

[Close]
BLAST of Spg019340 vs. TAIR 10
Match: AT5G18250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 8.3e-06
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 620 APPVIVFSSACAGMTGGAVPALAQLVASSYHSAV-SPLLTSSSKNDKSQDSRSS 673
           APPVIV SSACAG+ GG VPALAQL +SSY +AV S     + K++K Q S +S
Sbjct: 78  APPVIVLSSACAGLAGGTVPALAQLASSSYRAAVHSSQPPQAQKDNKMQKSTTS 131

[Close]
BLAST of Spg019340 vs. TAIR 10
Match: AT1G33710.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-05
Identity = 45/165 (27.27%), Postives = 66/165 (40.00%), Query Frame = 0 

Query: 50  GMRDVCSWSLSPS--EGFSCRSLFDGSLIPPPSE--SIFSILWGVKIPRKIRFFIWQVIH 109
           G  DV  W +      GFS    +  + + P S+  S    +W      K  F +W    
Sbjct: 13  GELDVYDWVVEDKLCNGFSSAKTW--AALRPRSDVVSWAKTVWFKGATPKHAFHMWVTNL 72

Query: 110 GRVNTLDKLSRKMTSLVGPFCCILCRKVEEDLDHILWSCEFACLIWGLFHNAFGLQARPF 169
            R+ T  +L+     L     C LC    ED DH+  +CEFAC +W        L A  F
Sbjct: 73  DRLPTKTRLASWGMQL--QTTCGLCSLDIEDRDHLFLTCEFACFLWHTVSVRLELPAFSF 132

Query: 170 RDYREM----IQEFLLHPPFREKGRFLWLAGVCAVLWGLWGERNN 207
             + ++    +Q     PP   K        V +VL+ +W +RNN
Sbjct: 133 VVWNDLMDWTLQRNRRSPPTLRK------LIVQSVLYAIWKQRNN 167

The following BLAST results are available for this feature:
BLAST of Spg019340 vs. NCBI nr
Match NameE-valueIdentityDescription
RVX02903.17.0e-3133.75Actin-related protein 7 [Vitis vinifera][more]
TYK09969.19.2e-3140.89calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa][more]
RVX17758.14.5e-3034.58putative ribonuclease H protein [Vitis vinifera][more]
RVX19652.14.5e-3034.58hypothetical protein CK203_005129 [Vitis vinifera][more]
RVW72196.11.0e-2932.44Flowering time control protein FY [Vitis vinifera][more]
BLAST of Spg019340 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0C2F62.1e-0630.19Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
BLAST of Spg019340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438J1R43.4e-3133.75Actin-related protein 7 OS=Vitis vinifera OX=29760 GN=ARP7_3 PE=4 SV=1[more]
A0A5D3CI744.4e-3140.89Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A438K9692.2e-3034.58Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_73 PE... [more]
A0A438KEN22.2e-3034.58zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_005129 PE=4... [more]
A0A438GJ064.9e-3032.44Flowering time control protein FY OS=Vitis vinifera OX=29760 GN=FY_4 PE=4 SV=1[more]
BLAST of Spg019340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G09510.14.3e-1027.78Ribonuclease H-like superfamily protein [more]
AT1G60720.11.2e-0724.68RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT3G04040.13.7e-0661.11unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G18250.18.3e-0659.26unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G33710.11.9e-0527.27RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 238..286
e-value: 1.2E-6
score: 29.2
coord: 65..151
e-value: 3.8E-15
score: 56.3
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 65..167
coord: 240..302
NoneNo IPR availablePANTHERPTHR33116:SF38OS01G0158850 PROTEINcoord: 65..167
coord: 240..302

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg019340.1Spg019340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
cellular_component GO:0110165 cellular anatomical entity