Spg019106 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg019106
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold1: 42075356 .. 42078172 (+)
RNA-Seq Expression	Spg019106
Synteny	Spg019106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGCATGTACTGATGGCAAGTTTCTTGTGAGGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGAAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTACTGTGCAAGATGATCAGCCACAGTGTTCTGCTTCAGTTGCTTCACTATCCATCCAACAGCTTCAAGATATGATCACAAACTGTATCGGAGCTCAGTACAGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCGAAATTTCAACAGTTTGATGGAAAGGGCAATCCTAAACAGCATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACACGAGGGGACCTACTAGTCAAACAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCAATAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGACGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAGCCTCGCACCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAAAAAACCAAGACCTTATACTCCCTAACATGAGGAAAGAAGGAAGGAATGACGAAGAGACTATAGAAGAATCTATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCAAAGGAAAAGCGACAAACAAATGGAACGCATCACTTAACTTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCCCCGATTCCGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCTAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTATGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCAGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAGGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCAACCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAGAGCTTTTAAAATGTAAAAAACTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGAGCAAAAAAATTTGAACTACGTTATGACTTGATCCTTTTTCGTCAAAGGGTACGTAGGCAGCTTAAAGAAAGCTTTAGGTTCAGTCTCTGCAAATAAAAAAATGTAACAAATATTGAAGCGCGATAAGACAAATTGAAGAAACTCATCACTACTGGGGGCAACATAGCAAATGGAAGTTGTGCACCGTTATGAATGTGAAGCTACGAGTTGGATGAATAAAAGAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTTAAGTCCGGTGTTCCACTCACCCTAAGTTCGCAGTTCCTTCCTCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTTCTCCCAAATTTGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGCTCTCATGCGCTCCGCTGTAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAAGGTTCTCACGCGCTCCGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTTAA

mRNA sequence

ATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGCATGTACTGATGGCAAGTTTCTTGTGAGGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGAAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCAGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAGGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCAACCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCCTCCAAGTTCGAAGGCTCTCATGCGCTCCGCTGTAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAAGGTTCTCACGCGCTCCGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTTAA

Coding sequence (CDS)

ATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGCATGTACTGATGGCAAGTTTCTTGTGAGGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGAAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCAGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAGGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCAACCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCCTCCAAGTTCGAAGGCTCTCATGCGCTCCGCTGTAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAAGGTTCTCACGCGCTCCGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTTAA

Protein sequence

MNNFYTGSTTYCCFNEMRLQEDKAPIIASGEITLQGACTDGKFLVRYNPLFEPDSDIVTVMMTETRTTKERMAEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQTQEKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTEGSLKFLPPSSKALMRSAVVPSSKFEGSHALRCSSFLQVRKVLTRSAAAVHSSKFEGSHALRCSSFSPSSKVLMRFAAVPSPQVRRFSRASLQFLP

Homology

[Close]

BLAST of Spg019106 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 1.7e-33
Identity = 87/129 (67.44%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 126 EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVS 185
           EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC  ST AR SAF+RLS+S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 186 TSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLIN 245
           TS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S  PSRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 239

Query: 246 TEGSLKFLP 255
           TEGSL   P
Sbjct: 240 TEGSLTVKP 248

[Close]

BLAST of Spg019106 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-32
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 126 EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVS 185
           EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEENQC  ST AR SAF+RLS+S
Sbjct: 61  EEVDNSNEIKQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 120

Query: 186 TSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLIN 245
           TS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S  PSRMKRK SV IN
Sbjct: 121 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDIN 180

Query: 246 TEGSLKFLP 255
           TEGSL   P
Sbjct: 181 TEGSLTVKP 189

[Close]

BLAST of Spg019106 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 1.9e-32
Identity = 89/142 (62.68%), Postives = 106/142 (74.65%), Query Frame = 0


Query: 113 EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVST 172
           E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST
Sbjct: 528 EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTST 587

Query: 173 SARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSN 232
            AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ +  
Sbjct: 588 YARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRV 647

Query: 233 PSRMKRKFSVLINTEGSLKFLP 255
           PSRMKRK SV INTEGSL   P
Sbjct: 648 PSRMKRKLSVDINTEGSLTVKP 665

[Close]

BLAST of Spg019106 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 1.9e-32
Identity = 89/142 (62.68%), Postives = 106/142 (74.65%), Query Frame = 0


Query: 113 EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVST 172
           E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST
Sbjct: 528 EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTST 587

Query: 173 SARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSN 232
            AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ +  
Sbjct: 588 YARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRV 647

Query: 233 PSRMKRKFSVLINTEGSLKFLP 255
           PSRMKRK SV INTEGSL   P
Sbjct: 648 PSRMKRKLSVDINTEGSLTVKP 665

[Close]

BLAST of Spg019106 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 3.2e-32
Identity = 89/142 (62.68%), Postives = 105/142 (73.94%), Query Frame = 0


Query: 113 EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVST 172
           E +N   SY    EEVDNS + +QRTSVFDRIKP TTR  VFQR+SMA  EEENQC +ST
Sbjct: 52  EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMST 111

Query: 173 SARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSN 232
            AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M + + K F E N D K+ S  
Sbjct: 112 YARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRV 171

Query: 233 PSRMKRKFSVLINTEGSLKFLP 255
           PSRMKRK SV INTEGSL   P
Sbjct: 172 PSRMKRKLSVDINTEGSLTVKP 189

[Close]

BLAST of Spg019106 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.2e-34
Identity = 87/129 (67.44%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 126 EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVS 185
           EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC  ST AR SAF+RLS+S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 186 TSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLIN 245
           TS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S  PSRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 239

Query: 246 TEGSLKFLP 255
           TEGSL   P
Sbjct: 240 TEGSLTVKP 248

[Close]

BLAST of Spg019106 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.3e-33
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 126 EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVS 185
           EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEENQC  ST AR SAF+RLS+S
Sbjct: 61  EEVDNSNEIKQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 120

Query: 186 TSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLIN 245
           TS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S  PSRMKRK SV IN
Sbjct: 121 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDIN 180

Query: 246 TEGSLKFLP 255
           TEGSL   P
Sbjct: 181 TEGSLTVKP 189

[Close]

BLAST of Spg019106 vs. ExPASy TrEMBL
Match: A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 9.1e-33
Identity = 89/142 (62.68%), Postives = 106/142 (74.65%), Query Frame = 0


Query: 113 EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVST 172
           E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST
Sbjct: 528 EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTST 587

Query: 173 SARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSN 232
            AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ +  
Sbjct: 588 YARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRV 647

Query: 233 PSRMKRKFSVLINTEGSLKFLP 255
           PSRMKRK SV INTEGSL   P
Sbjct: 648 PSRMKRKLSVDINTEGSLTVKP 665

[Close]

BLAST of Spg019106 vs. ExPASy TrEMBL
Match: A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 9.1e-33
Identity = 89/142 (62.68%), Postives = 106/142 (74.65%), Query Frame = 0


Query: 113 EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVST 172
           E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST
Sbjct: 528 EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTST 587

Query: 173 SARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSN 232
            AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ +  
Sbjct: 588 YARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRV 647

Query: 233 PSRMKRKFSVLINTEGSLKFLP 255
           PSRMKRK SV INTEGSL   P
Sbjct: 648 PSRMKRKLSVDINTEGSLTVKP 665

[Close]

BLAST of Spg019106 vs. ExPASy TrEMBL
Match: A0A5A7SMQ5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00040 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-32
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 126 EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVS 185
           EEVDNS + +QRTSVFDRIKP TTR S FQR+SMA  EEENQC  ST AR SAF+RLS+S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSAFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 186 TSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLIN 245
           TS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K++S   SRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIRSRVSSRMKRKLSVGIN 239

Query: 246 TEGSLKFLP 255
           TEGSL   P
Sbjct: 240 TEGSLTVKP 248

The following BLAST results are available for this feature:

BLAST of Spg019106 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044978.1	1.7e-33	67.44	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0050734.1	1.1e-32	65.89	gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol...	[more]
TYK08944.1	1.9e-32	62.68	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0055462.1	1.9e-32	62.68	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0036008.1	3.2e-32	62.68	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg019106 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg019106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ06	8.2e-34	67.44	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3BBF9	5.3e-33	65.89	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7UI09	9.1e-33	62.68	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CCI8	9.1e-33	62.68	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7SMQ5	1.6e-32	65.89	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Spg019106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg019106.1	Spg019106.1	mRNA