Spg019102 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg019102
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold1: 42817556 .. 42817927 (+)
RNA-Seq ExpressionSpg019102
SyntenySpg019102
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTACGACGTGCTCCCTTCCTTTTCCTCTACTTCTTCCTCCTTACCATATCATCTCCTTCCAGACGCTTGGTGACTTCTAGAGTTGTCCTTGCTTCGGTACCCAATCTAAAAACATTAGAAGCCACAACACTTACTAATGGTGCACCATTAAATAAACCACCTTATGAAAATCCAATCGACAAGGCTCCAAATTCTAACGATTTTGTCACTTTTGATCTCCCTAATACAAAGGAGGCAAGTGCACCAATGTCTAATTTGGGCTTTGTAGATTGCAAACCCAAAGGACCAATTAGATGGTCTGCTCCGAGTCCAATCCATAACAGCATATGCAACCGTCGTAAGACAGACCATAAAGTAAAATCCTGA

mRNA sequence

ATGGATTTACGACGTGCTCCCTTCCTTTTCCTCTACTTCTTCCTCCTTACCATATCATCTCCTTCCAGACGCTTGGTGACTTCTAGAGTTGTCCTTGCTTCGGTACCCAATCTAAAAACATTAGAAGCCACAACACTTACTAATGGTGCACCATTAAATAAACCACCTTATGAAAATCCAATCGACAAGGCTCCAAATTCTAACGATTTTGTCACTTTTGATCTCCCTAATACAAAGGAGGCAAGTGCACCAATGTCTAATTTGGGCTTTGTAGATTGCAAACCCAAAGGACCAATTAGATGGTCTGCTCCGAGTCCAATCCATAACAGCATATGCAACCGTCGTAAGACAGACCATAAAGTAAAATCCTGA

Coding sequence (CDS)

ATGGATTTACGACGTGCTCCCTTCCTTTTCCTCTACTTCTTCCTCCTTACCATATCATCTCCTTCCAGACGCTTGGTGACTTCTAGAGTTGTCCTTGCTTCGGTACCCAATCTAAAAACATTAGAAGCCACAACACTTACTAATGGTGCACCATTAAATAAACCACCTTATGAAAATCCAATCGACAAGGCTCCAAATTCTAACGATTTTGTCACTTTTGATCTCCCTAATACAAAGGAGGCAAGTGCACCAATGTCTAATTTGGGCTTTGTAGATTGCAAACCCAAAGGACCAATTAGATGGTCTGCTCCGAGTCCAATCCATAACAGCATATGCAACCGTCGTAAGACAGACCATAAAGTAAAATCCTGA

Protein sequence

MDLRRAPFLFLYFFLLTISSPSRRLVTSRVVLASVPNLKTLEATTLTNGAPLNKPPYENPIDKAPNSNDFVTFDLPNTKEASAPMSNLGFVDCKPKGPIRWSAPSPIHNSICNRRKTDHKVKS
Homology
BLAST of Spg019102 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-11
Identity = 51/112 (45.54%), Postives = 62/112 (55.36%), Query Frame = 0

Query: 1   MDLRRAPFLFLYFFLL-TISSPSRRLVTSRVVLASVPNLKTLEATTLTNGAPLNKPPYEN 60
           M  R   FL + FFLL  ISSPS  + TSR +LA    L T E+            P + 
Sbjct: 1   MGPRGGAFLTIIFFLLIVISSPSTIIATSRHMLA----LDTKES------------PPQP 60

Query: 61  PIDKAPNSNDFVTFDLPNTKEASAPMSNLGFVDCKPKGPIRWSAPSPIHNSI 112
           P+DK P SNDF T  LPN  +A  PM       CKPKGP+RWS+PSPI N++
Sbjct: 61  PMDKPPTSNDFDTLSLPNGTKAMPPMPESAVRSCKPKGPVRWSSPSPIRNNL 96

BLAST of Spg019102 vs. NCBI nr
Match: KAE8649707.1 (hypothetical protein Csa_012825 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 6.8e-09
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 0

Query: 10  FLYFFLLTISSPSRRLVTSRVVLASVPNLKTLEATTLTN--GAPLNKPPYENPIDKAPNS 69
           F +FFL+ +SSPS+ + T+R +L       TLE +T+ N   +    P   + I   P S
Sbjct: 10  FTFFFLIAMSSPSKIIATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESSSSISLPPTS 69

Query: 70  NDFVTFDLPNTKEASAPMSNLGFVDCKPKGPIRWSAPSPIHN 110
           ++F++FD PN   A AP+     +DCKPKGPI WSAP+P HN
Sbjct: 70  DEFISFD-PNGMGARAPLP-ASLLDCKPKGPIAWSAPNPKHN 109

BLAST of Spg019102 vs. NCBI nr
Match: KAE8649709.1 (hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothetical protein Csa_012458, partial [Cucumis sativus] >KGN55007.2 hypothetical protein Csa_012551, partial [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 6.8e-09
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 0

Query: 10  FLYFFLLTISSPSRRLVTSRVVLASVPNLKTLEATTLTN--GAPLNKPPYENPIDKAPNS 69
           F +FFL+ +SSPS+ + T+R +L       TLE +T+ N   +    P   + I   P S
Sbjct: 10  FTFFFLIAMSSPSKIMATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESSSSISLPPTS 69

Query: 70  NDFVTFDLPNTKEASAPMSNLGFVDCKPKGPIRWSAPSPIHN 110
           ++F++FD PN   A AP+     +DCKPKGPI WSAP+P HN
Sbjct: 70  DEFISFD-PNGMGARAPLP-ASLLDCKPKGPIAWSAPNPKHN 109

BLAST of Spg019102 vs. NCBI nr
Match: TYK09256.1 (hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-06
Identity = 42/123 (34.15%), Postives = 60/123 (48.78%), Query Frame = 0

Query: 1   MDLRRAPFLFLYFFLLTISSPSRRLVTSRVVL--ASVPNLKTLEATTLTNGAP-LNKPPY 60
           M L RAP LF  F +L ++S S  + TSR +L  A  P + T   T + +  P  + PP 
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  ----------ENPIDKAPNSNDFVTFDLPNTKEASAPMSNLGFVDCKPKGPIRWSAPSPI 111
                      +     P+  DFV F++P+   A+ P  +     CKPKG +R+SAPS  
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

BLAST of Spg019102 vs. NCBI nr
Match: KGN54792.1 (hypothetical protein Csa_012277 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 43/115 (37.39%), Postives = 60/115 (52.17%), Query Frame = 0

Query: 1   MDLRRAPFLFLY-FFLLTISSPSRRLVTSRVVLASVPNLKTLEATTLTNGAP--LNKPPY 60
           M  R  PFLF+Y FFL  +SSP+  + TSR       N+  LE TTLTN A   + +   
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSR-------NILPLEPTTLTNDALSFVQRSSR 60

Query: 61  ENPIDKAPNSNDFVTFDLPNTK-EASAPMSNLGFVDCKPKGPIRWSAPSPIHNSI 112
                  P S    +  L   + E ++  ++     CKPKGPIRWS+PSP+ N++
Sbjct: 61  HLATTTTPTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNL 108

BLAST of Spg019102 vs. ExPASy TrEMBL
Match: A0A5D3CFX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002500 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-06
Identity = 42/123 (34.15%), Postives = 60/123 (48.78%), Query Frame = 0

Query: 1   MDLRRAPFLFLYFFLLTISSPSRRLVTSRVVL--ASVPNLKTLEATTLTNGAP-LNKPPY 60
           M L RAP LF  F +L ++S S  + TSR +L  A  P + T   T + +  P  + PP 
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  ----------ENPIDKAPNSNDFVTFDLPNTKEASAPMSNLGFVDCKPKGPIRWSAPSPI 111
                      +     P+  DFV F++P+   A+ P  +     CKPKG +R+SAPS  
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

BLAST of Spg019102 vs. ExPASy TrEMBL
Match: A0A0A0L2F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-05
Identity = 43/115 (37.39%), Postives = 60/115 (52.17%), Query Frame = 0

Query: 1   MDLRRAPFLFLY-FFLLTISSPSRRLVTSRVVLASVPNLKTLEATTLTNGAP--LNKPPY 60
           M  R  PFLF+Y FFL  +SSP+  + TSR       N+  LE TTLTN A   + +   
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSR-------NILPLEPTTLTNDALSFVQRSSR 60

Query: 61  ENPIDKAPNSNDFVTFDLPNTK-EASAPMSNLGFVDCKPKGPIRWSAPSPIHNSI 112
                  P S    +  L   + E ++  ++     CKPKGPIRWS+PSP+ N++
Sbjct: 61  HLATTTTPTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNL 108

BLAST of Spg019102 vs. ExPASy TrEMBL
Match: A0A0A0KYN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499280 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.9e-05
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 0

Query: 1   MDLRRAPFLFLYFFLLTISSPSRRLVTSRVVLASVPNLKTLEATTLTNGA-PLNKPPYEN 60
           M LR  PFLF+Y FL  +SS      ++ +++A+  NL  L  TTLTN A P  +     
Sbjct: 1   MALRCFPFLFIYLFLFIMSS------STILIMATSRNLLPLPPTTLTNNALPFTQQSSRY 60

Query: 61  PIDKAPNSNDFVTFDLP-NTKEASAPMSNLGFVDCKPKGPIRWSAPSPIHNSI 112
            +    ++    T  +P   +E ++ M++     C PKGPI WS+PSP  N +
Sbjct: 61  LVATTTSTMTHSTLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGV 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6595583.12.5e-1145.54hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8649707.16.8e-0942.16hypothetical protein Csa_012825 [Cucumis sativus][more]
KAE8649709.16.8e-0942.16hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothe... [more]
TYK09256.15.4e-0634.15hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa][more]
KGN54792.12.7e-0537.39hypothetical protein Csa_012277 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CFX32.6e-0634.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L2F61.3e-0537.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1[more]
A0A0A0KYN04.9e-0534.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499280 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg019102.1Spg019102.1mRNA