Spg019086 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg019086
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold1: 42137884 .. 42139670 (+)
RNA-Seq ExpressionSpg019086
SyntenySpg019086
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTCTGGTGTTCTCTGGTGTTTTGAGTATTGTGGGGCGTACAAGTCGAATCAGAAGCTCTATTTGGTATGGTTGCAAAGCTTATTCAATTTCCTACAACGTTCATGAAGATTTCGTGAGCCAAAAATGACTTTAAGTAGGGTTAATTTCAAGAGTTAGATAAAGGGTAGCAAAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAAGTTTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTTCGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTCGGTGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAATTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATTGATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGGTTTCCAACGGTTGTTCATATTTAGATGTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAACAGTTTCAAGCATGAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAAAGATTTCCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAATGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCTCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAATGTTGGTTGTACTGGGCGTGCCCTACACCACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTAATATGCCTTGCTAGATTTTTAATGACGAACTTACGAGATGTTTTGGAAAGCCTTTATTATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTCCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAAGGATTGGATAATATAGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTTGTATATGTTTTTGGTTGTGACATCTATATCAAGTTATTATCCGAACCAAGTTATGTCAGGGCGGCACCTCGTGTTTGTTGGAAGTTTTTTTTCAGGGATTCCGCTGTGTTCTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGTCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAAGACATTTGCATGAAATTGATGCAACTTTCTGA

mRNA sequence

ATGATCTCTGGTGTTCTCTGGTGTTTTGAGTATTGTGGGGCGTACAAGTCGAATCAGAAGCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGTCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAAGACATTTGCATGAAATTGATGCAACTTTCTGA

Coding sequence (CDS)

ATGATCTCTGGTGTTCTCTGGTGTTTTGAGTATTGTGGGGCGTACAAGTCGAATCAGAAGCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGTCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAAGACATTTGCATGAAATTGATGCAACTTTCTGA

Protein sequence

MISGVLWCFEYCGAYKSNQKLYLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVTRHLHEIDATF
Homology
[Close]
BLAST of Spg019086 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 7.1e-18
Identity = 58/114 (50.88%), Postives = 69/114 (60.53%), Query Frame = 0 

Query: 15   YKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVH 74
            +KSNQKLYL                 VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH
Sbjct: 1404 HKSNQKLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVH 1463

Query: 75   I-------------VNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT 99
            +             ++++ NV  G    +  DDV WLH +FRAK AGGPGGGVT
Sbjct: 1464 VEMFCYFTNQGMSGLHLMLNV--GSVGIVRGDDVCWLHAVFRAKTAGGPGGGVT 1515

[Close]
BLAST of Spg019086 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 7.1e-18
Identity = 58/114 (50.88%), Postives = 69/114 (60.53%), Query Frame = 0 

Query: 15   YKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVH 74
            +KSNQKLYL                 VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH
Sbjct: 1404 HKSNQKLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVH 1463

Query: 75   I-------------VNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT 99
            +             ++++ NV  G    +  DDV WLH +FRAK AGGPGGGVT
Sbjct: 1464 VEMFCYFTNQGMSGLHLMLNV--GSVGIVRGDDVCWLHAVFRAKTAGGPGGGVT 1515

[Close]
BLAST of Spg019086 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 50/89 (56.18%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 23  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQ 82
           +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G 
Sbjct: 93  VVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGS 152

Query: 83  RVSLEEDDVRWLHVIFRAKLAGGPGGGVT 99
              +  DDV WLH +FRAK  GGPGGGVT
Sbjct: 153 TGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg019086 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 50/89 (56.18%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 23  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQ 82
           +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G 
Sbjct: 93  VVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGS 152

Query: 83  RVSLEEDDVRWLHVIFRAKLAGGPGGGVT 99
              +  DDV WLH +FRAK  GGPGGGVT
Sbjct: 153 TGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg019086 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 22  YLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL----- 81
           +LVEIELPVPD LPTSAESSR++SSTW+ELY ESVH+     V+   +  Q   L     
Sbjct: 145 FLVEIELPVPDILPTSAESSRSNSSTWLELYFESVHVEMFYKVILQTKRCQGCILWSAWI 204

Query: 82  -EEDDVRWLHVIFRAKLAGGPGGGVT 99
              DDV WLH IFRAK AGGPGGGVT
Sbjct: 205 VRGDDVCWLHAIFRAKTAGGPGGGVT 230

[Close]
BLAST of Spg019086 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-18
Identity = 58/114 (50.88%), Postives = 69/114 (60.53%), Query Frame = 0 

Query: 15   YKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVH 74
            +KSNQKLYL                 VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH
Sbjct: 1404 HKSNQKLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVH 1463

Query: 75   I-------------VNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT 99
            +             ++++ NV  G    +  DDV WLH +FRAK AGGPGGGVT
Sbjct: 1464 VEMFCYFTNQGMSGLHLMLNV--GSVGIVRGDDVCWLHAVFRAKTAGGPGGGVT 1515

[Close]
BLAST of Spg019086 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-18
Identity = 58/114 (50.88%), Postives = 69/114 (60.53%), Query Frame = 0 

Query: 15   YKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVH 74
            +KSNQKLYL                 VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH
Sbjct: 1404 HKSNQKLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVH 1463

Query: 75   I-------------VNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT 99
            +             ++++ NV  G    +  DDV WLH +FRAK AGGPGGGVT
Sbjct: 1464 VEMFCYFTNQGMSGLHLMLNV--GSVGIVRGDDVCWLHAVFRAKTAGGPGGGVT 1515

[Close]
BLAST of Spg019086 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.8e-18
Identity = 50/89 (56.18%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 23  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQ 82
           +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G 
Sbjct: 93  VVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGS 152

Query: 83  RVSLEEDDVRWLHVIFRAKLAGGPGGGVT 99
              +  DDV WLH +FRAK  GGPGGGVT
Sbjct: 153 TGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg019086 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.8e-18
Identity = 50/89 (56.18%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 23  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQ 82
           +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G 
Sbjct: 93  VVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGS 152

Query: 83  RVSLEEDDVRWLHVIFRAKLAGGPGGGVT 99
              +  DDV WLH +FRAK  GGPGGGVT
Sbjct: 153 TGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg019086 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.9e-18
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 22  YLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL----- 81
           +LVEIELPVPD LPTSAESSR++SSTW+ELY ESVH+     V+   +  Q   L     
Sbjct: 145 FLVEIELPVPDILPTSAESSRSNSSTWLELYFESVHVEMFYKVILQTKRCQGCILWSAWI 204

Query: 82  -EEDDVRWLHVIFRAKLAGGPGGGVT 99
              DDV WLH IFRAK AGGPGGGVT
Sbjct: 205 VRGDDVCWLHAIFRAKTAGGPGGGVT 230

The following BLAST results are available for this feature:
BLAST of Spg019086 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042035.17.1e-1850.88DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK17971.17.1e-1850.88DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0062409.11.2e-1756.18reverse transcriptase [Cucumis melo var. makuwa][more]
TYK26572.11.2e-1756.18putative Retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0037581.12.1e-1761.63reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Spg019086 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg019086 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TKT03.4e-1850.88Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5D3D1503.4e-1850.88Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A5A7V9N35.8e-1856.18Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3DSY75.8e-1856.18Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5D3BTP39.9e-1861.63Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
BLAST of Spg019086 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg019086.1Spg019086.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016779 nucleotidyltransferase activity