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Spg019023 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCAAAATTTGAAAATCGATCAGAGAGAGAGAGAGAGAGGGAGAAAAATGGCGTCGGTTCGAGGAGGTATGAAAGATTTCTACAAGCAAAAGAAAAAGAGTGGAATCTCCAAACCCAACAACAAGGCTTCAAAGCCCTCTTCTAGGAAAACCAAATCTCCGGCAAACTCCGCAACTTTGGGCTCCGGTGGCGTCCAACCGGCGGCTCTTATTTCTCACGGCTTCCTGGATCTTCAAGGTCTCTCTCTCTCTTCTTTTCTGGTCTCTCCAATTCCTCACGTTCCTGGAAAATTATTTTCTTCATTATGTTTCTTGAAACTGCAGTTACTGTTGTGGAGTTTGTGCCTCGCGATTGTGATTTGTGAAGGATTAAGTATGTTGCATTCTACAAGTTTTTGGATATCAATTGCAATTAAGTTATTCAATAGTTGAATTAAATACTCTCAATGTTTGGATCACTTTTAATGTTTCGGATGAAGAATATTATCGAGTTAATGTGTTTAGTCTTATGCCTCGTGATTATGAAGGATTAGGCATGTTGAAGTAATTGGATATTTGAATTAAGACCATCCATTGTCTGGGTTTCTTTAACTTCTGCTTCATGGTTATGAAGGATTAAGCATAGAGTCAAGAGGTTGTGGGATACCAGTTTCTATTAAGTTCTGTAATAGTTGAATTATAGACACCTAATGTTTGGATTTCTTTAAACTTTCGACTGCAATACTGTTATCTGACTTATGTGTTTGGACGTCTGATATGGCGCTATACTGCCGGGATATTTATGTATCTTTTGCTTTGTCGATTTTTATAGACTGCATTTTGTTTCATTTTGTTTTAGATGATTATGGTGAGTCTGAGAATATGGTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTTGGAATGACCAGAATGGAACGGTGGGAGCGTGCCTGTAATCTTGGTTTGAACCCTCCAAAAGACATTGAGACACTCTTAAAGGCCGGCAAAGTGCAGTTAGAGTGCTTGTGGGATTCCCGAGTTTAAAGACTAGTATGTTAGCTGTGTTATTTTTGATTAATGTATGAAGTGTGTGTTGTGTTTTGGGACAAAATGTTCAGCCTCTGGCTGAAATGATAATCACTTCTCCTATTATGTGAATGGGCTAGAATGTTTACTGATATTAGCTCTCTTGTTATTTACTTTTCAGTTATGTGTTGCAAACGACGAGTAGTTGTATAGTTAAACTTGGTGAATTTTTTCCTTTCCCAATGTTGTTATAATTTGC ATGGCGTCGGTTCGAGGAGGTATGAAAGATTTCTACAAGCAAAAGAAAAAGAGTGGAATCTCCAAACCCAACAACAAGGCTTCAAAGCCCTCTTCTAGGAAAACCAAATCTCCGGCAAACTCCGCAACTTTGGGCTCCGGTGGCGTCCAACCGGCGGCTCTTATTTCTCACGGCTTCCTGGATCTTCAAGTTACTGTTGTGGAGTTTGTGCCTCGCGATTGTGATTTGATTAAGCATAGAGTCAAGAGGTTGTGGGATACCAATGATTATGGTGAGTCTGAGAATATGGTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTTGGAATGACCAGAATGGAACGGTGGGAGCGTGCCTGTAATCTTGGTTTGAACCCTCCAAAAGACATTGAGACACTCTTAAAGGCCGGCAAAGTGCAGTTAGAGTGCTTGTGGGATTCCCGAGTTTAA ATGGCGTCGGTTCGAGGAGGTATGAAAGATTTCTACAAGCAAAAGAAAAAGAGTGGAATCTCCAAACCCAACAACAAGGCTTCAAAGCCCTCTTCTAGGAAAACCAAATCTCCGGCAAACTCCGCAACTTTGGGCTCCGGTGGCGTCCAACCGGCGGCTCTTATTTCTCACGGCTTCCTGGATCTTCAAGTTACTGTTGTGGAGTTTGTGCCTCGCGATTGTGATTTGATTAAGCATAGAGTCAAGAGGTTGTGGGATACCAATGATTATGGTGAGTCTGAGAATATGGTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTTGGAATGACCAGAATGGAACGGTGGGAGCGTGCCTGTAATCTTGGTTTGAACCCTCCAAAAGACATTGAGACACTCTTAAAGGCCGGCAAAGTGCAGTTAGAGTGCTTGTGGGATTCCCGAGTTTAA MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV Homology
BLAST of Spg019023 vs. NCBI nr
Match: XP_038875328.1 (DNA polymerase delta subunit 4 [Benincasa hispida]) HSP 1 Score: 209.1 bits (531), Expect = 2.6e-50 Identity = 110/151 (72.85%), Postives = 116/151 (76.82%), Query Frame = 0
BLAST of Spg019023 vs. NCBI nr
Match: XP_008467236.1 (PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo] >KAA0055161.1 DNA polymerase delta subunit 4 [Cucumis melo var. makuwa] >TYK00302.1 DNA polymerase delta subunit 4 [Cucumis melo var. makuwa]) HSP 1 Score: 207.6 bits (527), Expect = 7.5e-50 Identity = 110/151 (72.85%), Postives = 117/151 (77.48%), Query Frame = 0
BLAST of Spg019023 vs. NCBI nr
Match: XP_004143634.1 (uncharacterized protein LOC101209940 [Cucumis sativus] >KGN50409.1 hypothetical protein Csa_000175 [Cucumis sativus]) HSP 1 Score: 199.9 bits (507), Expect = 1.6e-47 Identity = 107/151 (70.86%), Postives = 114/151 (75.50%), Query Frame = 0
BLAST of Spg019023 vs. NCBI nr
Match: XP_022957680.1 (uncharacterized protein LOC111459143 [Cucurbita moschata]) HSP 1 Score: 190.3 bits (482), Expect = 1.2e-44 Identity = 103/151 (68.21%), Postives = 111/151 (73.51%), Query Frame = 0
BLAST of Spg019023 vs. NCBI nr
Match: XP_023532644.1 (uncharacterized protein LOC111794744 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 188.7 bits (478), Expect = 3.6e-44 Identity = 102/151 (67.55%), Postives = 110/151 (72.85%), Query Frame = 0
BLAST of Spg019023 vs. ExPASy Swiss-Prot
Match: Q3T0X9 (DNA polymerase delta subunit 4 OS=Bos taurus OX=9913 GN=POLD4 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 3.3e-08 Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of Spg019023 vs. ExPASy Swiss-Prot
Match: Q9CWP8 (DNA polymerase delta subunit 4 OS=Mus musculus OX=10090 GN=Pold4 PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 5.6e-08 Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 0
BLAST of Spg019023 vs. ExPASy Swiss-Prot
Match: Q9HCU8 (DNA polymerase delta subunit 4 OS=Homo sapiens OX=9606 GN=POLD4 PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 9.6e-08 Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 0
BLAST of Spg019023 vs. ExPASy Swiss-Prot
Match: O59835 (DNA polymerase delta subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cdm1 PE=2 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 3.1e-06 Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 0
BLAST of Spg019023 vs. ExPASy TrEMBL
Match: A0A5A7UNL0 (DNA polymerase delta subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00460 PE=4 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 3.6e-50 Identity = 110/151 (72.85%), Postives = 117/151 (77.48%), Query Frame = 0
BLAST of Spg019023 vs. ExPASy TrEMBL
Match: A0A1S3CT23 (DNA polymerase delta subunit 4 OS=Cucumis melo OX=3656 GN=LOC103504636 PE=4 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 3.6e-50 Identity = 110/151 (72.85%), Postives = 117/151 (77.48%), Query Frame = 0
BLAST of Spg019023 vs. ExPASy TrEMBL
Match: A0A0A0KND6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172885 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 7.6e-48 Identity = 107/151 (70.86%), Postives = 114/151 (75.50%), Query Frame = 0
BLAST of Spg019023 vs. ExPASy TrEMBL
Match: A0A6J1H180 (uncharacterized protein LOC111459143 OS=Cucurbita moschata OX=3662 GN=LOC111459143 PE=4 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 6.0e-45 Identity = 103/151 (68.21%), Postives = 111/151 (73.51%), Query Frame = 0
BLAST of Spg019023 vs. ExPASy TrEMBL
Match: A0A6J1K4T3 (uncharacterized protein LOC111491182 OS=Cucurbita maxima OX=3661 GN=LOC111491182 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 1.5e-43 Identity = 101/151 (66.89%), Postives = 110/151 (72.85%), Query Frame = 0
BLAST of Spg019023 vs. TAIR 10
Match: AT1G09815.1 (polymerase delta 4 ) HSP 1 Score: 133.3 bits (334), Expect = 1.7e-31 Identity = 77/154 (50.00%), Postives = 92/154 (59.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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