Spg018333 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTCGCAGTTATCTCTAACCCGTCGCTCGAGATCCAGTCGTAGTTGTGTGTGCCATAAGGCGACGAACATTGATCACAATTCCAGGGGAAAAGTTGAGGGGCCTGAGGTGCCGTATTCGCAAAAGTTGCCGTTGTGATCATCATGGCCGGAAAAGAGCAACGCTTGCCGAATAGAGACGAGCTCGCTGAATCCCTCAACGAATTCTTCACCAGCGTATCCGAAATGGTCAAATCGGACCTTCTTGTAATCTTCCAAACCCCTAATTCTCTCAGTTTCATCTTGCTATTTCGCTATATCTTTCGATTGGGTCTCTCTGTATGATTTGATTCTGCTCTCTGGTCGATGCTGGTTGTTCAATGTGTTGAGTTATTCTAAGAGAGAAGTGGCTCCGGCTATGAATTGGTTCTTATAATTAGTTTTTGAGCGTTTTCATTGAATATTATGAAGGTTTTGAAGATTTATCGCCCATGTTTTCTGGTTCTGAAGTGCGTTGTGACTATTGTGGGGTTTGGAGTTCACAGTAGTTGAAAGCTTGATTGTGATTGGCAAAACCATCAAACCATATCCCATGCTATCTATCTGGCCTTGAATGACCAATTTTGGTCTTTCGCAATCTTCTTCTTCTTTGTAATTCCCATGAAACGTTTACTTTTCATGTAGTACTATTGTCATCAAAACCTGAAAATCTGGAAATATGTTTCTAATGTTTTATCGATTTCTTGTTAGCTTTAACAATGATAAATATCGAGGTCTGCTTTAGTCAATGAATCTAAGAGGTGGGAATCAGCCTTCAAAGCCTTGTGTTTGGAGTGTTTCCCGGAAAAATGATGGTGGATTTGTTATTTTTCTCATATAGGGATCAAGTAATCAGCTGGCACTTTTAGAGAAAATGAATCTCAGGGTGGCCGAAGAGTACAAAGGTTTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGTCAAAGAGTGGTGGCTTTGATGAGTACATAAACCAGATTGAGAAAATAGAGCATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGACAAGCATGTTTCCATGCTGGAGTCAAAAGTGTTGTCCGTTTGTCAAAACAAACCTTCATGAATAAATTTCTTTTTTCGTGTTCAAAATTCAGAACCGTTCCTTTCAGAATATTTTTGCTTCTATATTGCTCATATTGTCGAATCTTTTACGATATCTCATTTGTTGGCAGTTGATGGTCCTAAATCTGTAGTGTTTTCTGAATGACTGATGCTAATTATATACCACAGAATCTTTGTTTAGTTAGTTTTGATTGTTATGGGGAAATAGTCCTCTCTCAGAAACTGTTCTTGGTGTCTTGTCTGTTACAGGTGAAACTGAATTATGCAGGATTAGGAAGATTACAAAATTAATGTATTATGCTATCATGATGCACCATTTAGAAGAAACCATACCAGTTTATCTATACTTATAAGTCATAACATGTGGAAATGACAGAGAAGTGAACAAGCGCATGTCAACATAGCACATAAAAATGAGTGAGTAGATGCATGGAAAGTTAGGGAAGCAGGAAAGGCAAGTAAAGAGAAAAAGGGTTATTCAAGGCTTGTTTGGTGTTAGGTCTTAATCCAATTTAGATTTAAGGAATGAAGCAGAAACTTTTGCTTGGGAAGCCCACTTTCAAAATTTTTTAGAGATCCGAAAAGGTTGAAAACACAGAGTTCAATTGAATGAAAATGAAGTTTCGTCTTAGTTCGTAAAGATGGTGTTATAATTTATAATAACCAGATGTGCATTGGAGAGGTGAGTGAAGCAAGCAGTAAACTTGAGGGAGTTCTTCAACCTTACGTGGGATTTCTTTTCTAGTGATACCATTCTACTGTGCATTTGAGGGAAGAACTTCTTCTGATAGCAGGGAGATCCGAAACCAGACTCTGCATTCACCATGGAGCTGTGAATCTCATGGGATAAAGGTATTTTTCTTCTCATAGAATGCAACATTGTCTTTGCCTAGGGAGTTTTTACTCAATAATCAGTATGTTTTCTAATCTTATCTTTTCCTTTCTTTTCTTTACATGTGCAGGTATTATAATTCTCAATCATTGTTTAATTTTTCTGGAAAAGAGGAAGTAGATTGCATGTTCTAATTGATTCCTTCTTCTAAATTTAAAGGTATGGATTGTTTGGGTTTCTTGGATAATCATTCAACTTTTTAAAATTGAGCCTATAAATACTAGTTTCACCTAGTTTTACAAATGTTTTCAAAATCCAAACCAAGTTTTGAAAACTAAGAAAAAAAGTAGTTCTTAGAATTTTTTTCTTTTGTTTTTGGAATTCGGCTAAGAATTCAAATGTTTACTTAAGAGGGATGAAAACCGAATGATTATCAAACGAGGTCTGAGTTGCTTCCTCCATTTTTTGCTTTTCACAAATTTCAGTTCCATTGAGCTGCATAAATCAGTCCTCCATAAATTGGGTTGTCAACCAGGATCAAAAGTCTTGGGTACAAAATGGAAAGAGGAGAGGAAGAGAGAGTGGGTGATTCAAGGGAGGGGAATGAGCAAGGGAAGGAGAGGAAGGAAGGAGAGAGAGGAAATATGAGAGAGAAATGGAGTAAGATAGATCTAATTTTTATATTTATCATAGTTTGAGGTTTTAATTTTTGCATTTATTAGTTTAAGTGTTTAATTTTTACTCTTGAAAGTTTAGGGGTCTAGGGTTAAATTTTGCACTTGAAAGTTTAGAGGGGTGCAATTGTTACCACCACCATACTAAGGATGGTTTTTGTG ATGGCCGGAAAAGAGCAACGCTTGCCGAATAGAGACGAGCTCGCTGAATCCCTCAACGAATTCTTCACCAGCGTATCCGAAATGGTCAAATCGGACCTTCTTGGATCAAGTAATCAGCTGGCACTTTTAGAGAAAATGAATCTCAGGGTGGCCGAAGAGTACAAAGGTTTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGTCAAAGAGTGGTGGCTTTGATGAGTACATAAACCAGATTGAGAAAATAGAGCATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGACAAGCATGTTTCCATGCTGGATCCTCTCTCAGAAACTGTTCTTGGTGTCTTGTCTGTTACAGTGATACCATTCTACTGTGCATTTGAGGGAAGAACTTCTTCTGATAGCAGGGAGATCCGAAACCAGACTCTGCATTCACCATGGAGCTGTGAATCTCATGGGATAAAGGTATTATAA ATGGCCGGAAAAGAGCAACGCTTGCCGAATAGAGACGAGCTCGCTGAATCCCTCAACGAATTCTTCACCAGCGTATCCGAAATGGTCAAATCGGACCTTCTTGGATCAAGTAATCAGCTGGCACTTTTAGAGAAAATGAATCTCAGGGTGGCCGAAGAGTACAAAGGTTTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGTCAAAGAGTGGTGGCTTTGATGAGTACATAAACCAGATTGAGAAAATAGAGCATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGACAAGCATGTTTCCATGCTGGATCCTCTCTCAGAAACTGTTCTTGGTGTCTTGTCTGTTACAGTGATACCATTCTACTGTGCATTTGAGGGAAGAACTTCTTCTGATAGCAGGGAGATCCGAAACCAGACTCTGCATTCACCATGGAGCTGTGAATCTCATGGGATAAAGGTATTATAA MAGKEQRLPNRDELAESLNEFFTSVSEMVKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLDPLSETVLGVLSVTVIPFYCAFEGRTSSDSREIRNQTLHSPWSCESHGIKVL Homology
BLAST of Spg018333 vs. NCBI nr
Match: XP_004137147.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus] >KGN53763.1 hypothetical protein Csa_014951 [Cucumis sativus]) HSP 1 Score: 201.4 bits (511), Expect = 5.7e-48 Identity = 103/110 (93.64%), Postives = 108/110 (98.18%), Query Frame = 0
BLAST of Spg018333 vs. NCBI nr
Match: XP_038880795.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida]) HSP 1 Score: 198.4 bits (503), Expect = 4.8e-47 Identity = 102/110 (92.73%), Postives = 108/110 (98.18%), Query Frame = 0
BLAST of Spg018333 vs. NCBI nr
Match: XP_008455567.1 (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis melo]) HSP 1 Score: 197.2 bits (500), Expect = 1.1e-46 Identity = 101/110 (91.82%), Postives = 107/110 (97.27%), Query Frame = 0
BLAST of Spg018333 vs. NCBI nr
Match: XP_022949044.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschata] >XP_022997803.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita maxima]) HSP 1 Score: 191.8 bits (486), Expect = 4.5e-45 Identity = 98/107 (91.59%), Postives = 105/107 (98.13%), Query Frame = 0
BLAST of Spg018333 vs. NCBI nr
Match: KAG7036775.1 (Kanadaptin [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 191.0 bits (484), Expect = 7.7e-45 Identity = 97/107 (90.65%), Postives = 105/107 (98.13%), Query Frame = 0
BLAST of Spg018333 vs. ExPASy Swiss-Prot
Match: F4K657 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis thaliana OX=3702 GN=BLOS2 PE=1 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.5e-30 Identity = 67/101 (66.34%), Postives = 85/101 (84.16%), Query Frame = 0
BLAST of Spg018333 vs. ExPASy Swiss-Prot
Match: Q54Y67 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Dictyostelium discoideum OX=44689 GN=bloc1s2 PE=3 SV=2) HSP 1 Score: 62.8 bits (151), Expect = 4.2e-09 Identity = 33/103 (32.04%), Postives = 57/103 (55.34%), Query Frame = 0
BLAST of Spg018333 vs. ExPASy Swiss-Prot
Match: Q6QNY1 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens OX=9606 GN=BLOC1S2 PE=1 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 2.4e-04 Identity = 28/107 (26.17%), Postives = 49/107 (45.79%), Query Frame = 0
BLAST of Spg018333 vs. ExPASy Swiss-Prot
Match: Q4R7C8 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Macaca fascicularis OX=9541 GN=BLOC1S2 PE=2 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 2.4e-04 Identity = 28/107 (26.17%), Postives = 49/107 (45.79%), Query Frame = 0
BLAST of Spg018333 vs. ExPASy Swiss-Prot
Match: Q32WR5 (Biogenesis of lysosome-related organelles complex-1 subunit 2 OS=Rattus norvegicus OX=10116 GN=Bloc1s2 PE=2 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 4.0e-04 Identity = 28/107 (26.17%), Postives = 49/107 (45.79%), Query Frame = 0
BLAST of Spg018333 vs. ExPASy TrEMBL
Match: A0A0A0KW18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G123360 PE=3 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 2.8e-48 Identity = 103/110 (93.64%), Postives = 108/110 (98.18%), Query Frame = 0
BLAST of Spg018333 vs. ExPASy TrEMBL
Match: A0A1S3C0T0 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucumis melo OX=3656 GN=LOC103495715 PE=3 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 5.2e-47 Identity = 101/110 (91.82%), Postives = 107/110 (97.27%), Query Frame = 0
BLAST of Spg018333 vs. ExPASy TrEMBL
Match: A0A6J1KEZ0 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111492648 PE=3 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 2.2e-45 Identity = 98/107 (91.59%), Postives = 105/107 (98.13%), Query Frame = 0
BLAST of Spg018333 vs. ExPASy TrEMBL
Match: A0A6J1GBP4 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111452507 PE=3 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 2.2e-45 Identity = 98/107 (91.59%), Postives = 105/107 (98.13%), Query Frame = 0
BLAST of Spg018333 vs. ExPASy TrEMBL
Match: A0A6J1DL99 (biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111022173 PE=3 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 4.9e-37 Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of Spg018333 vs. TAIR 10
Match: AT5G49550.1 (Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1. ) HSP 1 Score: 134.0 bits (336), Expect = 1.0e-31 Identity = 67/101 (66.34%), Postives = 85/101 (84.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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