Spg018112 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018112
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationscaffold9: 31272181 .. 31273060 (-)
RNA-Seq ExpressionSpg018112
SyntenySpg018112
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATCGGAGAATATCTTACCAGACCAAGCAACATTTGCCAGTGTTCTTCGAGCATGCGCTGGATTGTCTTCTTTAGAAAACGGTCAAGAGATTCATTCCCTTATCCTCCATATTGGCTTTAACATGCATGAAATAACCTGTAGTGCTTTTATAGACATGTATGCAAAATGTGGCGATGTTAAAAGCTCCGTTCAGGTTTTTCATGAAATGGGAAGTAAAAACAGTGTCGTTTCTTGGAACTCCATGATAGTTGGACTTGCTAAGAATGGCTATGCAGAAGAAGCACTAGAAATATTTACTCAAATGGAGAAAGAATCCATCCTGCCTGATGATGTCACATTCCTTGGTGTTCTTTCTGCTTGTAGCCATGCTGGGCGGGTGTCTGAAGGTCGAAAGATCTTCGACCTGATGGTTAGCTGTTGGGTTTCCAGGGTGAGTAAAAATAAGATATAAAAAGACTCTAGAACTCTGTGCAAGTATACACAGTCCGCAGCAAGTAATAAGTATTTATCGAATCCAAGGTCTGAACTAGCTTTCACTTTATCTATTTTGTTTAGTTTTTCAATGGTTTCAAAAGTGGTTAAAATGATTGGTTTTTATGGAATGCTGAAGCAAAAGAAATGACAGAACAGGAAATAAACAAATAGGCAGACAGATTAGAAACAGACGCTGGTCAGGATTTAACAATTGTTTTAAAAGATGCTCTAGCAATATTATTGATCATGCAAAACTCTCGCAGTCTCATTAGCAGATTCCTCTCGGAACTCTGGATTTTTTAGAATATGTTTCAACTTCAATGAAGCTCAATCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCTAG

mRNA sequence

ATGCGATCGGAGAATATCTTACCAGACCAAGCAACATTTGCCAGTGTTCTTCGAGCATGCGCTGGATTGTCTTCTTTAGAAAACGGTCAAGAGATTCATTCCCTTATCCTCCATATTGGCTTTAACATGCATGAAATAACCTGTAGTGCTTTTATAGACATGTATGCAAAATGTGGCGATGTTAAAAGCTCCGTTCAGGTTTTTCATGAAATGGGAAGTAAAAACAGTGTCGTTTCTTGGAACTCCATGATAGTTGGACTTGCTAAGAATGGCTATGCAGAAGAAGCACTAGAAATATTTACTCAAATGGAGAAAGAATCCATCCTGCCTGATGATGTCACATTCCTTGGTGTTCTTTCTGCTTGTAGCCATGCTGGGCGGGTGTCTGAAGGTCGAAAGATCTTCGACCTGATGGTTAGCTGTTGGGTTTCCAGGCTCAATCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCTAG

Coding sequence (CDS)

ATGCGATCGGAGAATATCTTACCAGACCAAGCAACATTTGCCAGTGTTCTTCGAGCATGCGCTGGATTGTCTTCTTTAGAAAACGGTCAAGAGATTCATTCCCTTATCCTCCATATTGGCTTTAACATGCATGAAATAACCTGTAGTGCTTTTATAGACATGTATGCAAAATGTGGCGATGTTAAAAGCTCCGTTCAGGTTTTTCATGAAATGGGAAGTAAAAACAGTGTCGTTTCTTGGAACTCCATGATAGTTGGACTTGCTAAGAATGGCTATGCAGAAGAAGCACTAGAAATATTTACTCAAATGGAGAAAGAATCCATCCTGCCTGATGATGTCACATTCCTTGGTGTTCTTTCTGCTTGTAGCCATGCTGGGCGGGTGTCTGAAGGTCGAAAGATCTTCGACCTGATGGTTAGCTGTTGGGTTTCCAGGCTCAATCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCTAG

Protein sequence

MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGDVKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLSACSHAGRVSEGRKIFDLMVSCWVSRLNRSSTRQLAIPSSVTGVHQYTMI
Homology
[Close]
BLAST of Spg018112 vs. NCBI nr
Match: KAG6592177.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 249.2 bits (635), Expect = 2.5e-62
Identity = 121/140 (86.43%), Postives = 133/140 (95.00%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           MRSEN+LPDQATFASVLRAC+GLSSL+NGQEIHSLI H GFNM EITCS+ IDMYAKCGD
Sbjct: 727 MRSENMLPDQATFASVLRACSGLSSLQNGQEIHSLIFHTGFNMDEITCSSLIDMYAKCGD 786

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           V+SSV+VFHEM  +NSVVSWNSMIVGLAKNGY+EEALEIF QME++SI+PDDVTFLGVLS
Sbjct: 787 VESSVKVFHEMRCRNSVVSWNSMIVGLAKNGYSEEALEIFRQMEQQSIMPDDVTFLGVLS 846

Query: 121 ACSHAGRVSEGRKIFDLMVS 141
           ACSHAGRVSEGRKIFD+MVS
Sbjct: 847 ACSHAGRVSEGRKIFDVMVS 866

[Close]
BLAST of Spg018112 vs. NCBI nr
Match: KAG7025038.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.2 bits (635), Expect = 2.5e-62
Identity = 121/140 (86.43%), Postives = 133/140 (95.00%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           MRSEN+LPDQATFASVLRAC+GLSSL+NGQEIHSLI H GFNM EITCS+ IDMYAKCGD
Sbjct: 703 MRSENMLPDQATFASVLRACSGLSSLQNGQEIHSLIFHTGFNMDEITCSSLIDMYAKCGD 762

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           V+SSV+VFHEM  +NSVVSWNSMIVGLAKNGY+EEALEIF QME++SI+PDDVTFLGVLS
Sbjct: 763 VESSVKVFHEMRCRNSVVSWNSMIVGLAKNGYSEEALEIFRQMEQQSIMPDDVTFLGVLS 822

Query: 121 ACSHAGRVSEGRKIFDLMVS 141
           ACSHAGRVSEGRKIFD+MVS
Sbjct: 823 ACSHAGRVSEGRKIFDVMVS 842

[Close]
BLAST of Spg018112 vs. NCBI nr
Match: XP_023534935.1 (pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249.2 bits (635), Expect = 2.5e-62
Identity = 121/140 (86.43%), Postives = 133/140 (95.00%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           MRSENILPDQATFASVLRAC+GLSSL+NGQEIHSLI H GFNM EITCS+ IDMYAKCGD
Sbjct: 727 MRSENILPDQATFASVLRACSGLSSLQNGQEIHSLIFHTGFNMDEITCSSLIDMYAKCGD 786

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           V+SSV+VFHEM  +NSVVSWNSMIVGLAKNGY+EEALEIF +ME++SI+PDDVTFLGVLS
Sbjct: 787 VESSVKVFHEMRCRNSVVSWNSMIVGLAKNGYSEEALEIFREMEQQSIMPDDVTFLGVLS 846

Query: 121 ACSHAGRVSEGRKIFDLMVS 141
           ACSHAGRVSEGRKIFD+MVS
Sbjct: 847 ACSHAGRVSEGRKIFDVMVS 866

[Close]
BLAST of Spg018112 vs. NCBI nr
Match: XP_022935750.1 (pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita moschata])

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 120/140 (85.71%), Postives = 132/140 (94.29%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           MRSEN+LPDQA FASVLRAC+GLSSL+NGQEIHSLI H GFNM EITCS+ IDMYAKCGD
Sbjct: 727 MRSENMLPDQAMFASVLRACSGLSSLQNGQEIHSLIFHTGFNMDEITCSSLIDMYAKCGD 786

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           V+SSV+VFHEM  +NSVVSWNSMIVGLAKNGY+EEALEIF QME++SI+PDDVTFLGVLS
Sbjct: 787 VESSVKVFHEMRCRNSVVSWNSMIVGLAKNGYSEEALEIFRQMEQQSIMPDDVTFLGVLS 846

Query: 121 ACSHAGRVSEGRKIFDLMVS 141
           ACSHAGRVSEGRKIFD+MVS
Sbjct: 847 ACSHAGRVSEGRKIFDVMVS 866

[Close]
BLAST of Spg018112 vs. NCBI nr
Match: XP_038899907.1 (pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Benincasa hispida])

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 122/141 (86.52%), Postives = 133/141 (94.33%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           MRSENILPDQATFASVLRACAGLSSL+NGQEIHSLI H GFNM EITCS+ IDMYAKCGD
Sbjct: 692 MRSENILPDQATFASVLRACAGLSSLQNGQEIHSLIFHTGFNMDEITCSSLIDMYAKCGD 751

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQME-KESILPDDVTFLGVL 120
           VKSSVQVFHEM  KNSV+SWNSMIVGLAKNGYAEEALEIF Q+E ++SI+PD+VTFLGVL
Sbjct: 752 VKSSVQVFHEMRRKNSVISWNSMIVGLAKNGYAEEALEIFNQLEQQQSIIPDEVTFLGVL 811

Query: 121 SACSHAGRVSEGRKIFDLMVS 141
           SACSHAGRVSEGRKIF++MV+
Sbjct: 812 SACSHAGRVSEGRKIFNMMVN 832

[Close]
BLAST of Spg018112 vs. ExPASy Swiss-Prot
Match: Q9SS83 (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E88 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.6e-46
Identity = 85/139 (61.15%), Postives = 112/139 (80.58%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           MR + +LPDQATF +VLR C+ LSSL  G+ IHSLI H+  ++ E+T +  IDMYAKCGD
Sbjct: 723 MRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGD 782

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           +K S QVF EM  +++VVSWNS+I G AKNGYAE+AL+IF  M +  I+PD++TFLGVL+
Sbjct: 783 MKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLT 842

Query: 121 ACSHAGRVSEGRKIFDLMV 140
           ACSHAG+VS+GRKIF++M+
Sbjct: 843 ACSHAGKVSDGRKIFEMMI 861

[Close]
BLAST of Spg018112 vs. ExPASy Swiss-Prot
Match: Q56X05 (Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX=3702 GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-30
Identity = 64/139 (46.04%), Postives = 95/139 (68.35%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           M  E I+PD+ T ++V+ ACA L  LE G+E+H   L  GF +     SA +DMY+KCG 
Sbjct: 278 MMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGS 337

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           ++ ++ VF  +  KN +  WNS+I GLA +G+A+EAL++F +ME ES+ P+ VTF+ V +
Sbjct: 338 LERALLVFFNLPKKN-LFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFT 397

Query: 121 ACSHAGRVSEGRKIFDLMV 140
           AC+HAG V EGR+I+  M+
Sbjct: 398 ACTHAGLVDEGRRIYRSMI 415

[Close]
BLAST of Spg018112 vs. ExPASy Swiss-Prot
Match: Q9FI49 (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 60/134 (44.78%), Postives = 92/134 (68.66%), Query Frame = 0 

Query: 5   NILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGDVKSS 64
           +I P++ +FAS L ACA L  L + + +HSL++  G  ++ I  SA +D+YAKCGD+ +S
Sbjct: 160 DIKPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTS 219

Query: 65  VQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLSACSH 124
            +VF+ +  +N V  WN+MI G A +G A EA+ +F++ME E + PD +TFLG+L+ CSH
Sbjct: 220 REVFYSV-KRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSH 279

Query: 125 AGRVSEGRKIFDLM 139
            G + EG++ F LM
Sbjct: 280 CGLLEEGKEYFGLM 292

[Close]
BLAST of Spg018112 vs. ExPASy Swiss-Prot
Match: Q9FXA9 (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.9e-29
Identity = 60/138 (43.48%), Postives = 90/138 (65.22%), Query Frame = 0 

Query: 3   SENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGDVK 62
           S+  +P+  TF S++ ACA +++L  GQ++H  I   GFN +    +A IDMYAKCG++ 
Sbjct: 306 SQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIP 365

Query: 63  SSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLSAC 122
            S +VF E+  + ++VSW SM++G   +GY  EA+E+F +M    I PD + F+ VLSAC
Sbjct: 366 DSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSAC 425

Query: 123 SHAGRVSEGRKIFDLMVS 141
            HAG V +G K F++M S
Sbjct: 426 RHAGLVEKGLKYFNVMES 443

[Close]
BLAST of Spg018112 vs. ExPASy Swiss-Prot
Match: Q1PFQ9 (Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E34 PE=2 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 5.0e-29
Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           M+     P+ +TFASV+ AC+ L+S E GQ++H+ I+  G   H    S+ +DMYAKCG 
Sbjct: 264 MQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGG 323

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           +  + +VF +M  KN V SW SMI G  KNG  EEALE+FT+M++  I P+ VTFLG LS
Sbjct: 324 INDARRVFDQMQEKN-VFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALS 383

Query: 121 ACSHAGRVSEGRKIFDLM 139
           ACSH+G V +G +IF+ M
Sbjct: 384 ACSHSGLVDKGYEIFESM 400

[Close]
BLAST of Spg018112 vs. ExPASy TrEMBL
Match: A0A6J1IHS2 (pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111473755 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.0e-62
Identity = 121/140 (86.43%), Postives = 131/140 (93.57%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           MRSENILPDQATFASVLRAC+GLSSL+NGQEIHSLI H GFNM EITCS+ IDMYAKCGD
Sbjct: 727 MRSENILPDQATFASVLRACSGLSSLQNGQEIHSLIFHTGFNMDEITCSSLIDMYAKCGD 786

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           V SSVQVFHEM  +NSVVSWNSMIVGLAKNGY+EEALEIF +ME++SI+PDDVTFLGVLS
Sbjct: 787 VGSSVQVFHEMCCRNSVVSWNSMIVGLAKNGYSEEALEIFREMEQQSIMPDDVTFLGVLS 846

Query: 121 ACSHAGRVSEGRKIFDLMVS 141
           ACSHAGRV EGRKIFD+MVS
Sbjct: 847 ACSHAGRVFEGRKIFDVMVS 866

[Close]
BLAST of Spg018112 vs. ExPASy TrEMBL
Match: A0A6J1FBI8 (pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111442573 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.0e-62
Identity = 120/140 (85.71%), Postives = 132/140 (94.29%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           MRSEN+LPDQA FASVLRAC+GLSSL+NGQEIHSLI H GFNM EITCS+ IDMYAKCGD
Sbjct: 727 MRSENMLPDQAMFASVLRACSGLSSLQNGQEIHSLIFHTGFNMDEITCSSLIDMYAKCGD 786

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           V+SSV+VFHEM  +NSVVSWNSMIVGLAKNGY+EEALEIF QME++SI+PDDVTFLGVLS
Sbjct: 787 VESSVKVFHEMRCRNSVVSWNSMIVGLAKNGYSEEALEIFRQMEQQSIMPDDVTFLGVLS 846

Query: 121 ACSHAGRVSEGRKIFDLMVS 141
           ACSHAGRVSEGRKIFD+MVS
Sbjct: 847 ACSHAGRVSEGRKIFDVMVS 866

[Close]
BLAST of Spg018112 vs. ExPASy TrEMBL
Match: A0A5A7TIQ6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00290 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.0e-61
Identity = 117/140 (83.57%), Postives = 131/140 (93.57%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           MRS+NILPDQATFASVLRACAG+SSL+ GQE+HSLI H GFNM EITCS+ IDMYAKCGD
Sbjct: 705 MRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGD 764

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           VK S+QVFHEM  +NSV+SWNSMIVGLAKNGYAEEALEIF QME++SI+PD+VTFLGVLS
Sbjct: 765 VKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLS 824

Query: 121 ACSHAGRVSEGRKIFDLMVS 141
           ACSHAGRVSEGRK+FDLMV+
Sbjct: 825 ACSHAGRVSEGRKVFDLMVN 844

[Close]
BLAST of Spg018112 vs. ExPASy TrEMBL
Match: A0A5D3D800 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00860 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.0e-61
Identity = 117/140 (83.57%), Postives = 131/140 (93.57%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           MRS+NILPDQATFASVLRACAG+SSL+ GQE+HSLI H GFNM EITCS+ IDMYAKCGD
Sbjct: 705 MRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGD 764

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           VK S+QVFHEM  +NSV+SWNSMIVGLAKNGYAEEALEIF QME++SI+PD+VTFLGVLS
Sbjct: 765 VKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLS 824

Query: 121 ACSHAGRVSEGRKIFDLMVS 141
           ACSHAGRVSEGRK+FDLMV+
Sbjct: 825 ACSHAGRVSEGRKVFDLMVN 844

[Close]
BLAST of Spg018112 vs. ExPASy TrEMBL
Match: E5GCI3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.0e-61
Identity = 117/140 (83.57%), Postives = 131/140 (93.57%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           MRS+NILPDQATFASVLRACAG+SSL+ GQE+HSLI H GFNM EITCS+ IDMYAKCGD
Sbjct: 705 MRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGD 764

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           VK S+QVFHEM  +NSV+SWNSMIVGLAKNGYAEEALEIF QME++SI+PD+VTFLGVLS
Sbjct: 765 VKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLS 824

Query: 121 ACSHAGRVSEGRKIFDLMVS 141
           ACSHAGRVSEGRK+FDLMV+
Sbjct: 825 ACSHAGRVSEGRKVFDLMVN 844

[Close]
BLAST of Spg018112 vs. TAIR 10
Match: AT3G09040.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 186.4 bits (472), Expect = 1.9e-47
Identity = 85/139 (61.15%), Postives = 112/139 (80.58%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           MR + +LPDQATF +VLR C+ LSSL  G+ IHSLI H+  ++ E+T +  IDMYAKCGD
Sbjct: 723 MRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGD 782

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           +K S QVF EM  +++VVSWNS+I G AKNGYAE+AL+IF  M +  I+PD++TFLGVL+
Sbjct: 783 MKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLT 842

Query: 121 ACSHAGRVSEGRKIFDLMV 140
           ACSHAG+VS+GRKIF++M+
Sbjct: 843 ACSHAGKVSDGRKIFEMMI 861

[Close]
BLAST of Spg018112 vs. TAIR 10
Match: AT1G06150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31
Identity = 64/139 (46.04%), Postives = 95/139 (68.35%), Query Frame = 0 

Query: 1    MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
            M  E I+PD+ T ++V+ ACA L  LE G+E+H   L  GF +     SA +DMY+KCG 
Sbjct: 1023 MMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGS 1082

Query: 61   VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
            ++ ++ VF  +  KN +  WNS+I GLA +G+A+EAL++F +ME ES+ P+ VTF+ V +
Sbjct: 1083 LERALLVFFNLPKKN-LFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFT 1142

Query: 121  ACSHAGRVSEGRKIFDLMV 140
            AC+HAG V EGR+I+  M+
Sbjct: 1143 ACTHAGLVDEGRRIYRSMI 1160

[Close]
BLAST of Spg018112 vs. TAIR 10
Match: AT5G50990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-30
Identity = 60/134 (44.78%), Postives = 92/134 (68.66%), Query Frame = 0 

Query: 5   NILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGDVKSS 64
           +I P++ +FAS L ACA L  L + + +HSL++  G  ++ I  SA +D+YAKCGD+ +S
Sbjct: 160 DIKPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTS 219

Query: 65  VQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLSACSH 124
            +VF+ +  +N V  WN+MI G A +G A EA+ +F++ME E + PD +TFLG+L+ CSH
Sbjct: 220 REVFYSV-KRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSH 279

Query: 125 AGRVSEGRKIFDLM 139
            G + EG++ F LM
Sbjct: 280 CGLLEEGKEYFGLM 292

[Close]
BLAST of Spg018112 vs. TAIR 10
Match: AT1G56570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-30
Identity = 60/138 (43.48%), Postives = 90/138 (65.22%), Query Frame = 0 

Query: 3   SENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGDVK 62
           S+  +P+  TF S++ ACA +++L  GQ++H  I   GFN +    +A IDMYAKCG++ 
Sbjct: 306 SQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIP 365

Query: 63  SSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLSAC 122
            S +VF E+  + ++VSW SM++G   +GY  EA+E+F +M    I PD + F+ VLSAC
Sbjct: 366 DSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSAC 425

Query: 123 SHAGRVSEGRKIFDLMVS 141
            HAG V +G K F++M S
Sbjct: 426 RHAGLVEKGLKYFNVMES 443

[Close]
BLAST of Spg018112 vs. TAIR 10
Match: AT1G28690.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-30
Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = 0 

Query: 1   MRSENILPDQATFASVLRACAGLSSLENGQEIHSLILHIGFNMHEITCSAFIDMYAKCGD 60
           M+     P+ +TFASV+ AC+ L+S E GQ++H+ I+  G   H    S+ +DMYAKCG 
Sbjct: 264 MQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGG 323

Query: 61  VKSSVQVFHEMGSKNSVVSWNSMIVGLAKNGYAEEALEIFTQMEKESILPDDVTFLGVLS 120
           +  + +VF +M  KN V SW SMI G  KNG  EEALE+FT+M++  I P+ VTFLG LS
Sbjct: 324 INDARRVFDQMQEKN-VFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALS 383

Query: 121 ACSHAGRVSEGRKIFDLM 139
           ACSH+G V +G +IF+ M
Sbjct: 384 ACSHSGLVDKGYEIFESM 400

The following BLAST results are available for this feature:
BLAST of Spg018112 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6592177.12.5e-6286.43Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG7025038.12.5e-6286.43Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_023534935.12.5e-6286.43pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita ... [more]
XP_022935750.11.2e-6185.71pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita ... [more]
XP_038899907.11.2e-6186.52pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Benincasa ... [more]
BLAST of Spg018112 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SS832.6e-4661.15Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidop... [more]
Q56X052.0e-3046.04Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX... [more]
Q9FI491.7e-2944.78Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana OX... [more]
Q9FXA92.9e-2943.48Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis th... [more]
Q1PFQ95.0e-2949.28Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidop... [more]
BLAST of Spg018112 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IHS26.0e-6286.43pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Cucurbit... [more]
A0A6J1FBI86.0e-6285.71pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Cucurbit... [more]
A0A5A7TIQ61.0e-6183.57Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3D8001.0e-6183.57Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
E5GCI31.0e-6183.57Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo OX=41267... [more]
BLAST of Spg018112 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G09040.11.9e-4761.15Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G06150.11.4e-3146.04basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT5G50990.11.2e-3044.78Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G56570.12.1e-3043.48Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G28690.13.5e-3049.28Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 46..75
e-value: 1.2E-4
score: 22.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 76..123
e-value: 2.7E-12
score: 46.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 78..111
e-value: 4.4E-9
score: 34.0
coord: 46..76
e-value: 3.7E-5
score: 21.6
coord: 113..142
e-value: 8.1E-5
score: 20.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 76..110
score: 12.41921
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..164
e-value: 1.3E-37
score: 131.8
NoneNo IPR availablePANTHERPTHR47926PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 1..140
NoneNo IPR availablePANTHERPTHR47926:SF14PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, MITOCHONDRIALcoord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018112.1Spg018112.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0006508 proteolysis
biological_process GO:0009451 RNA modification
cellular_component GO:0005576 extracellular region
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0000774 adenyl-nucleotide exchange factor activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004185 serine-type carboxypeptidase activity
molecular_function GO:0005515 protein binding