Spg018077 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg018077
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Location	scaffold9: 27354370 .. 27354974 (-)
RNA-Seq Expression	Spg018077
Synteny	Spg018077

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGGAAAGATTGTCAGGCTGCAACATTGTAGTCAGCCTGAATATTGAGTCCAGGGCCAGGCTCCTCAAGAGACAGTACATGGCCATTGTAGAGATGATGGGACTAGCCTACAATGGATTCAGATGGAACGAAGAGCGTAAATGCATCGAGGCTGAGAAGGATATTTTTTATGCATGGGTCGAGGTAAGGGAACTCTCAGCATGTTTAATGCTATACATATGCAATATACTTTAGTAAATGGAATGATCGTTTTACATGTTTGTCGTGCAAGGTCACCCACAAGCTAAGGGCCTACGAAACCGATCATTTCCGTGGTTTAATGAACTAACATTGGTGTTCGAGAAGGACAACAAAAGGGGGGGGAGAGCACTCACTCCACTTGAAAATGCACCAGAACCATGGCTAATCTGGATGACGACATGAACGTGGAGTTCAAAGATTGCTATGTCCCAAGTCCACCTGTTGTTGATCCCACATCGAGGGAGGAGTACTATGCTACACTGACAGGCAGAGTTGTTGGTGCAGGACCATCTCGAACACCCCAGAGGAGATGTTTGTCTATAGGGAACGTGACTGAGGTCTTGGAGGCTGAGTTTTAG

mRNA sequence

ATGATGAAGGAAAGATTGTCAGGCTGCAACATTGTAGTCAGCCTGAATATTGAGTCCAGGGCCAGGCTCCTCAAGAGACAGTACATGGCCATTGTAGAGATGATGGGACTAGCCTACAATGGATTCAGATGGAACGAAGAGCGTAAATGCATCGAGGCTGAGAAGGATATTTTTTATGCATGGGTCGAGTTCAAAGATTGCTATGTCCCAAGTCCACCTGTTGTTGATCCCACATCGAGGGAGGAGTACTATGCTACACTGACAGGCAGAGTTGTTGGTGCAGGACCATCTCGAACACCCCAGAGGAGATGTTTGTCTATAGGGAACGTGACTGAGGTCTTGGAGGCTGAGTTTTAG

Coding sequence (CDS)

ATGATGAAGGAAAGATTGTCAGGCTGCAACATTGTAGTCAGCCTGAATATTGAGTCCAGGGCCAGGCTCCTCAAGAGACAGTACATGGCCATTGTAGAGATGATGGGACTAGCCTACAATGGATTCAGATGGAACGAAGAGCGTAAATGCATCGAGGCTGAGAAGGATATTTTTTATGCATGGGTCGAGTTCAAAGATTGCTATGTCCCAAGTCCACCTGTTGTTGATCCCACATCGAGGGAGGAGTACTATGCTACACTGACAGGCAGAGTTGTTGGTGCAGGACCATCTCGAACACCCCAGAGGAGATGTTTGTCTATAGGGAACGTGACTGAGGTCTTGGAGGCTGAGTTTTAG

Protein sequence

MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVEFKDCYVPSPPVVDPTSREEYYATLTGRVVGAGPSRTPQRRCLSIGNVTEVLEAEF

Homology

[Close]

BLAST of Spg018077 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-17
Identity = 53/129 (41.09%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 1   MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYA 60
           +MKE++ G NI V+ N++SR ++LK+QY+AI EMMG A +GF WNEERKCIEAEK +F  
Sbjct: 51  LMKEKILGSNIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDD 110

Query: 61  WVE-------------FKDCYVPSPPVVDPTSREEYYATLTGRVVGAGPSRTPQRRCLSI 117
           WV+              +D  +P+P  ++P S E+  +T T     AG SR  ++R    
Sbjct: 111 WVKTARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYS 170

[Close]

BLAST of Spg018077 vs. NCBI nr
Match: TYK02222.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-16
Identity = 51/127 (40.16%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 1   MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYA 60
           +MKE++   NI V+LN+ESR  +LK+QY  I EMMG A NGF  NE+RKCIEAEK +F  
Sbjct: 212 LMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDD 271

Query: 61  W-----------VEFKDCYVPSPPVVDPTSREEYYATLTGRVVGAGPSRTPQRRCLSIGN 117
           W           +  +D  +P+P  ++P S E+  +T T     AG SR  ++R   +G+
Sbjct: 272 WTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSCLGD 331

[Close]

BLAST of Spg018077 vs. NCBI nr
Match: KAA0060652.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-16
Identity = 51/127 (40.16%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 1   MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYA 60
           +MKE++   NI V+LN+ESR  +LK+QY  I EMMG A NGF  NE+RKCIEAEK +F  
Sbjct: 213 LMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDD 272

Query: 61  W-----------VEFKDCYVPSPPVVDPTSREEYYATLTGRVVGAGPSRTPQRRCLSIGN 117
           W           +  +D  +P+P  ++P S E+  +T T     AG SR  ++R   +G+
Sbjct: 273 WTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSCLGD 332

[Close]

BLAST of Spg018077 vs. NCBI nr
Match: TYK05757.1 (60S ribosomal protein L35 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-13
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 2  MKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAW 61
          MKE++ G NI V+ N+ESR ++LK+QY  I EM+G A +GF WNEERKCIEAEK +FY W
Sbjct: 1  MKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDW 60

Query: 62 VE 64
          V+
Sbjct: 61 VK 62

[Close]

BLAST of Spg018077 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1   MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYA 60
           +MKE++   NI V+LN+ESR + LK+QY AI +MMG A + F WNEERKCIEAEK +F  
Sbjct: 52  LMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDD 111

Query: 61  WVE 64
           WV+
Sbjct: 112 WVK 114

[Close]

BLAST of Spg018077 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 53/129 (41.09%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 1   MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYA 60
           +MKE++ G NI V+ N++SR ++LK+QY+AI EMMG A +GF WNEERKCIEAEK +F  
Sbjct: 51  LMKEKILGSNIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDD 110

Query: 61  WVE-------------FKDCYVPSPPVVDPTSREEYYATLTGRVVGAGPSRTPQRRCLSI 117
           WV+              +D  +P+P  ++P S E+  +T T     AG SR  ++R    
Sbjct: 111 WVKTARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYS 170

[Close]

BLAST of Spg018077 vs. ExPASy TrEMBL
Match: A0A5A7UXQ6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005420 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 51/127 (40.16%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 1   MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYA 60
           +MKE++   NI V+LN+ESR  +LK+QY  I EMMG A NGF  NE+RKCIEAEK +F  
Sbjct: 213 LMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDD 272

Query: 61  W-----------VEFKDCYVPSPPVVDPTSREEYYATLTGRVVGAGPSRTPQRRCLSIGN 117
           W           +  +D  +P+P  ++P S E+  +T T     AG SR  ++R   +G+
Sbjct: 273 WTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSCLGD 332

[Close]

BLAST of Spg018077 vs. ExPASy TrEMBL
Match: A0A5D3BTU3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00110 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 51/127 (40.16%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 1   MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYA 60
           +MKE++   NI V+LN+ESR  +LK+QY  I EMMG A NGF  NE+RKCIEAEK +F  
Sbjct: 212 LMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDD 271

Query: 61  W-----------VEFKDCYVPSPPVVDPTSREEYYATLTGRVVGAGPSRTPQRRCLSIGN 117
           W           +  +D  +P+P  ++P S E+  +T T     AG SR  ++R   +G+
Sbjct: 272 WTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSCLGD 331

[Close]

BLAST of Spg018077 vs. ExPASy TrEMBL
Match: A0A5D3C1Q9 (60S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002460 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 2  MKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAW 61
          MKE++ G NI V+ N+ESR ++LK+QY  I EM+G A +GF WNEERKCIEAEK +FY W
Sbjct: 1  MKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDW 60

Query: 62 VE 64
          V+
Sbjct: 61 VK 62

[Close]

BLAST of Spg018077 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.8e-12
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1   MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYA 60
           +MKE++   NI V+LN+ESR + LK+QY AI +MMG A + F WNEERKCIEAEK +F  
Sbjct: 52  LMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDD 111

Query: 61  WVE 64
           WV+
Sbjct: 112 WVK 114

The following BLAST results are available for this feature:

BLAST of Spg018077 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050106.1	2.2e-17	41.09	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02222.1	7.2e-16	40.16	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0060652.1	7.2e-16	40.16	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
TYK05757.1	2.6e-13	61.29	60S ribosomal protein L35 [Cucumis melo var. makuwa]	[more]
TYJ96933.1	1.4e-11	58.73	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg018077 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg018077 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U7F7	1.1e-17	41.09	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UXQ6	3.5e-16	40.16	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3BTU3	3.5e-16	40.16	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3C1Q9	1.2e-13	61.29	60S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3BC95	6.8e-12	58.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg018077 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg018077.1	Spg018077.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome