Spg017989 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017989
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	scaffold9: 29874696 .. 29875978 (-)
RNA-Seq Expression	Spg017989
Synteny	Spg017989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCACGCAGAACATCCCTTTTCAGGCTAAACACCCCATCACATGGCCCAAAGCCTATATGTAAACTGGAGTGGTCCCGAGGACCTCTTGCTCTTTATATACTGTGGAAACACATTCACATAGCACATGGATAATCACCAAAGGGTACATGGATCTAGTGTTTTGAAAACTACTTCCTAGCATAAAACTTTCTTTCTTTTTTTTTTTTTTTTGAAAATAAGCATAAAACTCTTTATTCACAAACTTATCTAAAAGGGAAAAATACACTTTTAGTCCCCGAGGTTTGGGTTAGGTTTCATTTTGGTCCCTGAGGTTTCAAACTCAACAATTTAGTCCCTGAGGTTTGGGTTTAGTTTCAATTTAGTCCCCCCATCCATTTTTCCGTTAATAGTTAACGGGATGCTGACATGACACTAATTTTTTATTAAAAACATTACTTTTTATTTTTTATTTTAATTAAAAATATATTAAAATAATAAAAATATAATTATTTTTAATTATTTTTATTTGTTTTTATTCCTACCCTCTTCTTTCTTCTTCTTCCTCCTCCCTCTTCTTCTACATCTTCTCCAAACCTGCTGTCATGGCCGGCGACCACCGCTCGTCGGCGGCCGCCACCGCCGGAGACTTTTTTTTTTCTCTTTTCTCCTCCTCTTTTCCCTTCTTCTCTAACTTTGGAAGAGGCATTTCCTCAAACAGTTGATAAGCAATTACTTGTTCCATTTGCATAGACTTCCAGGCGACTACGGCTTCGACCCATTGGGGTTGGGGAAGGACCCAACATTTCTAAAGTGGTACAGAGAGGCAGAGCTAATCCATGGGTGGTGGGCAATGGCAGTAGTGGTCAGAATCTTCGTAGGGCAAGCCTGGAGTGGAATCCCATGGTTCGAAGCCAGAGCCGATCCGGGCGCAGTCGCCCCATTCTCCTTCGGAACACTGCTTGGAACCCAGCTTCTGCTAATGGGATGGGTGGAGAGCAAGCAGTGGGTGGATTTCTTCAACCCAGAGTCGCAGTTCGTCGAATGGGCGATGCCATGGTCGAGGACGGCAGAGAACTTCGCAAACGCGACAGGAGAACAGGGGTATCCCAGAGGAAAATTCTTCGATCCGTTGGGATTTGCAGGAAGTATTAAGGATAGGCTTTACATTGCGAACTCGGAGAAGTTGGAGAGATTGAAGTTGGCGAAGATCAAGCATGCAAGGATCTTCATGTTAGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCGTTGGGTGCCCTTGGATTGTAA

mRNA sequence

ATGTGCACGCAGAACATCCCTTTTCAGGCTAAACACCCCATCACATGGCCCAAAGCCTATATACTTCCAGGCGACTACGGCTTCGACCCATTGGGGTTGGGGAAGGACCCAACATTTCTAAAGTGGTACAGAGAGGCAGAGCTAATCCATGGGTGGTGGGCAATGGCAGTAGTGGTCAGAATCTTCGTAGGGCAAGCCTGGAGTGGAATCCCATGGTTCGAAGCCAGAGCCGATCCGGGCGCAGTCGCCCCATTCTCCTTCGGAACACTGCTTGGAACCCAGCTTCTGCTAATGGGATGGGTGGAGAGCAAGCAGTGGGTGGATTTCTTCAACCCAGAGTCGCAGTTCGTCGAATGGGCGATGCCATGGTCGAGGACGGCAGAGAACTTCGCAAACGCGACAGGAGAACAGGGGTATCCCAGAGGAAAATTCTTCGATCCGTTGGGATTTGCAGGAAGTATTAAGGATAGGCTTTACATTGCGAACTCGGAGAAGTTGGAGAGATTGAAGTTGGCGAAGATCAAGCATGCAAGGATCTTCATGTTAGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCGTTGGGTGCCCTTGGATTGTAA

Coding sequence (CDS)

ATGTGCACGCAGAACATCCCTTTTCAGGCTAAACACCCCATCACATGGCCCAAAGCCTATATACTTCCAGGCGACTACGGCTTCGACCCATTGGGGTTGGGGAAGGACCCAACATTTCTAAAGTGGTACAGAGAGGCAGAGCTAATCCATGGGTGGTGGGCAATGGCAGTAGTGGTCAGAATCTTCGTAGGGCAAGCCTGGAGTGGAATCCCATGGTTCGAAGCCAGAGCCGATCCGGGCGCAGTCGCCCCATTCTCCTTCGGAACACTGCTTGGAACCCAGCTTCTGCTAATGGGATGGGTGGAGAGCAAGCAGTGGGTGGATTTCTTCAACCCAGAGTCGCAGTTCGTCGAATGGGCGATGCCATGGTCGAGGACGGCAGAGAACTTCGCAAACGCGACAGGAGAACAGGGGTATCCCAGAGGAAAATTCTTCGATCCGTTGGGATTTGCAGGAAGTATTAAGGATAGGCTTTACATTGCGAACTCGGAGAAGTTGGAGAGATTGAAGTTGGCGAAGATCAAGCATGCAAGGATCTTCATGTTAGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCGTTGGGTGCCCTTGGATTGTAA

Protein sequence

MCTQNIPFQAKHPITWPKAYILPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGAVAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPRGKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGALGL

Homology

[Close]

BLAST of Spg017989 vs. NCBI nr
Match: XP_004140973.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis sativus] >KGN46151.1 hypothetical protein Csa_005752 [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 8.1e-92
Identity = 163/182 (89.56%), Postives = 172/182 (94.51%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGDYGFDPLGLGKDP FLKWYREAELIHG WAMA VV IFVGQAWSGIPWFEA ADPGA
Sbjct: 74  LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGA 133

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           +APFSFG+LLGTQLLLMGWVESK+WVDFFNPESQ VEWA PWSRTAENFANATGEQGYP 
Sbjct: 134 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 193

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPLGFAG++KD +YIA++EKLERLKLA+IKHARI MLAMLIFYFEAGQGKTPLGAL
Sbjct: 194 GKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGAL 253

Query: 202 GL 204
           GL
Sbjct: 254 GL 255

[Close]

BLAST of Spg017989 vs. NCBI nr
Match: XP_008441527.1 (PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis melo] >KAA0054917.1 chlorophyll a-b binding protein CP24 10A [Cucumis melo var. makuwa] >TYK22706.1 chlorophyll a-b binding protein CP24 10A [Cucumis melo var. makuwa])

HSP 1 Score: 345.5 bits (885), Expect = 3.1e-91
Identity = 162/182 (89.01%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGDYGFDPLGLGKDP FLKWYREAELIHG WAMA VV IFVGQAWSGIPWFEA ADPGA
Sbjct: 74  LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGA 133

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           +APFSFG+LLGTQLLLMGWVESK+WVDFFNPESQ VEWA PWSRTAENFANATGEQGYP 
Sbjct: 134 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 193

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPLGFAG++KD +YI ++EKLERLKLA+IKHARI MLAMLIFYFEAGQGKTPLGAL
Sbjct: 194 GKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGAL 253

Query: 202 GL 204
           GL
Sbjct: 254 GL 255

[Close]

BLAST of Spg017989 vs. NCBI nr
Match: XP_011092414.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Sesamum indicum])

HSP 1 Score: 344.0 bits (881), Expect = 9.0e-91
Identity = 162/182 (89.01%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGDYGFDPLGLGKDP FLKWYREAELIHG WAMA VV IFVGQAWSGIPWFEA A PGA
Sbjct: 72  LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAAPGA 131

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           VAPFSFGTLLGTQLLLMGWVESK+WVDFFNPESQ VEWA PWSRTAENFANATG+QGYP 
Sbjct: 132 VAPFSFGTLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGDQGYPG 191

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPLGFAG++KD +YIA+++KLERLKLA+IKHARI MLAMLIFYFEAGQGKTPLGAL
Sbjct: 192 GKFFDPLGFAGTLKDGVYIADADKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGAL 251

Query: 202 GL 204
           GL
Sbjct: 252 GL 253

[Close]

BLAST of Spg017989 vs. NCBI nr
Match: XP_038885126.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic [Benincasa hispida])

HSP 1 Score: 344.0 bits (881), Expect = 9.0e-91
Identity = 161/182 (88.46%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGDYGFDPLGLGKDP FLKWYREAELIHG WAMA VV IF+GQAWSGIPWFEA ADPGA
Sbjct: 74  LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGIPWFEAGADPGA 133

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           +APFSFG+LLGTQLLLMGWVESK+WVDFFNPESQ VEWA PWSRTAENFANATGEQGYP 
Sbjct: 134 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 193

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPLGFAG+IKD +YI ++EKLERLKLA+IKHARI MLAML FYFEAGQGKTPLGAL
Sbjct: 194 GKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLTFYFEAGQGKTPLGAL 253

Query: 202 GL 204
           GL
Sbjct: 254 GL 255

[Close]

BLAST of Spg017989 vs. NCBI nr
Match: XP_022993917.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 343.6 bits (880), Expect = 1.2e-90
Identity = 161/182 (88.46%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGD+GFDPLGLGKDP FLKWYREAELIHG WAMA VV IFVGQAWSGIPWFEA ADPGA
Sbjct: 74  LPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGA 133

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           +APFSFG+LLGTQLLLMGWVESK+WVDFFNPESQ VEWA PWSRTAENFANATGEQGYP 
Sbjct: 134 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 193

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPLGFAG+IKD +YI ++EKLERLKLA+IKHARI MLAMLIFYFEAGQGKTPLGAL
Sbjct: 194 GKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGAL 253

Query: 202 GL 204
           G+
Sbjct: 254 GV 255

[Close]

BLAST of Spg017989 vs. ExPASy Swiss-Prot
Match: P27524 (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10A PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 8.7e-89
Identity = 150/182 (82.42%), Postives = 167/182 (91.76%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGDYGFDPLGLGKDP FLKWYREAELIHG WAMA V+ IFVGQAWSGIPWFEA ADPGA
Sbjct: 75  LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGA 134

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           +APFSFGTLLGTQL+LMGWVESK+WVDFF+P+SQ VEWA PWS+TAENFAN TGEQGYP 
Sbjct: 135 IAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPG 194

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPL  AG++ + +Y+ ++EKLERLK+A+IKHAR+ MLAMLIFYFEAGQGKTPLGAL
Sbjct: 195 GKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAGQGKTPLGAL 254

Query: 202 GL 204
           GL
Sbjct: 255 GL 256

[Close]

BLAST of Spg017989 vs. ExPASy Swiss-Prot
Match: P36494 (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562 PE=2 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.3e-87
Identity = 150/182 (82.42%), Postives = 166/182 (91.21%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGD+GFDPLGLGKDP FLKWYREAELIHG WAM  V+ IFVGQAW+GIPWFEA ADPGA
Sbjct: 80  LPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGA 139

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           VAPFSFGTLLGTQLLLMGWVESK+WVDFF+P+SQ VEWA PWSRTAENF+N+TGEQGYP 
Sbjct: 140 VAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPG 199

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPL  AG+I + +Y  +++KLERLKLA+IKHAR+ MLAMLIFYFEAGQGKTPLGAL
Sbjct: 200 GKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGAL 259

Query: 202 GL 204
           GL
Sbjct: 260 GL 261

[Close]

BLAST of Spg017989 vs. ExPASy Swiss-Prot
Match: P27525 (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10B PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.4e-86
Identity = 146/182 (80.22%), Postives = 166/182 (91.21%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGD+GFDPLGLGKDP FLKWYREAELIHG WAMA V+ IFVGQAWSGIPWFEA ADPGA
Sbjct: 75  LPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGA 134

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           +APFSFG+LLGTQLLLMGWVESK+WVDFF+ +SQ ++WA PWS+TAENFAN TGEQGYP 
Sbjct: 135 IAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPG 194

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPL  AG++ + +Y+ ++EKLERLKLA+IKH+R+ MLAMLIFYFEAGQGKTPLGAL
Sbjct: 195 GKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAGQGKTPLGAL 254

Query: 202 GL 204
           GL
Sbjct: 255 GL 256

[Close]

BLAST of Spg017989 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21
Identity = 64/173 (36.99%), Postives = 91/173 (52.60%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFE--ARADP 81
           LPGD+GFDPLGLG DP  LKW+ +AELIH  WAM  V  I + +    + + E  +  D 
Sbjct: 82  LPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDA 141

Query: 82  GAVAPFSFG-TLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQG 141
           G+   F+   TL   Q++LMGW E ++W D   P S  +E   P      +  N   + G
Sbjct: 142 GSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYP------HKVNPKPDVG 201

Query: 142 YPRGKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEA 192
           YP G +FD + +           + E +  L+  +IK+ R+ MLA L F F+A
Sbjct: 202 YPGGLWFDFMMWGR--------GSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 240

[Close]

BLAST of Spg017989 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-21
Identity = 79/202 (39.11%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 7   PFQAKHPITW-----PKAYI---LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVV 66
           P  A    TW     P  Y+   L GDYGFDPLGLG+DP  LKWY +AEL+H  +AM  V
Sbjct: 40  PTVAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGV 99

Query: 67  VRIFVGQ--AWSGI----PWFEARADPGAVAPFSFG---TLLGTQLLLMGWVESKQWVDF 126
             I        +GI     W+EA    GAV  F F    TL+  Q LLMG+ E+K+++DF
Sbjct: 100 AGILFTDLLRTTGIRNLPVWYEA----GAV-KFDFASTKTLIVVQFLLMGFAETKRYMDF 159

Query: 127 FNPESQFVEWAMPWSRTAENFANATGEQGYPRGKFFDPLGFAGSIKDRLYIANSEKLERL 186
            +P SQ  E +  +   A   A    E GYP G   +PLG A  +         +     
Sbjct: 160 VSPGSQAKEGSFFFGLEA---ALEGLEPGYPGGPLLNPLGLAKDV---------QNAHDW 219

Query: 187 KLAKIKHARIFMLAMLIFYFEA 192
           KL +IK+ R+ M+AML F+ +A
Sbjct: 220 KLKEIKNGRLAMMAMLGFFVQA 224

[Close]

BLAST of Spg017989 vs. ExPASy TrEMBL
Match: A0A0A0KEF5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G057170 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.9e-92
Identity = 163/182 (89.56%), Postives = 172/182 (94.51%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGDYGFDPLGLGKDP FLKWYREAELIHG WAMA VV IFVGQAWSGIPWFEA ADPGA
Sbjct: 74  LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGA 133

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           +APFSFG+LLGTQLLLMGWVESK+WVDFFNPESQ VEWA PWSRTAENFANATGEQGYP 
Sbjct: 134 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 193

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPLGFAG++KD +YIA++EKLERLKLA+IKHARI MLAMLIFYFEAGQGKTPLGAL
Sbjct: 194 GKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGAL 253

Query: 202 GL 204
           GL
Sbjct: 254 GL 255

[Close]

BLAST of Spg017989 vs. ExPASy TrEMBL
Match: A0A5D3DGI0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00250 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.5e-91
Identity = 162/182 (89.01%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGDYGFDPLGLGKDP FLKWYREAELIHG WAMA VV IFVGQAWSGIPWFEA ADPGA
Sbjct: 74  LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGA 133

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           +APFSFG+LLGTQLLLMGWVESK+WVDFFNPESQ VEWA PWSRTAENFANATGEQGYP 
Sbjct: 134 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 193

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPLGFAG++KD +YI ++EKLERLKLA+IKHARI MLAMLIFYFEAGQGKTPLGAL
Sbjct: 194 GKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGAL 253

Query: 202 GL 204
           GL
Sbjct: 254 GL 255

[Close]

BLAST of Spg017989 vs. ExPASy TrEMBL
Match: A0A1S3B4E4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485628 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.5e-91
Identity = 162/182 (89.01%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGDYGFDPLGLGKDP FLKWYREAELIHG WAMA VV IFVGQAWSGIPWFEA ADPGA
Sbjct: 74  LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGA 133

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           +APFSFG+LLGTQLLLMGWVESK+WVDFFNPESQ VEWA PWSRTAENFANATGEQGYP 
Sbjct: 134 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 193

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPLGFAG++KD +YI ++EKLERLKLA+IKHARI MLAMLIFYFEAGQGKTPLGAL
Sbjct: 194 GKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGAL 253

Query: 202 GL 204
           GL
Sbjct: 254 GL 255

[Close]

BLAST of Spg017989 vs. ExPASy TrEMBL
Match: A0A6I9U5W8 (Chlorophyll a-b binding protein, chloroplastic OS=Sesamum indicum OX=4182 GN=LOC105172598 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.4e-91
Identity = 162/182 (89.01%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGDYGFDPLGLGKDP FLKWYREAELIHG WAMA VV IFVGQAWSGIPWFEA A PGA
Sbjct: 72  LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAAPGA 131

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           VAPFSFGTLLGTQLLLMGWVESK+WVDFFNPESQ VEWA PWSRTAENFANATG+QGYP 
Sbjct: 132 VAPFSFGTLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGDQGYPG 191

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPLGFAG++KD +YIA+++KLERLKLA+IKHARI MLAMLIFYFEAGQGKTPLGAL
Sbjct: 192 GKFFDPLGFAGTLKDGVYIADADKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGAL 251

Query: 202 GL 204
           GL
Sbjct: 252 GL 253

[Close]

BLAST of Spg017989 vs. ExPASy TrEMBL
Match: A0A6J1JU87 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489772 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 5.7e-91
Identity = 161/182 (88.46%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGD+GFDPLGLGKDP FLKWYREAELIHG WAMA VV IFVGQAWSGIPWFEA ADPGA
Sbjct: 74  LPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGA 133

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           +APFSFG+LLGTQLLLMGWVESK+WVDFFNPESQ VEWA PWSRTAENFANATGEQGYP 
Sbjct: 134 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 193

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           GKFFDPLGFAG+IKD +YI ++EKLERLKLA+IKHARI MLAMLIFYFEAGQGKTPLGAL
Sbjct: 194 GKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGAL 253

Query: 202 GL 204
           G+
Sbjct: 254 GV 255

[Close]

BLAST of Spg017989 vs. TAIR 10
Match: AT1G15820.1 (light harvesting complex photosystem II subunit 6 )

HSP 1 Score: 314.7 bits (805), Expect = 5.4e-86
Identity = 145/182 (79.67%), Postives = 162/182 (89.01%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGA 81
           LPGD+GFDPLGLGKDP FLKWYREAELIHG WAMA V+ IFVGQAWSG+ WFEA A P A
Sbjct: 77  LPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDA 136

Query: 82  VAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPR 141
           +APFSFG+LLGTQLLLMGWVESK+WVDFFNP+SQ VEWA PWS+TAENFAN TG+QGYP 
Sbjct: 137 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPG 196

Query: 142 GKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGAL 201
           G+FFDPLG AG  +D +Y  + EKLERLKLA+IKH+R+ M+AMLIFYFEAGQGKTPLGAL
Sbjct: 197 GRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEAGQGKTPLGAL 256

Query: 202 GL 204
           GL
Sbjct: 257 GL 258

[Close]

BLAST of Spg017989 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-22
Identity = 64/173 (36.99%), Postives = 91/173 (52.60%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFE--ARADP 81
           LPGD+GFDPLGLG DP  LKW+ +AELIH  WAM  V  I + +    + + E  +  D 
Sbjct: 82  LPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDA 141

Query: 82  GAVAPFSFG-TLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQG 141
           G+   F+   TL   Q++LMGW E ++W D   P S  +E   P      +  N   + G
Sbjct: 142 GSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYP------HKVNPKPDVG 201

Query: 142 YPRGKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEA 192
           YP G +FD + +           + E +  L+  +IK+ R+ MLA L F F+A
Sbjct: 202 YPGGLWFDFMMWGR--------GSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 240

[Close]

BLAST of Spg017989 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-22
Identity = 79/202 (39.11%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 7   PFQAKHPITW-----PKAYI---LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVV 66
           P  A    TW     P  Y+   L GDYGFDPLGLG+DP  LKWY +AEL+H  +AM  V
Sbjct: 40  PTVAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGV 99

Query: 67  VRIFVGQ--AWSGI----PWFEARADPGAVAPFSFG---TLLGTQLLLMGWVESKQWVDF 126
             I        +GI     W+EA    GAV  F F    TL+  Q LLMG+ E+K+++DF
Sbjct: 100 AGILFTDLLRTTGIRNLPVWYEA----GAV-KFDFASTKTLIVVQFLLMGFAETKRYMDF 159

Query: 127 FNPESQFVEWAMPWSRTAENFANATGEQGYPRGKFFDPLGFAGSIKDRLYIANSEKLERL 186
            +P SQ  E +  +   A   A    E GYP G   +PLG A  +         +     
Sbjct: 160 VSPGSQAKEGSFFFGLEA---ALEGLEPGYPGGPLLNPLGLAKDV---------QNAHDW 219

Query: 187 KLAKIKHARIFMLAMLIFYFEA 192
           KL +IK+ R+ M+AML F+ +A
Sbjct: 220 KLKEIKNGRLAMMAMLGFFVQA 224

[Close]

BLAST of Spg017989 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-22
Identity = 79/202 (39.11%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 7   PFQAKHPITW-----PKAYI---LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVV 66
           P  A    TW     P  Y+   L GDYGFDPLGLG+DP  LKWY +AEL+H  +AM  V
Sbjct: 40  PTVAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGV 99

Query: 67  VRIFVGQ--AWSGI----PWFEARADPGAVAPFSFG---TLLGTQLLLMGWVESKQWVDF 126
             I        +GI     W+EA    GAV  F F    TL+  Q LLMG+ E+K+++DF
Sbjct: 100 AGILFTDLLRTTGIRNLPVWYEA----GAV-KFDFASTKTLIVVQFLLMGFAETKRYMDF 159

Query: 127 FNPESQFVEWAMPWSRTAENFANATGEQGYPRGKFFDPLGFAGSIKDRLYIANSEKLERL 186
            +P SQ  E +  +   A   A    E GYP G   +PLG A  +         +     
Sbjct: 160 VSPGSQAKEGSFFFGLEA---ALEGLEPGYPGGPLLNPLGLAKDV---------QNAHDW 219

Query: 187 KLAKIKHARIFMLAMLIFYFEA 192
           KL +IK+ R+ M+AML F+ +A
Sbjct: 220 KLKEIKNGRLAMMAMLGFFVQA 224

[Close]

BLAST of Spg017989 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-20
Identity = 62/176 (35.23%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 22  LPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGI------PWFEA 81
           LPGD+GFDPLGL  DP  LKW  +AE++H  WAM     IF+ +  + I       W+ A
Sbjct: 69  LPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA 128

Query: 82  RADPGAVAPFS-FGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANAT 141
               G    F+   TL   +L+L+GW E ++W D   P S   +   P      N    T
Sbjct: 129 ----GEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFP-----NNKLTGT 188

Query: 142 GEQGYPRGKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFE 191
            + GYP G +FDPLG+           +  KL+ L+  +IK+ R+ MLA++  +F+
Sbjct: 189 -DVGYPGGLWFDPLGWGS--------GSPAKLKELRTKEIKNGRLAMLAVMGAWFQ 226

The following BLAST results are available for this feature:

BLAST of Spg017989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140973.1	8.1e-92	89.56	chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis sativus] >KGN46...	[more]
XP_008441527.1	3.1e-91	89.01	PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis melo...	[more]
XP_011092414.1	9.0e-91	89.01	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Sesamum indicum]	[more]
XP_038885126.1	9.0e-91	88.46	chlorophyll a-b binding protein CP24 10A, chloroplastic [Benincasa hispida]	[more]
XP_022993917.1	1.2e-90	88.46	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Spg017989 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27524	8.7e-89	82.42	Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum ...	[more]
P36494	1.3e-87	82.42	Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562...	[more]
P27525	1.4e-86	80.22	Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum ...	[more]
Q8LCQ4	1.6e-21	36.99	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
Q9C639	2.1e-21	39.11	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]

BLAST of Spg017989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEF5	3.9e-92	89.56	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5D3DGI0	1.5e-91	89.01	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3B4E4	1.5e-91	89.01	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6I9U5W8	4.4e-91	89.01	Chlorophyll a-b binding protein, chloroplastic OS=Sesamum indicum OX=4182 GN=LOC...	[more]
A0A6J1JU87	5.7e-91	88.46	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Spg017989 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15820.1	5.4e-86	79.67	light harvesting complex photosystem II subunit 6	[more]
AT1G19150.1	1.1e-22	36.99	photosystem I light harvesting complex gene 6	[more]
AT1G45474.1	1.5e-22	39.11	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	1.5e-22	39.11	photosystem I light harvesting complex gene 5	[more]
AT3G61470.1	1.8e-20	35.23	photosystem I light harvesting complex gene 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 20..202 e-value: 1.0E-38 score: 135.1
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 22..191 e-value: 1.2E-32 score: 113.6
None	No IPR available	PANTHER	PTHR21649:SF107	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 21..203
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 22..203
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 21..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017989.1	Spg017989.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding