Spg017981 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017981
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	gigantea protein (GI)
Location	scaffold9: 27624887 .. 27625679 (+)
RNA-Seq Expression	Spg017981
Synteny	Spg017981

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGAGAGAAGTCCCTCAATCGTTTTCTGGACTCCCATGTTTTATGGCTTTTCTTAGTGTAAGTTGTCTCTCTATTCAACAATTATAGTATTGATTCTCTTACGAAGTTGGAAGAGCTTTTCGAAACCCCCTTTTGCGTGGTGCTTCACTTTCCTTTAATTTTATGTCTTCTATGGAATTGTTTCGTATTAGAAAAAGAAATCCTGAGAAACATTTTTACACATTAAACAGGTGCAGTGGAGTTATGGGTAAATATGCTGCTGGAGAACTCAGGCCACCCACATCAGGTTGGTGAACATTTTACTTAAATGTCGAACTTTGAAGTGGCATTTCACTTGATGTAACGGATTTGCAACTTATCTATGTTTGGAAAATAATGAAATGAGTGTTAAAAATTGTTCGGTATAAACAAGCTGAAGATAATTATGCTAAAATTAAATATAAATCATTATTGTAGTAAATTACAGAATCATGATACCAAAAAAAAAACGGGCAAAAGTCAACTTATGCCCCTAAATTTTGGGTTGTATCAATGAAAACCCTAAACTAATAATTGTGTCAAATAAAACTCTGAACTTGCATGAAGAGGTGCTGGCAGTTGAGGAAGATCAATTAGAATTAAATGACCAAGGGACCACCTCTTTTAATGAGCAGTCAGCAGAATTTCAAGGCATTAATTTCTCTAAGAGAAGGAAGTCTAGTGGAAGATACCTTTGGTCTAAGTCTAGAGTTGGGAGTAAAGGTGGAGAGACGGGGAAGCTCTCGAATTCTTCCCTTGGTTGTAAATGA

mRNA sequence

ATGACTAGAGAGAAGTCCCTCAATCGTTTTCTGGACTCCCATGTTTTATGGCTTTTCTTAGTGTGCAGTGGAGTTATGGGTAAATATGCTGCTGGAGAACTCAGGCCACCCACATCAGTTGAGGAAGATCAATTAGAATTAAATGACCAAGGGACCACCTCTTTTAATGAGCAGTCAGCAGAATTTCAAGGCATTAATTTCTCTAAGAGAAGGAAGTCTAGTGGAAGATACCTTTGGTCTAAGTCTAGAGTTGGGAGTAAAGGTGGAGAGACGGGGAAGCTCTCGAATTCTTCCCTTGGTTGTAAATGA

Coding sequence (CDS)

ATGACTAGAGAGAAGTCCCTCAATCGTTTTCTGGACTCCCATGTTTTATGGCTTTTCTTAGTGTGCAGTGGAGTTATGGGTAAATATGCTGCTGGAGAACTCAGGCCACCCACATCAGTTGAGGAAGATCAATTAGAATTAAATGACCAAGGGACCACCTCTTTTAATGAGCAGTCAGCAGAATTTCAAGGCATTAATTTCTCTAAGAGAAGGAAGTCTAGTGGAAGATACCTTTGGTCTAAGTCTAGAGTTGGGAGTAAAGGTGGAGAGACGGGGAAGCTCTCGAATTCTTCCCTTGGTTGTAAATGA

Protein sequence

MTREKSLNRFLDSHVLWLFLVCSGVMGKYAAGELRPPTSVEEDQLELNDQGTTSFNEQSAEFQGINFSKRRKSSGRYLWSKSRVGSKGGETGKLSNSSLGCK

Homology

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BLAST of Spg017981 vs. TAIR 10
Match: AT1G22770.1 (gigantea protein (GI) )

HSP 1 Score: 40.8 bits (94), Expect = 7.6e-04
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 0


Query: 19  FLVCSGVMGKYAAGELRPPT 39
           F  CSGVMGKYAAGEL+PPT
Sbjct: 210 FRWCSGVMGKYAAGELKPPT 229

The following BLAST results are available for this feature:

BLAST of Spg017981 vs.


Match Name	E-value	Identity	Description

BLAST of Spg017981 vs.


Match Name	E-value	Identity	Description

BLAST of Spg017981 vs.


Match Name	E-value	Identity	Description

BLAST of Spg017981 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22770.1	7.6e-04	85.00	gigantea protein (GI)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017981.1	Spg017981.1	mRNA