Spg017921 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017921
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	30S ribosomal protein S10
Location	scaffold9: 35404714 .. 35407949 (-)
RNA-Seq Expression	Spg017921
Synteny	Spg017921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGGAACTGCGAGCCAAAAGCTTCCATTCTTTCAGAGCTTCCGCCATTGATATTCACAGGAACTTCCATGGCTATTTCTTCACTCTCTGCTACTATAATTCCATCTCCTACATTGTTTGGTCCCTTGTCATCCCATTCTTCTAAACCTAGACTTCTTCCCTTCTCTGGTTCCTCTTCTACCGTTTCAAAGCTCAAACCCCTCCAATTTTCGTTGCCGTCGACTAGGGTTTATGCTGCTCCTGAAGTTCTCGACTCCCCCGACACCATCGAACCGCCTCCGGAAATCCTGGAGGGTTCTGGAGCTGCCGCTCTCGAGGTTTGTGATAGTGTTTTCGGCTTGAAATGTAGTTCGGAATGGAGCCAAATGTTACAATTTCTCTATGTTTTGTGATGGGTGTAAGAATTTTTGTTCTACTGTGGTCTTTATGGTTCTGGGTTTTATTTCCTTTTCTTTTGGGAATTGTGGCTTGGGATGTGAGTGACTGGTTTTCTAAATTTCCATTGTGTCTTCAATTGCATTGCAAGTAATAACTAAGGAATTTATTTACTTATTTCTTTAAGATCATGATCATAGATGAGATATTTTCCTATTTTTGTTTAACGTTGTGTTCATGTTTAGGGTGAAGATTTTGAGGCGCCTGGGACTTCAGCGCTTAGCATTGGTGAGGATGTGGATAAGGTAATTTTTAATGTTTTGCGGATAATGTTTTACTCCAGCATCCCGTAGCTTGCTTAAGATATAAGATGTTCTGCAGAGCAACTTCTAAAACCAAAACTCTGAAATATATATTGGTTCTGATGAGTAGAGAAAGAGTGGCCATAAAATATACAATGAAATCATTTAATGAGATTATATAAGTATCATGGTTGATGATCCTGCTAAGTTGACTGGGTAAGGTCACGAGTGAATAGAAAATCGAAAGTGTATGTATCAGTTGTAGCAACCTTCAAGGCTAAATAAGGAGATGGATTTCACGCAACATTGGAAATTGCTAATGTAGTGGGACTGTGTGGAAGGTTACAGCCTTACAGATTCCTTTTTATCCTAAAGGAACCTCCTCAATTAAGTAGTGCAGTTCTCTAATGGCTCCACTAGCTTCATTTATGTGAGTTATTTGTCAGGATATCGGGATATTCATTTTGTACCTTTTTCTGTTTACAAAATGCCAATATGGTTTTCATCGGATCATCATTTTGTGTTATTTGATTTGTTTGATTATCTGTGCCAAGAGGTGTCGGTGTGCTTAGGGACTTATCTTAGCCAGTTGGTTTTGTAATTGCCAGTGTTTTTCCTATGTTTGGCTGATTTTAACGAACTAAAAATGTTTGTGGTTTCAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGAAACACAAATGCAAAAACCATGGGTCCTGTGCCATTACCAACGAAAAAACGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAGCGCCTGATCGATATTTTGTACCCTACTGCCCAAACTATCGATTCTTTGATGCAACTAGACCTTCCAGCTGGTGTTGATGTGGAGGTCAAGCTATGAACAGAACAGCTTCACATAGGTATAGTTTCCATAAGTCTATTATATTGCCAGTATTCCTTTTTACTGTTACATTGCCCTTCATGATGACATGTTATATTGCAGTCTGCATTAAAACAAAGTCTATTATACAGCCAGTATTCCTTTTCTGCTCCTTTGTTATTTTCTTCAGAAATTCAACTATTACTAGTTTTTCCATAATCCATACTAAAGTTTAAATGCTTGGCAACGTTTCTAAATTTAGCTATATCAATTAATTGCTGTGGTGGGGCAGGGGAAATGTCTGTTTTTAGTCAATTGATGTCAGTTTTTCAAAGAGGAAATTGAAAATTTTGAAGGGTCTACCAGTTTTTATAGTATATCGAGGGCTTTATTTTCTTCATAATTGATAATTTTGTTTCTCATGGAAGAGTCTTGTTTGTTTGTGTAGTTGAGCATCTAGATTGAAACAAAACATACTCGTCAACTAGTGGAATTAGGAATGAACGTGACAATGTAATATATTTGCATTTCTATACAAGCAAAAACAAATAAGCCCATGAAAAGACTAGGAATTATGCTAGTAGAAAGGAGGGTTGTATTCTCCTGCAATAAGGAAACAGAAGGGGAGTCAATAACGGCCCTAGGTTCGAGGCAGAAAAGGAGTCGACATTTAAGATTTAGGTATTTGATAGAGCTGTGGTGTAAAGCAGAGAAAATCTGGCCTTTGTTTTGATGATATTGCGAAGCAAGGAAATAGAATGAAGAGTTGGATGGAATGTTGTATGTGAACTTTATCCTTTTTAGGGGAGGGGAGGGCCTCAGACCTCTGGGGAAGCACAAGAAAGAGAGGGCTTTAATTTGTTTAGGGAACTTCTCAGAACATTGTCTTTATCTAGTAGTGGAAGATTGCTACCTGGTATCCCTGGTTGCTGATGAAGATTGTATATACTTTCTAAACCTTTTACCCACTTCATTTCCATGTATTGCTGAGTAATTTATATTCTTTTTCCCAAATCAATGTTATCTCCTCCTCATTCTCCAGTCTACAACATTTAGAACCGAAACTTTTGATTGAAATAATGAGAAGAGACCAATTCGTATGGTGGATGGAATTGATAGAGCTAGTTTTGCAGTTCGTTGATGTCGATAATCATCTGGCAGTCCTATCGATTTTGTCCCGATTTCTTATATGGCTATTTTCACACACTTCATTGTTTGTTTGCCCCGCCACGTTCATGCTTTCTTCAACACTTTTTGGTTGGTTTCTTCCATGTTAGCTAATGGAGTTCTGAGGATGTAACTACTGGGATATATCAGAGCCTGAAAGCGTGTAGAAGATAATGATGGAGCGGGTCGTAGAGACAATAGCTGGTCCTTACGTTATGCTTTTCTTTGCTTGAATTTCTATGCCAATTTGGAAATGGGAGCAATGGAAATATAGGACACTTATAATCACATTTTCCTTTTTGTTAGTTCTTTGCTGCTTTGCAGTCTCTTGTTAATCATTTGTATTAACTGTGTTTTGTATTTTTTTTTCTTTTTTTTGTACTTAATGATCAATATGCTCAAGCAAATATTCTCGAGTACAAAACTTGATTTGTTTAGT

mRNA sequence

ATGGCTATTTCTTCACTCTCTGCTACTATAATTCCATCTCCTACATTGTTTGGTCCCTTGTCATCCCATTCTTCTAAACCTAGACTTCTTCCCTTCTCTGGTTCCTCTTCTACCGTTTCAAAGCTCAAACCCCTCCAATTTTCGTTGCCGTCGACTAGGGTTTATGCTGCTCCTGAAGTTCTCGACTCCCCCGACACCATCGAACCGCCTCCGGAAATCCTGGAGGGTTCTGGAGCTGCCGCTCTCGAGGGTGAAGATTTTGAGGCGCCTGGGACTTCAGCGCTTAGCATTGGTGAGGATGTGGATAAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGAAACACAAATGCAAAAACCATGGGTCCTGTGCCATTACCAACGAAAAAACGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAGCGCCTGATCGATATTTTGTACCCTACTGCCCAAACTATCGATTCTTTGATGCAACTAGACCTTCCAGCTGGTGTTGATGTGGAGGTCAAGCTATGA

Coding sequence (CDS)

ATGGCTATTTCTTCACTCTCTGCTACTATAATTCCATCTCCTACATTGTTTGGTCCCTTGTCATCCCATTCTTCTAAACCTAGACTTCTTCCCTTCTCTGGTTCCTCTTCTACCGTTTCAAAGCTCAAACCCCTCCAATTTTCGTTGCCGTCGACTAGGGTTTATGCTGCTCCTGAAGTTCTCGACTCCCCCGACACCATCGAACCGCCTCCGGAAATCCTGGAGGGTTCTGGAGCTGCCGCTCTCGAGGGTGAAGATTTTGAGGCGCCTGGGACTTCAGCGCTTAGCATTGGTGAGGATGTGGATAAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGAAACACAAATGCAAAAACCATGGGTCCTGTGCCATTACCAACGAAAAAACGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAGCGCCTGATCGATATTTTGTACCCTACTGCCCAAACTATCGATTCTTTGATGCAACTAGACCTTCCAGCTGGTGTTGATGTGGAGGTCAAGCTATGA

Protein sequence

MAISSLSATIIPSPTLFGPLSSHSSKPRLLPFSGSSSTVSKLKPLQFSLPSTRVYAAPEVLDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL

Homology

[Close]

BLAST of Spg017921 vs. NCBI nr
Match: XP_008462962.2 (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo])

HSP 1 Score: 379.8 bits (974), Expect = 1.5e-101
Identity = 195/206 (94.66%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFGPLSSHSSKPRLLPFSGSSSTVSKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF  LSSHSSKP+ LPF GSSST  KLKPLQFSLPSTRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS DTIEPPPEILEGSG A LEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Spg017921 vs. NCBI nr
Match: XP_022940678.1 (30S ribosomal protein S10, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 379.4 bits (973), Expect = 2.0e-101
Identity = 194/206 (94.17%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFGPLSSHSSKPRLLPFSGSSSTVSKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLFGP+SS SSKP+LLPFS SS++VSKL PLQFSL STRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSP TIEPPPEILEGSGAA LEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+D+ARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQILDSARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Spg017921 vs. NCBI nr
Match: KAG7037344.1 (30S ribosomal protein S10, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 379.0 bits (972), Expect = 2.6e-101
Identity = 194/206 (94.17%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFGPLSSHSSKPRLLPFSGSSSTVSKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLFGP+SS SSKP+LLPFS SS++VSKL PLQFSL STRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSP TIEPPPEILEGSGAA LEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Spg017921 vs. NCBI nr
Match: XP_022981608.1 (30S ribosomal protein S10, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 377.5 bits (968), Expect = 7.5e-101
Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFGPLSSHSSKPRLLPFSGSSSTVSKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLFGP+SS SSKP+LLPFS SS++VSKL PLQFSL STRVYAAPEV
Sbjct: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 66

Query: 61  LDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSP T EPPPEILEGSGAA LEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 67  LDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 126

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 127 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 186

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 187 LYPTAQTIDSLMQLDLPAGVDVEVKL 212

[Close]

BLAST of Spg017921 vs. NCBI nr
Match: XP_038899555.1 (30S ribosomal protein S10, chloroplastic [Benincasa hispida] >XP_038899556.1 30S ribosomal protein S10, chloroplastic [Benincasa hispida])

HSP 1 Score: 377.5 bits (968), Expect = 7.5e-101
Identity = 193/206 (93.69%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFGPLSSHSSKPRLLPFSGSSSTVSKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF  LSSHSSKP+LLPFSG SST  KLKPLQFSLP+TRVY APEV
Sbjct: 1   MAISSLSATIIPSPTLFSSLSSHSSKPKLLPFSGLSSTALKLKPLQFSLPTTRVYVAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS DTIEPPPEILEGSG A LEGEDFE PGTSAL IGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALGIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Spg017921 vs. ExPASy Swiss-Prot
Match: Q9M4Y3 (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.7e-63
Identity = 143/212 (67.45%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFGPLSSHSSKPRLLPFSGSSS------TVSKLKPLQFSLPSTRV 60
           MA SSLS TI+ SP      SS  +KP++   S  SS      T+S   P   S  + RV
Sbjct: 1   MATSSLS-TIVFSPLALSNSSSFPNKPQVSNLSLHSSLSNLRRTLSHSSPSSSSSSNVRV 60

Query: 61  YAAPEVLDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKL 120
           +AAPEVL+S +T  P   + EGS              TSAL IG D D++APKQKIRIKL
Sbjct: 61  FAAPEVLESQET-GPESYVEEGS-------------ETSALGIGADSDQMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQIMDAAR TNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

[Close]

BLAST of Spg017921 vs. ExPASy Swiss-Prot
Match: Q9LK61 (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.9e-63
Identity = 138/210 (65.71%), Postives = 161/210 (76.67%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFG-PLSSHSS---KPRLLPFSGSSSTVSKLKPLQFSLPSTRVYA 60
           MA+S++S+ ++PS   FG P SS SS   K  LLP S +   +S     + S+  T+V+A
Sbjct: 1   MAVSTVSSFLLPS---FGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFA 60

Query: 61  APEVLDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRS 120
                  PDT++P PEIL+   +        E P +S++S+  D DK+APKQKIRIKLRS
Sbjct: 61  V------PDTLDPTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKLRS 120

Query: 121 YWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180
           YWVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR
Sbjct: 121 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180

Query: 181 LIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           +IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 MIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of Spg017921 vs. ExPASy Swiss-Prot
Match: P82162 (30S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS10 PE=1 SV=2)

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-56
Identity = 132/217 (60.83%), Postives = 148/217 (68.20%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTL-----------FGPLSSHSSKPRLLPFSGSSSTVSKLKPLQFSL 60
           MA SS+SA ++   TL           F  LSS + +  L P   S  T+S       + 
Sbjct: 1   MATSSISAALLSPLTLRNASSSSTKQDFSTLSSLNLRRTLTPTLQSGHTLS-------NS 60

Query: 61  PSTRVYAAPEVLDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQK 120
            +   +AAP  L          E+LE S  +  +G +     TS +SI  D D++APKQK
Sbjct: 61  SNFATFAAPGAL----------EVLETSPDSFEDGSE-----TSKISIAADSDQMAPKQK 120

Query: 121 IRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHF 180
           IRIKLRSYWVPLIEDSCKQIMDAAR TNAK MGPVPLPTKKRIYCVLKSPHVHKDARFHF
Sbjct: 121 IRIKLRSYWVPLIEDSCKQIMDAARTTNAKIMGPVPLPTKKRIYCVLKSPHVHKDARFHF 180

Query: 181 EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 195

[Close]

BLAST of Spg017921 vs. ExPASy Swiss-Prot
Match: P17009 (Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 9.0e-33
Identity = 65/98 (66.33%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 109 KIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRI+LRSY   L+E+SC+QI++AA+ T+A  +GP+PLPTKK+IYCVL+SPHV KD+R H
Sbjct: 8   KIRIQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR H+R+ID+  P+++TID+L +LDLPAGVDVEVKL
Sbjct: 68  FEIRVHRRIIDLYLPSSKTIDTLTRLDLPAGVDVEVKL 105

[Close]

BLAST of Spg017921 vs. ExPASy Swiss-Prot
Match: B7K833 (30S ribosomal protein S10 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rpsJ PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-32
Identity = 62/100 (62.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 107 KQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 166
           +QKIRI+L+++   L++ SC++I+D A  TNA  +GP+PLPTK+R+YCVL+SPHV KD+R
Sbjct: 6   QQKIRIRLKAFDRRLLDTSCEKIVDTANRTNATAIGPIPLPTKRRVYCVLRSPHVDKDSR 65

Query: 167 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
            HFE RTH+R+IDI  P+++TID+LM+LDLPAGVD+EVKL
Sbjct: 66  EHFETRTHRRIIDIYQPSSKTIDALMKLDLPAGVDIEVKL 105

[Close]

BLAST of Spg017921 vs. ExPASy TrEMBL
Match: A0A1S3CI46 (30S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 7.3e-102
Identity = 195/206 (94.66%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFGPLSSHSSKPRLLPFSGSSSTVSKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF  LSSHSSKP+ LPF GSSST  KLKPLQFSLPSTRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS DTIEPPPEILEGSG A LEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Spg017921 vs. ExPASy TrEMBL
Match: A0A6J1FPZ5 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446197 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 9.5e-102
Identity = 194/206 (94.17%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFGPLSSHSSKPRLLPFSGSSSTVSKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLFGP+SS SSKP+LLPFS SS++VSKL PLQFSL STRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSP TIEPPPEILEGSGAA LEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+D+ARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQILDSARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Spg017921 vs. ExPASy TrEMBL
Match: A0A6J1J2J9 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480677 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.6e-101
Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFGPLSSHSSKPRLLPFSGSSSTVSKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLFGP+SS SSKP+LLPFS SS++VSKL PLQFSL STRVYAAPEV
Sbjct: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 66

Query: 61  LDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSP T EPPPEILEGSGAA LEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 67  LDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 126

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 127 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 186

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 187 LYPTAQTIDSLMQLDLPAGVDVEVKL 212

[Close]

BLAST of Spg017921 vs. ExPASy TrEMBL
Match: A0A0A0LEH6 (Ribosomal_S10 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G769090 PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 4.0e-100
Identity = 191/206 (92.72%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFGPLSSHSSKPRLLPFSGSSSTVSKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF  LSSHSSKP+  PF  SSST  KLKPLQFS PSTR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSPDTIEPPPEILEGSG + LEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Spg017921 vs. ExPASy TrEMBL
Match: A0A6J1F6U3 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442692 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.4e-98
Identity = 190/206 (92.23%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFGPLSSHSSKPRLLPFSGSSSTVSKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSP+LF PLSS   KPR LPFSGSSST  KLKPL FSLPS+RVYAAPEV
Sbjct: 1   MAISSLSATIIPSPSLFVPLSSLHPKPRFLPFSGSSSTALKLKPLHFSLPSSRVYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS D  EPPPEILE SGAA LEGEDFEAPGTSA SIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDANEPPPEILEDSGAATLEGEDFEAPGTSAFSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Spg017921 vs. TAIR 10
Match: AT3G13120.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 242.3 bits (617), Expect = 3.5e-64
Identity = 138/210 (65.71%), Postives = 161/210 (76.67%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFG-PLSSHSS---KPRLLPFSGSSSTVSKLKPLQFSLPSTRVYA 60
           MA+S++S+ ++PS   FG P SS SS   K  LLP S +   +S     + S+  T+V+A
Sbjct: 1   MAVSTVSSFLLPS---FGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFA 60

Query: 61  APEVLDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRS 120
                  PDT++P PEIL+   +        E P +S++S+  D DK+APKQKIRIKLRS
Sbjct: 61  V------PDTLDPTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKLRS 120

Query: 121 YWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180
           YWVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR
Sbjct: 121 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180

Query: 181 LIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           +IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 MIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of Spg017921 vs. TAIR 10
Match: AT3G13120.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 242.3 bits (617), Expect = 3.5e-64
Identity = 138/210 (65.71%), Postives = 161/210 (76.67%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFG-PLSSHSS---KPRLLPFSGSSSTVSKLKPLQFSLPSTRVYA 60
           MA+S++S+ ++PS   FG P SS SS   K  LLP S +   +S     + S+  T+V+A
Sbjct: 1   MAVSTVSSFLLPS---FGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFA 60

Query: 61  APEVLDSPDTIEPPPEILEGSGAAALEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRS 120
                  PDT++P PEIL+   +        E P +S++S+  D DK+APKQKIRIKLRS
Sbjct: 61  V------PDTLDPTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKLRS 120

Query: 121 YWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180
           YWVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR
Sbjct: 121 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180

Query: 181 LIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           +IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 MIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

The following BLAST results are available for this feature:

BLAST of Spg017921 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462962.2	1.5e-101	94.66	PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo]	[more]
XP_022940678.1	2.0e-101	94.17	30S ribosomal protein S10, chloroplastic-like [Cucurbita moschata]	[more]
KAG7037344.1	2.6e-101	94.17	30S ribosomal protein S10, chloroplastic [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022981608.1	7.5e-101	93.69	30S ribosomal protein S10, chloroplastic-like [Cucurbita maxima]	[more]
XP_038899555.1	7.5e-101	93.69	30S ribosomal protein S10, chloroplastic [Benincasa hispida] >XP_038899556.1 30S...	[more]

BLAST of Spg017921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M4Y3	1.7e-63	67.45	30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=354...	[more]
Q9LK61	4.9e-63	65.71	30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82162	1.2e-56	60.83	30S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=R...	[more]
P17009	9.0e-33	66.33	Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 ...	[more]
B7K833	3.4e-32	62.00	30S ribosomal protein S10 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 G...	[more]

BLAST of Spg017921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CI46	7.3e-102	94.66	30S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224...	[more]
A0A6J1FPZ5	9.5e-102	94.17	30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1J2J9	3.6e-101	93.69	30S ribosomal protein S10, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A0A0LEH6	4.0e-100	92.72	Ribosomal_S10 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G7690...	[more]
A0A6J1F6U3	6.4e-98	92.23	30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Spg017921 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13120.1	3.5e-64	65.71	Ribosomal protein S10p/S20e family protein	[more]
AT3G13120.2	3.5e-64	65.71	Ribosomal protein S10p/S20e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 109..122 score: 42.58 coord: 165..179 score: 52.82 coord: 144..159 score: 53.37
IPR001848	Ribosomal protein S10	TIGRFAM	TIGR01049	TIGR01049	coord: 108..205 e-value: 1.2E-39 score: 132.6
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 1..206
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 107..206 score: 24.177229
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 111..205 e-value: 3.9E-51 score: 185.9
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 111..205 e-value: 1.9E-32 score: 111.4
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	3.30.70.600	Ribosomal protein S10 domain	coord: 98..206 e-value: 3.7E-41 score: 141.7
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	54999	Ribosomal protein S10	coord: 109..206
None	No IPR available	PANTHER	PTHR11700:SF31	BNAC05G40270D PROTEIN	coord: 1..206
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 133..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017921.1	Spg017921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding