Spg017854 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017854
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Location	scaffold9: 31917904 .. 31921372 (-)
RNA-Seq Expression	Spg017854
Synteny	Spg017854

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAATACCAAACTCCATACCTCAGACACCAGATAAGGCAGTTAGCCTGCTTCTGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACAAGGATGGATAGAAGATGTTTTGCCATTCTATGTAGTCTGTTGAGAACGACGTCCGGGTTGGTAGGAACGAAAATCGTAGACGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGACGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGACTTTTTGCCAAGATGGGAGGTGGAAATGGTTTGAGGTATGGACACTATACGTTTGTAAACATCGTTAAGATTTTACAATGTCCTTCTGACATTTGTAATGCGATGTGGAAACAGAATTGTTTAGGTGCATTGGACGGTTGATGCGCAAATTTGCATACCGCAAGTGTACGGGTCAAGTAATAATATAGTGTTTTCGTGTAAAACGAGTGTCGTCCTCTGGATTGGTTTTCTAGCAAATTAAGTATCGTGAATACTTTGGTTCAATTTTATTTAGGGAGCAAAACTTAATGAAAAAGATAAATCTAAAGACAAAAAGCATAAAATAAAGGTGGAGACTCAAAGGGAAAGACTCTTAGGGAATTGATTTCATTGATTAAGATTGAGGATTGATTAATAGGAATGAATTGACCGTGCAATTATTCTACAAGCCAAGGAAACTTTTATCACGATTACCTCTCCCGAGTATAATTGATTCTCATGCATATAAACTAACTTGATATCCCTATCTAAGTTCATTAACATGCAAGGCATTATTCGGTTCGGTCCTTGTTACGCTTCTAAAGATATTCCAAATCCCGTCACAAACTTAGAATTTCTACTCTAGTCATGCAATTAAACAAAGTAAGTCTTAGGCCAAATCCTCCCTCCCGAGTTAGATTCAACACTTAAATCATTCAATTAGTGATCAAGTAATTGAAAGCATTAAACGAAATTGCATGCATAAAATAAAAACACATTCATACCTAAAATCAATCCAAAAACTAAAACAATTACATCAATCCCTAAGACAAACAACTAGCAATTCATAGTCTTTAAACCATAAACACTAATTGAAAGAAAAGCCATAAAAACTACAAGAGGTAAGAGAAAGAGAAAGGAAAACTCGAATCCGTCGAAACCGACACGTCCCCGTCACGATCTCCACGTCTTCTCGCTTGATTCCCGCTCCTTGGCCTTGCTTTAGCTCCCACCAAAGGTCTCTAGTCGAAATTAGGGCTAAAATCTAACCAATTGGACTCCCCTAATCCGTAGCTGAAAAGAGGAATTTATAGAAAATCTGTCGATAGCGTCGAGACGCTGTCGCGATACCGCGAATCTGGAAAATTTGTCGAGAGTGTCGCGACGCTATGATTTTTTTTTTTTTTTTAAATCAGCTGGGCTGAATTTGACTTCTTCCAACTTGATCCTTTTTCGATCTTTTAGCCCTTTTTCATGTCCCGAACATGCAATTAGCTCAAATATTTATTTCCTACAAAAACAACACAAAAACGCATCATTTTGGCCAATAAATTATAAAAGACTAGATAAATTAATTAGGGAAAACTAGCTAGCTATGCTCGCTATCAACGGTACGTACGTAAAGGTCCATGTTAGTGCAGCTGATCGACCAAGGTATAGGACGCGAAAGGGTGAGATTGCAACAAATGTATTGGGCGTTGTGTCCCTAAAAGGTGAATTCATTTTTGTTATGCCGGGATGGGAAGGTTCGGCTGCTGATTCTCGTGTACTCAGAGATGCTATATCACGCCCCAATGGACTAATAGTGCCGAAGGGTATGGAACGAAGTATGAATGTAAAATAGGATCGATTACGTCATCCTTTGGTATTAAACATCTTTTATGAACAGGTTACTACTACCTCTGTGATGCCGGGTACCCAAACGCAGAGGGTTTCTTGGCACCTTATAGAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGAGGCAATCCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTTCTGCACGGAATGTTATCGAGAGAGCATTCGGTGCTCTAAAAGGACGGTGGGCGATACTTCGGGGGAAGTCCTACTACCCTGCTCGGACCCAGTGTCGAATCATAACAGCGTGCTGTTTACTCCACAACCTTATCACCCGGGAGATGGGTCTGGATGTTAGATTGGATGAAGGTGATGTTAGTCGATCTGAACCCGTACCTCTAGATGGTGAGAACATAACCTTCATTCAAAGCTCCACTGAATGGACGCAAAAGCGAGATGACCTAGCGAACAGGATGTTCAACGCGTGGGGGCAACATAATCCCTGATCCAGTTTCGACATACGACTATCTGCTATGTTGTAATTTATATAGTTTTGACATTTCTTCGGCCGTACATTTTTTCTACAATCTAAACGATCTATTCCATGTAACTCAGTTTAGATTTATGGAAAACAATCGTTAATGTTGTTATTCTACATTATGTTTCTAACTTCTTGTCTGCGATTACTTCATAACTAACTATTCTACATTATGTCGCCGATAGTGTGAATTGATCAGAATACATACTTACGAAATCTAATGACACAATACTTTATCCATGTAGACTAATGGCAGGTGCAGATAAACAACAGAAGCACATTTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACAGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCGACCTGCACCATAGAGTCAACGTCTGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGTAATACAGTGCCATCTCGGAGATGTTGGGTCCGGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGGTACGATCATTAGTCATTCATTGATGTAACTCATGTACAATATCGTTGCTAAAACACTCTTCAATACATGCAGTCACACTCGGCCGCAAAGGGGCTGCTGAACAAGCCATTTCCTCATTACGAGGATCTTGCTTTCGTGTTCGGCAAAGACAGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCAGAACAGGCAGACAACACCCACGGGGACGACGAGGGTGATCAGAATGTCCAGGCAGAACAGGATTGTTACGTCCCCGCTCTTCCAGACATTAATCTGGCCGCGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAAGGTCCTCCTAG

mRNA sequence

ATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAATACCAAACTCCATACCTCAGACACCAGATAAGGCAGTTAGCCTGCTTCTGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACAAGGATGGATAGAAGATGTTTTGCCATTCTATGTAGTCTGTTGAGAACGACGTCCGGGTTGGTAGGAACGAAAATCGTAGACGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGACGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGACTTTTTGCCAAGATGGGAGGTGGAAATGGTTTGAGGTGCATTGGACGGTTGATGCGCAAATTTGCATACCGCAAGTGTACGGGTCAAGTGCAGATAAACAACAGAAGCACATTTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACAGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCGACCTGCACCATAGAGTCAACGTCTGTAATAGACTGCAAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGTCACACTCGGCCGCAAAGGGGCTGCTGAACAAGCCATTTCCTCATTACGAGGATCTTGCTTTCGTGTTCGGCAAAGACAGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCAGAACAGGCAGACAACACCCACGGGGACGACGAGGGTGATCAGAATGTCCAGGCAGAACAGGATTGTTACGTCCCCGCTCTTCCAGACATTAATCTGGCCGCGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAAGGTCCTCCTAG

Coding sequence (CDS)

ATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAATACCAAACTCCATACCTCAGACACCAGATAAGGCAGTTAGCCTGCTTCTGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACAAGGATGGATAGAAGATGTTTTGCCATTCTATGTAGTCTGTTGAGAACGACGTCCGGGTTGGTAGGAACGAAAATCGTAGACGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGACGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGACTTTTTGCCAAGATGGGAGGTGGAAATGGTTTGAGGTGCATTGGACGGTTGATGCGCAAATTTGCATACCGCAAGTGTACGGGTCAAGTGCAGATAAACAACAGAAGCACATTTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACAGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCGACCTGCACCATAGAGTCAACGTCTGTAATAGACTGCAAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGTCACACTCGGCCGCAAAGGGGCTGCTGAACAAGCCATTTCCTCATTACGAGGATCTTGCTTTCGTGTTCGGCAAAGACAGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCAGAACAGGCAGACAACACCCACGGGGACGACGAGGGTGATCAGAATGTCCAGGCAGAACAGGATTGTTACGTCCCCGCTCTTCCAGACATTAATCTGGCCGCGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAAGGTCCTCCTAG

Protein sequence

MADSQRQLFNLINSFMNNHPRIEYQTPYLRHQIRQLACFWLIHESDLCCRESTRMDRRCFAILCSLLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPEPITTFCQDGRWKWFEVHWTVDAQICIPQVYGSSADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNRTFRAGYLARLKRMIKDKMPTCTIESTSVIDCKAEREVYDAWVKSHSAAKGLLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADNTHGDDEGDQNVQAEQDCYVPALPDINLAADMDFEDVPITPTSRPSTARSS

Homology

[Close]

BLAST of Spg017854 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.6 bits (610), Expect = 4.0e-59
Identity = 179/536 (33.40%), Postives = 232/536 (43.28%), Query Frame = 0


Query: 4   SQRQLFNLINSFMNNHPRIEYQTPYLRHQIRQLACFWLIHESDLCCRESTRMDRRCFAIL 63
           SQRQL  ++    N+  RI +     RH+IRQLA F +IH SDL CR+STRMDRRCFAIL
Sbjct: 16  SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAIL 75

Query: 64  CSLLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAV 123
           C LLRT +GL  T++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGET+SRHFN  L AV
Sbjct: 76  CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAV 135

Query: 124 LRLYDVLLKKPEPITTFCQDGRWKWFE--------------------------------- 183
           +RL+D LLKKP+P+   C D RW+WFE                                 
Sbjct: 136 IRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATN 195

Query: 184 -------------------------------------------VHWTVD----------- 243
                                                       ++ VD           
Sbjct: 196 VLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLA 255

Query: 244 --------------------------------AQICIPQVYG------------------ 303
                                           A+  I + +G                  
Sbjct: 256 PYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYHPVE 315

Query: 304 --------------------------------SSADKQQKHIWTRQEEARLVESLVELVH 338
                                           +S+ +  KH WT++EEA     LVELV+
Sbjct: 316 VQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEA----GLVELVN 375

[Close]

BLAST of Spg017854 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 4.4e-58
Identity = 140/316 (44.30%), Postives = 185/316 (58.54%), Query Frame = 0


Query: 55  MDRRCFAILCSLLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSR 114
           MDRRCF ILC++LRT  GL  T+ VDV+EMV +FLHI+AHDVKNRV RR  ARSGETVSR
Sbjct: 1   MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60

Query: 115 HFNATLSAVLRLYDVLLKKPEPITTFCQ-DG-------------RWKW----FEVHWTVD 174
           HFNA L+AVLRL+++LLK+P+P+T  C  DG             R+++       + T  
Sbjct: 61  HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120

Query: 175 AQICIPQV---------YGSSADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNRTFRA 234
             + + Q+           S+  K  KH WT  E+  LVE L++LV EGGWR DN TF+ 
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180

Query: 235 GYLARLKRMIKDKMPTCT----IESTSVIDCKAEREVYDAWVKSHSAAKGLLNKPFPHYE 294
           GYL +   + +   P C+     E    I+   E+ V+D WVK H  A+GLLNKPFP++ 
Sbjct: 181 GYLKQYTAIAEMMGPACSGFGWNEGQKCIE--VEKPVFDDWVKGHPNAQGLLNKPFPYFY 240

Query: 295 DLAFVFGKDRASGGACNVPAEQADNTHGD-DEGDQNVQAEQDCYVPALPDINLAADMDFE 339
           DL  VFG+DRA+GG C  P E +  T  D +E D ++  E       +P+ +       E
Sbjct: 241 DLEVVFGRDRATGGRCKTPVEMSSQTARDTEEDDMDINLEDF----DIPNPHGLEPPSGE 300

[Close]

BLAST of Spg017854 vs. NCBI nr
Match: KAA0041291.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.0 bits (598), Expect = 9.8e-58
Identity = 145/347 (41.79%), Postives = 186/347 (53.60%), Query Frame = 0


Query: 55  MDRRCFAILCSLLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSR 114
           MDRRCF ILC LLRT +GL   ++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGET+SR
Sbjct: 1   MDRRCFTILCHLLRTVAGLTSIEVVDVEEMVAMFLHIVAHDVKNRVIQREFMRSGETISR 60

Query: 115 HFNATLSAVLRLYDVLLKKPEPITTFCQDGRWKWFEVHWTVDAQICIPQVYGSSADK--- 174
           HFN  L  V+RL+D LLKKP+P+   C D RW+WFEV   +  Q+ +    GS+AD    
Sbjct: 61  HFNMVLLVVIRLHDKLLKKPQPVNNDCTDQRWRWFEV--PISLQLLLAGWEGSAADSRIL 120

Query: 175 ------------------------------------QQKHI--W---------------- 234
                                               Q+ H+  W                
Sbjct: 121 HDAISRPNGLKVPKGYYYLVDAGYPNVDGFLAAYRGQRYHLQEWRGVENAPSTSKEFFNM 180

Query: 235 -------TRQEEARLVESLVELVHEGGWRGDNRTFRAGYLARLKRMIKDKMPTCTIESTS 294
                  T++EEA LVE LVELV+ GGWR DN TF  GYL +L R++  K+         
Sbjct: 181 KHSSARNTKEEEAGLVECLVELVNGGGWRSDNGTFHPGYLNQLARVMAFKI--------- 240

Query: 295 VIDCKAEREVYDAWVKSHSAAKGLLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADNTH 338
                 E+EV+D WVKSH AAKGLLNK F HY++L++VFGKDRA+ G        A+N  
Sbjct: 241 -----LEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATEGRAE---SFANNGS 300

[Close]

BLAST of Spg017854 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 3.9e-54
Identity = 125/305 (40.98%), Postives = 170/305 (55.74%), Query Frame = 0


Query: 66  LLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLR 125
           +LRT  GL  T+ VDVEEMV +FLHI+AHDVKNRV RR FARSGETVSRHFN  L+ VLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 126 LYDVLLKKPEPITTFCQDGRWKWFEVHWTVDAQICIPQVYGSSADKQQKHIWTRQEEARL 185
           L+++LLK+P+ +T  C   +W+WF++               S   K  KH WT  E+  L
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQM--------------ASINSKVTKHWWTTIEDEAL 120

Query: 186 VESLVELVHEGGWRGDNRTFRAGYLARLKRMIKDKMPTCTIESTSVID------------ 245
           VE L++LV +G WR DN TF+ GYL ++++++K+K+    I+ T  ++            
Sbjct: 121 VECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTT 180

Query: 246 --------------------CKAEREVYDAWVKSHSAAKGLLNKPFPHYEDLAFVFGKDR 305
                                +AE+ V + WVK H  A+ LLNKPFP++ DL  VFG+DR
Sbjct: 181 IAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDR 240

Query: 306 ASGGACNVPAEQADNTHGDDEGDQNVQAEQDCYVPALPDINLAADMDFEDVPITPTSRPS 339
           A+GG C  P E    T  D E D  +   +D  +P    +   +    ED+P TPTS   
Sbjct: 241 ATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAH 288

[Close]

BLAST of Spg017854 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 221.9 bits (564), Expect = 8.6e-54
Identity = 127/313 (40.58%), Postives = 172/313 (54.95%), Query Frame = 0


Query: 66  LLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLR 125
           +LRT  GL  T+ VDVEEMV +FLHI+AHDVKNRV RR FARSGETVSRHFN  L+ VLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 126 LYDVLLKKPEPITTFCQDGRWKWFEVHWTVDAQICIPQVYGSSADKQQKHIWTRQEEARL 185
           L+++LLK+P+ +T  C   +W+WF++               S   K  KH WT  E+  L
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQM--------------ASINSKVTKHWWTTIEDEAL 120

Query: 186 VESLVELVHEGGWRGDNRTFRAGYLARLKRMIKDKMPTCTIESTSVID------------ 245
           VE L++LV +G WR DN TF+ GYL ++++++K+K+    I+ T  ++            
Sbjct: 121 VECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTT 180

Query: 246 --------------------CKAEREVYDAWVKSHSAAKGLLNKPFPHYEDLAFVFGKDR 305
                                +AE+ V + WVK H  A+ LLNKPFP++ DL  VFG+DR
Sbjct: 181 IAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDR 240

Query: 306 ASGGACNVPAEQADNTHGDDEGDQNVQAEQDCYVPALPDINLAADMDFEDVPITPTS--- 339
           A+GG C  P E    T  D E D  +   +D  +P    +   +    ED+P TPTS   
Sbjct: 241 ATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAH 296

[Close]

BLAST of Spg017854 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.9e-59
Identity = 179/536 (33.40%), Postives = 232/536 (43.28%), Query Frame = 0


Query: 4   SQRQLFNLINSFMNNHPRIEYQTPYLRHQIRQLACFWLIHESDLCCRESTRMDRRCFAIL 63
           SQRQL  ++    N+  RI +     RH+IRQLA F +IH SDL CR+STRMDRRCFAIL
Sbjct: 16  SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAIL 75

Query: 64  CSLLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAV 123
           C LLRT +GL  T++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGET+SRHFN  L AV
Sbjct: 76  CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAV 135

Query: 124 LRLYDVLLKKPEPITTFCQDGRWKWFE--------------------------------- 183
           +RL+D LLKKP+P+   C D RW+WFE                                 
Sbjct: 136 IRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATN 195

Query: 184 -------------------------------------------VHWTVD----------- 243
                                                       ++ VD           
Sbjct: 196 VLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLA 255

Query: 244 --------------------------------AQICIPQVYG------------------ 303
                                           A+  I + +G                  
Sbjct: 256 PYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYHPVE 315

Query: 304 --------------------------------SSADKQQKHIWTRQEEARLVESLVELVH 338
                                           +S+ +  KH WT++EEA     LVELV+
Sbjct: 316 VQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEA----GLVELVN 375

[Close]

BLAST of Spg017854 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-58
Identity = 140/316 (44.30%), Postives = 185/316 (58.54%), Query Frame = 0


Query: 55  MDRRCFAILCSLLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSR 114
           MDRRCF ILC++LRT  GL  T+ VDV+EMV +FLHI+AHDVKNRV RR  ARSGETVSR
Sbjct: 1   MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60

Query: 115 HFNATLSAVLRLYDVLLKKPEPITTFCQ-DG-------------RWKW----FEVHWTVD 174
           HFNA L+AVLRL+++LLK+P+P+T  C  DG             R+++       + T  
Sbjct: 61  HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120

Query: 175 AQICIPQV---------YGSSADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNRTFRA 234
             + + Q+           S+  K  KH WT  E+  LVE L++LV EGGWR DN TF+ 
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180

Query: 235 GYLARLKRMIKDKMPTCT----IESTSVIDCKAEREVYDAWVKSHSAAKGLLNKPFPHYE 294
           GYL +   + +   P C+     E    I+   E+ V+D WVK H  A+GLLNKPFP++ 
Sbjct: 181 GYLKQYTAIAEMMGPACSGFGWNEGQKCIE--VEKPVFDDWVKGHPNAQGLLNKPFPYFY 240

Query: 295 DLAFVFGKDRASGGACNVPAEQADNTHGD-DEGDQNVQAEQDCYVPALPDINLAADMDFE 339
           DL  VFG+DRA+GG C  P E +  T  D +E D ++  E       +P+ +       E
Sbjct: 241 DLEVVFGRDRATGGRCKTPVEMSSQTARDTEEDDMDINLEDF----DIPNPHGLEPPSGE 300

[Close]

BLAST of Spg017854 vs. ExPASy TrEMBL
Match: A0A5A7TI01 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002840 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 4.7e-58
Identity = 145/347 (41.79%), Postives = 186/347 (53.60%), Query Frame = 0


Query: 55  MDRRCFAILCSLLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSR 114
           MDRRCF ILC LLRT +GL   ++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGET+SR
Sbjct: 1   MDRRCFTILCHLLRTVAGLTSIEVVDVEEMVAMFLHIVAHDVKNRVIQREFMRSGETISR 60

Query: 115 HFNATLSAVLRLYDVLLKKPEPITTFCQDGRWKWFEVHWTVDAQICIPQVYGSSADK--- 174
           HFN  L  V+RL+D LLKKP+P+   C D RW+WFEV   +  Q+ +    GS+AD    
Sbjct: 61  HFNMVLLVVIRLHDKLLKKPQPVNNDCTDQRWRWFEV--PISLQLLLAGWEGSAADSRIL 120

Query: 175 ------------------------------------QQKHI--W---------------- 234
                                               Q+ H+  W                
Sbjct: 121 HDAISRPNGLKVPKGYYYLVDAGYPNVDGFLAAYRGQRYHLQEWRGVENAPSTSKEFFNM 180

Query: 235 -------TRQEEARLVESLVELVHEGGWRGDNRTFRAGYLARLKRMIKDKMPTCTIESTS 294
                  T++EEA LVE LVELV+ GGWR DN TF  GYL +L R++  K+         
Sbjct: 181 KHSSARNTKEEEAGLVECLVELVNGGGWRSDNGTFHPGYLNQLARVMAFKI--------- 240

Query: 295 VIDCKAEREVYDAWVKSHSAAKGLLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADNTH 338
                 E+EV+D WVKSH AAKGLLNK F HY++L++VFGKDRA+ G        A+N  
Sbjct: 241 -----LEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATEGRAE---SFANNGS 300

[Close]

BLAST of Spg017854 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.9e-54
Identity = 125/305 (40.98%), Postives = 170/305 (55.74%), Query Frame = 0


Query: 66  LLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLR 125
           +LRT  GL  T+ VDVEEMV +FLHI+AHDVKNRV RR FARSGETVSRHFN  L+ VLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 126 LYDVLLKKPEPITTFCQDGRWKWFEVHWTVDAQICIPQVYGSSADKQQKHIWTRQEEARL 185
           L+++LLK+P+ +T  C   +W+WF++               S   K  KH WT  E+  L
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQM--------------ASINSKVTKHWWTTIEDEAL 120

Query: 186 VESLVELVHEGGWRGDNRTFRAGYLARLKRMIKDKMPTCTIESTSVID------------ 245
           VE L++LV +G WR DN TF+ GYL ++++++K+K+    I+ T  ++            
Sbjct: 121 VECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTT 180

Query: 246 --------------------CKAEREVYDAWVKSHSAAKGLLNKPFPHYEDLAFVFGKDR 305
                                +AE+ V + WVK H  A+ LLNKPFP++ DL  VFG+DR
Sbjct: 181 IAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDR 240

Query: 306 ASGGACNVPAEQADNTHGDDEGDQNVQAEQDCYVPALPDINLAADMDFEDVPITPTSRPS 339
           A+GG C  P E    T  D E D  +   +D  +P    +   +    ED+P TPTS   
Sbjct: 241 ATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAH 288

[Close]

BLAST of Spg017854 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.2e-54
Identity = 127/313 (40.58%), Postives = 172/313 (54.95%), Query Frame = 0


Query: 66  LLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLR 125
           +LRT  GL  T+ VDVEEMV +FLHI+AHDVKNRV RR FARSGETVSRHFN  L+ VLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 126 LYDVLLKKPEPITTFCQDGRWKWFEVHWTVDAQICIPQVYGSSADKQQKHIWTRQEEARL 185
           L+++LLK+P+ +T  C   +W+WF++               S   K  KH WT  E+  L
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQM--------------ASINSKVTKHWWTTIEDEAL 120

Query: 186 VESLVELVHEGGWRGDNRTFRAGYLARLKRMIKDKMPTCTIESTSVID------------ 245
           VE L++LV +G WR DN TF+ GYL ++++++K+K+    I+ T  ++            
Sbjct: 121 VECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTT 180

Query: 246 --------------------CKAEREVYDAWVKSHSAAKGLLNKPFPHYEDLAFVFGKDR 305
                                +AE+ V + WVK H  A+ LLNKPFP++ DL  VFG+DR
Sbjct: 181 IAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDR 240

Query: 306 ASGGACNVPAEQADNTHGDDEGDQNVQAEQDCYVPALPDINLAADMDFEDVPITPTS--- 339
           A+GG C  P E    T  D E D  +   +D  +P    +   +    ED+P TPTS   
Sbjct: 241 ATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAH 296

[Close]

BLAST of Spg017854 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 8.7e-12
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 49  CRESTRMDRRCFAILCSLLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVIRRQFARS 108
           C E+ RMD+  F  LC LL+T   L  T  + +E  +A+FL II H+++ R ++  F  S
Sbjct: 42  CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101

Query: 109 GETVSRHFNATLSAVLRL 127
           GET+SRHFN  L+AV+ +
Sbjct: 102 GETISRHFNNVLNAVIAI 119

[Close]

BLAST of Spg017854 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 9.3e-06
Identity = 28/85 (32.94%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 42  IHESDLCCRESTRMDRRCFAILCSLLRTTSGLVGTKIVDVEEMVAMFLHIIAHDVKNRVI 101
           I+ +++ C+   RM    F  LC +L    GL  +  + ++E VA+FL I A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 102 RRQFARSGETVSRHFNATLSAVLRL 127
             +F  + ET+ R F+  L A+ RL
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERL 101

The following BLAST results are available for this feature:

BLAST of Spg017854 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034843.1	4.0e-59	33.40	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07921.1	4.4e-58	44.30	hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]	[more]
KAA0041291.1	9.8e-58	41.79	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK26842.1	3.9e-54	40.98	uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]	[more]
KAA0033487.1	8.6e-54	40.58	uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]	[more]

BLAST of Spg017854 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg017854 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWD8	1.9e-59	33.40	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C7T4	2.1e-58	44.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TI01	4.7e-58	41.79	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DTL0	1.9e-54	40.98	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SW62	4.2e-54	40.58	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Spg017854 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	8.7e-12	43.59	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28730.1	9.3e-06	32.94	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 30..150
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 30..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017854.1	Spg017854.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding