Spg017800 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017800
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LRR receptor-like serine/threonine-protein kinase GSO1-like
Location	scaffold9: 36329737 .. 36330081 (+)
RNA-Seq Expression	Spg017800
Synteny	Spg017800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAATTGTCTACAGCGGGACGGTGCGGCGGCGCGGTGGGCCGACGACGACGACGACTGGGACTTTCTCGCCCCGGTGGAGGACGAGGACGGCCGGGAAGGGCTTCTTGGCCACGCCCTCAAAAGACAGGGATCCGCCGCGGCGTCCACGGCGGCGACGTCCACCGAGGTCAAGATTAAGATCACGAAGAGGCAGCTGGAGGAGCTCTTGGGGAAGGTTGATATTAAAGAGATGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGGCGTCGGCGAGCAGTTTCACGAGTCGCGCCACCGTCCCTGGCGGCCGGTGTTGCAGAGCATACCGGAAGTCGACTGA

mRNA sequence

ATGGGCAATTGTCTACAGCGGGACGGTGCGGCGGCGCGGTGGGCCGACGACGACGACGACTGGGACTTTCTCGCCCCGGTGGAGGACGAGGACGGCCGGGAAGGGCTTCTTGGCCACGCCCTCAAAAGACAGGGATCCGCCGCGGCGTCCACGGCGGCGACGTCCACCGAGGTCAAGATTAAGATCACGAAGAGGCAGCTGGAGGAGCTCTTGGGGAAGGTTGATATTAAAGAGATGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGGCGTCGGCGAGCAGTTTCACGAGTCGCGCCACCGTCCCTGGCGGCCGGTGTTGCAGAGCATACCGGAAGTCGACTGA

Coding sequence (CDS)

ATGGGCAATTGTCTACAGCGGGACGGTGCGGCGGCGCGGTGGGCCGACGACGACGACGACTGGGACTTTCTCGCCCCGGTGGAGGACGAGGACGGCCGGGAAGGGCTTCTTGGCCACGCCCTCAAAAGACAGGGATCCGCCGCGGCGTCCACGGCGGCGACGTCCACCGAGGTCAAGATTAAGATCACGAAGAGGCAGCTGGAGGAGCTCTTGGGGAAGGTTGATATTAAAGAGATGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGGCGTCGGCGAGCAGTTTCACGAGTCGCGCCACCGTCCCTGGCGGCCGGTGTTGCAGAGCATACCGGAAGTCGACTGA

Protein sequence

MGNCLQRDGAAARWADDDDDWDFLAPVEDEDGREGLLGHALKRQGSAAASTAATSTEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGEQFHESRHRPWRPVLQSIPEVD

Homology

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BLAST of Spg017800 vs. NCBI nr
Match: XP_022936225.1 (uncharacterized protein LOC111442898 [Cucurbita moschata] >KAG6592042.1 hypothetical protein SDJN03_14388, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024918.1 hypothetical protein SDJN02_13738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 3.6e-36
Identity = 87/114 (76.32%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MGNCLQRDGAAARWADDDDDWDFLAPVEDEDGREGLLGHALKRQGSAAASTAATSTEVKI 60
           MGNCL+RDGAAA+WA   ++WDFLA   ++DGREGLLG   K++ S AA      TEVKI
Sbjct: 1   MGNCLRRDGAAAQWA--GEEWDFLA--AEDDGREGLLGEIEKKKSSTAA------TEVKI 60

Query: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVGEQFHESRHRPWRPVLQSIPEVD 115
           KITKRQLEELLGKVDIKEMSVQQVLAQLIGVG+QFHESRHR WRPVLQSIPEVD
Sbjct: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of Spg017800 vs. NCBI nr
Match: XP_022975730.1 (uncharacterized protein LOC111475920 [Cucurbita maxima])

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-35
Identity = 85/114 (74.56%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MGNCLQRDGAAARWADDDDDWDFLAPVEDEDGREGLLGHALKRQGSAAASTAATSTEVKI 60
           MGNCL+RDGAAA+WA   ++WD LA   ++DGREGLLG   K++ S       T+TEVKI
Sbjct: 1   MGNCLRRDGAAAQWA--GEEWDLLA--AEDDGREGLLGENEKKKSS------TTATEVKI 60

Query: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVGEQFHESRHRPWRPVLQSIPEVD 115
           KITKRQLEELLGKVDIKEMSVQQVLAQLIGVG+QFHESRHR WRPVLQSIPEVD
Sbjct: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

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BLAST of Spg017800 vs. NCBI nr
Match: XP_023536165.1 (uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-35
Identity = 85/114 (74.56%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MGNCLQRDGAAARWADDDDDWDFLAPVEDEDGREGLLGHALKRQGSAAASTAATSTEVKI 60
           MGNC++RDGAAA+WA   ++WDFLA   ++DGREGLLG   K++ S AA      TEVKI
Sbjct: 1   MGNCIRRDGAAAQWA--GEEWDFLA--AEDDGREGLLGEIEKKKSSTAA------TEVKI 60

Query: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVGEQFHESRHRPWRPVLQSIPEVD 115
           KITKRQLEELLGKVDIKEMSVQQVLAQLIGV +QFHESRHR WRPVLQSIPEVD
Sbjct: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVDDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of Spg017800 vs. NCBI nr
Match: XP_038896531.1 (uncharacterized protein LOC120084782 [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 4.8e-33
Identity = 82/114 (71.93%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MGNCLQRDGAAARWADDDDDWDFLAPVEDEDGREGLLGHALKRQGSAAASTAATSTEVKI 60
           MGNCL+RD A A+WA   +DWDFLA  E  DG+EGLL    K++ SAA ++   +T VKI
Sbjct: 1   MGNCLRRDDAVAQWA--GEDWDFLA-AEGHDGQEGLLRDGEKKKCSAAVASTTAAT-VKI 60

Query: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVGEQFHESRHRPWRPVLQSIPEVD 115
           KITKRQLEELLGKVDIKE+SVQQVLAQLIGVG+QFHESRHR WRPVLQ IPEVD
Sbjct: 61  KITKRQLEELLGKVDIKEISVQQVLAQLIGVGDQFHESRHRHWRPVLQCIPEVD 110

[Close]

BLAST of Spg017800 vs. NCBI nr
Match: XP_022139678.1 (uncharacterized protein LOC111010526 [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 3.8e-30
Identity = 77/114 (67.54%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 1   MGNCLQRDGAAARWADDDDDWDFLAPVEDEDGREGLLGHALKRQGSAAASTAATSTEVKI 60
           MGNCL+RDGAA RWA   ++W FLA                ++QGSAAA TAA +TEVKI
Sbjct: 1   MGNCLRRDGAAERWA--GEEWGFLAE---------------EKQGSAAAPTAA-ATEVKI 60

Query: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVGEQFHESRHRPWRPVLQSIPEVD 115
           KITK+QLEELLGK D+K +SVQQVLAQLI VG+QFHESRHRPWRPVLQSIPE+D
Sbjct: 61  KITKKQLEELLGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 96

[Close]

BLAST of Spg017800 vs. ExPASy TrEMBL
Match: A0A6J1FD17 (uncharacterized protein LOC111442898 OS=Cucurbita moschata OX=3662 GN=LOC111442898 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.7e-36
Identity = 87/114 (76.32%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MGNCLQRDGAAARWADDDDDWDFLAPVEDEDGREGLLGHALKRQGSAAASTAATSTEVKI 60
           MGNCL+RDGAAA+WA   ++WDFLA   ++DGREGLLG   K++ S AA      TEVKI
Sbjct: 1   MGNCLRRDGAAAQWA--GEEWDFLA--AEDDGREGLLGEIEKKKSSTAA------TEVKI 60

Query: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVGEQFHESRHRPWRPVLQSIPEVD 115
           KITKRQLEELLGKVDIKEMSVQQVLAQLIGVG+QFHESRHR WRPVLQSIPEVD
Sbjct: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of Spg017800 vs. ExPASy TrEMBL
Match: A0A6J1IHJ3 (uncharacterized protein LOC111475920 OS=Cucurbita maxima OX=3661 GN=LOC111475920 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-35
Identity = 85/114 (74.56%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MGNCLQRDGAAARWADDDDDWDFLAPVEDEDGREGLLGHALKRQGSAAASTAATSTEVKI 60
           MGNCL+RDGAAA+WA   ++WD LA   ++DGREGLLG   K++ S       T+TEVKI
Sbjct: 1   MGNCLRRDGAAAQWA--GEEWDLLA--AEDDGREGLLGENEKKKSS------TTATEVKI 60

Query: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVGEQFHESRHRPWRPVLQSIPEVD 115
           KITKRQLEELLGKVDIKEMSVQQVLAQLIGVG+QFHESRHR WRPVLQSIPEVD
Sbjct: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of Spg017800 vs. ExPASy TrEMBL
Match: A0A6J1CG88 (uncharacterized protein LOC111010526 OS=Momordica charantia OX=3673 GN=LOC111010526 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.8e-30
Identity = 77/114 (67.54%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 1   MGNCLQRDGAAARWADDDDDWDFLAPVEDEDGREGLLGHALKRQGSAAASTAATSTEVKI 60
           MGNCL+RDGAA RWA   ++W FLA                ++QGSAAA TAA +TEVKI
Sbjct: 1   MGNCLRRDGAAERWA--GEEWGFLAE---------------EKQGSAAAPTAA-ATEVKI 60

Query: 61  KITKRQLEELLGKVDIKEMSVQQVLAQLIGVGEQFHESRHRPWRPVLQSIPEVD 115
           KITK+QLEELLGK D+K +SVQQVLAQLI VG+QFHESRHRPWRPVLQSIPE+D
Sbjct: 61  KITKKQLEELLGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 96

[Close]

BLAST of Spg017800 vs. ExPASy TrEMBL
Match: A0A5D2QUV4 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A04G022400v1 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 63/122 (51.64%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 1   MGNCLQRDGAAARWADDDDDW-DFLAPVEDEDG-------REGLLGHALKRQGSAAASTA 60
           MGNCL R  ++ +WA   DDW    A   D+DG        +G++G   ++ G    S+ 
Sbjct: 1   MGNCL-RHQSSTQWA--GDDWGTTAADYGDDDGFSDIKTKEKGIVGDHHQKDGFITTSST 60

Query: 61  ATSTEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGEQFHESRHRPWRPVLQSIPE 115
            T  EVK+KITK+QLEELLG+VD+KE+SVQQVLAQLI V  QF E+  R WRP LQSIPE
Sbjct: 61  PTVHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPE 119

[Close]

BLAST of Spg017800 vs. ExPASy TrEMBL
Match: A0A6P4LWZ9 (uncharacterized protein LOC108452348 OS=Gossypium arboreum OX=29729 GN=LOC108452348 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 63/122 (51.64%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 1   MGNCLQRDGAAARWADDDDDW-DFLAPVEDEDG-------REGLLGHALKRQGSAAASTA 60
           MGNCL R  ++ +WA   DDW    A   D+DG        +G++G   ++ G    S+ 
Sbjct: 1   MGNCL-RHQSSTQWA--GDDWGTTAADYGDDDGFSDIKTKEKGIVGDHHQKDGFITTSST 60

Query: 61  ATSTEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGEQFHESRHRPWRPVLQSIPE 115
            T  EVK+KITK+QLEELLG+VD+KE+SVQQVLAQLI V  QF E+  R WRP LQSIPE
Sbjct: 61  PTVHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPE 119

[Close]

BLAST of Spg017800 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 5.5e-11
Identity = 41/130 (31.54%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 1   MGNCL-QRDGAAARWADDDDD--------WDFLAPVEDEDGREGLLGHALKRQGSAAAST 60
           MGNC+   +     W+ DD+                +D D  E LLG       S ++S+
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGET-SNVTSTSSSS 60

Query: 61  AATSTEVKIKITKRQLEELLGKVDIKEMSVQQVLAQL-------IGVGEQFHESRHRPWR 115
           ++   E+KI+ITK++LE+L+  + +K ++ +++L++L       IG       + H+PW+
Sbjct: 61  SSERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWK 120

[Close]

BLAST of Spg017800 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-10
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 1   MGNCLQRDGAAARWADDDDDWDFLAPVEDEDGREGLLGHALKRQGSAA-----ASTAATS 60
           MGNCL+ + +   WA   +DWD     ++ED           R G        + ++  S
Sbjct: 1   MGNCLRHE-SEMHWA--GEDWDEFITEDEEDHH---YSSKTTRDGKPVIVTRDSKSSVPS 60

Query: 61  TEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGEQFHE--SRHRPWRPVLQSIPEV 115
            E+KI++TK+QL +LL KV++ +++ QQ       +  + +E  ++ R WRPVLQSIPEV
Sbjct: 61  HEIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPILNNRGYEEANQQRLWRPVLQSIPEV 115

The following BLAST results are available for this feature:

BLAST of Spg017800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936225.1	3.6e-36	76.32	uncharacterized protein LOC111442898 [Cucurbita moschata] >KAG6592042.1 hypothet...	[more]
XP_022975730.1	3.9e-35	74.56	uncharacterized protein LOC111475920 [Cucurbita maxima]	[more]
XP_023536165.1	3.9e-35	74.56	uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo]	[more]
XP_038896531.1	4.8e-33	71.93	uncharacterized protein LOC120084782 [Benincasa hispida]	[more]
XP_022139678.1	3.8e-30	67.54	uncharacterized protein LOC111010526 [Momordica charantia]	[more]

BLAST of Spg017800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg017800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FD17	1.7e-36	76.32	uncharacterized protein LOC111442898 OS=Cucurbita moschata OX=3662 GN=LOC1114428...	[more]
A0A6J1IHJ3	1.9e-35	74.56	uncharacterized protein LOC111475920 OS=Cucurbita maxima OX=3661 GN=LOC111475920...	[more]
A0A6J1CG88	1.8e-30	67.54	uncharacterized protein LOC111010526 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A5D2QUV4	1.7e-20	51.64	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A04G022400v1 P...	[more]
A0A6P4LWZ9	1.7e-20	51.64	uncharacterized protein LOC108452348 OS=Gossypium arboreum OX=29729 GN=LOC108452...	[more]

BLAST of Spg017800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	5.5e-11	31.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT3G20340.1	3.6e-10	33.88	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..113
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017800.1	Spg017800.1	mRNA