Spg017625 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg017625
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Locationscaffold9: 31721447 .. 31724152 (-)
RNA-Seq ExpressionSpg017625
SyntenySpg017625
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTGACCAAATTCCAATTTCTTCAGCATTGAGGAAGAAAAGGAGAAGAGAAATTAAAGCTGAGAGGAGAACAAAGAATAAGAATGATCCTATATTCGCGAAGAGGCTGAGGACTAGGTCCATGGATGCATCTTGTGTACCTCCTACCACCACACCGACCAAGAAAAAGGTTGCATCGCCAAAGAATCCATTCCCCGAGGTTTTCAAAGATGTGAATTTCCAGGAAAGAATGGAGATCATGAGGAAGTGGGACTTCTTGAATGAGAGGGATTCTCAAGCAGAGCAAGGACCTTGCCTGACTTCGTGATCAAAATCATTACTCAGTACAAGTGGCAAGAATTTTGTGTTCACCCTCAAGAGGCCGTGGTGCCTCTAGTTCGAGAGTTTTATGCAGGACTGAGGGAAGAAAGCTTGAGTTTGGCGTTTGTACGTGGGAAAATGGTGAGCTTCTCCTCAGTTGACATATACAGGGTCTATCAGATCAAAGCTCATTTGCATCCGAGAGGCAATGATGCAATAAAAAACCCTTCGGCCAAGTAATTGAAGGAAGCATTGAAATTGGTGGCCAGGAAGGGAGTCCAATAGAAAGAATCTCAGACAAAAGTGAAGACTCTTGTGCCAAGCAATCTAAAGCCTGAACCAGCAGTTTGGCTTCACTTTATTAAAAACAGGTTGATGCCCACCACCCATAACACAACGATTTCAGTAGAGAGGGTCATGCTTCTCTACAACATAATGAGGGGCTGGAAATCAATATTGGGAGCATCATTAGAGAGGAGATTCTGTCATGTGGCAGAAAGAGAGCAGAGAAGCTATTCTTTGGGTCCCTCATAACCCAACTATGTCAGAGAGTCAAGATTGTTCCTGGAAAGGACGAGGAGCGACATTTTTACAAGCCTACCATTGACTTGCCTCTTATCGGGAAGCTGCAGCAGAACAATGCACAAAGGAAAGATAAAGCTTCTGCCTCTCAAGATACTCCTTCTCCGGGGTTGACATCTACTTCACAAACAAGGAAAAACTAAATATGGAAAGAAAGAAAATAAGGAAAAAAATGCAATCTACCTAAAAATAACAATAAAAATAAAAATACACCCTAAATTAAGACCGGATAATTTTTCTACGATATTAATTTGACTAACTATGTCAATCCCCGACAACGGCGTCAAAAACTTTATGCGCAAATTGCTAACCGTAAGTCTACGGGCCAAGTTATAATATAGTGATTTATTAGATCGAATGTCGTCCTCTGGATTGGTTTTCTAATCAAATTAAGTACCACAATTACTTATGTCCAATTTTATCTTGGGAACAACTTATAGTGAGAATGAATGGAAAACAAACACAAAGCAAGCTAAAAGTATGGAAATCAAATGATGGAAAACTCTTAGGGAGTTGATTTCACCAATTGGGATTATGAATTAATTAATGGATGATTTAACATGCTATGTTTCATAAATCTAGGAATAACTTAAATCATATTTATCTCTCCCGAGCATAAATAATTCTCTCACATGTAATGAATTCAATATCCCTATCTAAACTCATTAACATGCAAGGCCTTAAGTCTAATCCTTTTTAACGATTTCCAAGATTATCTTAAATCGCCCGATCTTAAGACTATCCTAGTTATGCATACCGAGATCTAAGCTAAATCCCCTCTCCTGAGCAAGAATTACACAAAACATCATTCAATTCATGGCCAATAAATTGAAAGCATTAAGGGACTTCTATGCATAAATGAAATCACAACATACATCAAAAAATCAATCCATAATGGCCAAAGGCTACATCAAACCCTAAGATAATAAACTTAGCTACTCATACACAGCATTACGATATAAACTAAGTCTAAAACAGCAATTAAAAACAACTAAAGTATGAGAGAAAGGAGATTAAACACTAAAGTCACCGAAACCGCACGTCTCCGTCACGATCTCCACGAGCCAAGCCTTCGAATCCCGCTCCTCAACTTTCTTCAGCTCCCACAAAAGGTTTTTAGTCGAGTTTAGGGCTAAAATTACATCAAAAGACGTCCCCTTGACCAGCCCTAATCGCATTCTATTTATAGAGGTTCTGTCGACACCGTCGAGACGCTATAGCACAACGTCTCGACGCTGTGCTCTTTTGCCGCCTGAATCAAATAAGGAAAATTCCAGCATCGAGACACTTAGAAACTAGCGTCTGGATGCTGGCTCTCATATTGGTCTCATCTAAAAGCTTCCAACTTCGATTTATGTTCGTTTCCTTGGCCTCTTTTCACGTCCCGAACAGCCGATCAACTTCATTTTCATGATTTAACTCCAATAAATGATTCCTACAAATAGAACATTAAAATGCATAAATTTAGCCAATTAAATATCAAAGACTAACTAAAATAGATATGGAAAAATAGCTTGCTATGTTCGCTATCACACTTCCATCACATACTCCTATTTCAGGGCCTACACCATCATCCGAGGTCCTTGCATTTTCTTTCCAACAGCTAGACCGCATTGAAGATAGATTGAAAACTTATTGGGTCTACGCAAAGGAAAGGGATGAAGCAATTAGAGAGTTTTATCTCTTTATCGCCCCGAGCATCGCCCCTGTTTTTCTAGATTTCCTCAAAGTTTGCTGCCTCAAGATGAAAAAGAATCTAATGAAGGAGAAGAAGAAGTCGAAGAAGGTTCCTCGGATGAGGAATAGGGGAGTTTTCTGA

mRNA sequence

ATGGATGGTGACCAAATTCCAATTTCTTCAGCATTGAGGAAGAAAAGGAGAAGAGAAATTAAAGCTGAGAGGAGAACAAAGAATAAGAATGATCCTATATTCGCGAAGAGGCTGAGGACTAGGTCCATGGATGCATCTTGTGTACCTCCTACCACCACACCGACCAAGAAAAAGGTTGCATCGCCAAAGAATCCATTCCCCGAGTACAAGTGGCAAGAATTTTGTGTTCACCCTCAAGAGGCCGTGGTGCCTCTAGTTCGAGAGTTTTATGCAGGACTGAGGGAAGAAAGCTTGAGTTTGGCGTTTGTACGTGGGAAAATGGTGAGCTTCTCCTCAGTTGACATATACAGGGTCTATCAGATCAAAGCTCATTTGCATCCGAGAGGCAATGATGCAATAAAAAACCCTTCGGCCAACATCATTAGAGAGGAGATTCTGTCATGTGGCAGAAAGAGAGCAGAGAAGCTATTCTTTGGGTCCCTCATAACCCAACTATGTCAGAGAGTCAAGATTGTTCCTGGAAAGGACGAGGAGCGACATTTTTACAAGCCTACCATTGACTTGCCTCTTATCGGGAAGCTGCAGCAGAACAATGCACAAAGGAAAGATAAAGCTTCTGCCTCTCAAGATACTCCTTCTCCGGGGTTCTGTCGACACCGTCGAGACGCTATAGCACAACGTCTCGACGCTGTGCTCTTTTGCCGCCTGAATCAAATAAGGAAAATTCCAGCATCGAGACACTTAGAAACTAGCGTCTGGATGCTGGCTCTCATATTGCTAGACCGCATTGAAGATAGATTGAAAACTTATTGGGTCTACGCAAAGGAAAGGGATGAAGCAATTAGAGAGTTTTATCTCTTTATCGCCCCGAGCATCGCCCCTGTTTTTCTAGATTTCCTCAAAGTTTGCTGCCTCAAGATGAAAAAGAATCTAATGAAGGAGAAGAAGAAGTCGAAGAAGGTTCCTCGGATGAGGAATAGGGGAGTTTTCTGA

Coding sequence (CDS)

ATGGATGGTGACCAAATTCCAATTTCTTCAGCATTGAGGAAGAAAAGGAGAAGAGAAATTAAAGCTGAGAGGAGAACAAAGAATAAGAATGATCCTATATTCGCGAAGAGGCTGAGGACTAGGTCCATGGATGCATCTTGTGTACCTCCTACCACCACACCGACCAAGAAAAAGGTTGCATCGCCAAAGAATCCATTCCCCGAGTACAAGTGGCAAGAATTTTGTGTTCACCCTCAAGAGGCCGTGGTGCCTCTAGTTCGAGAGTTTTATGCAGGACTGAGGGAAGAAAGCTTGAGTTTGGCGTTTGTACGTGGGAAAATGGTGAGCTTCTCCTCAGTTGACATATACAGGGTCTATCAGATCAAAGCTCATTTGCATCCGAGAGGCAATGATGCAATAAAAAACCCTTCGGCCAACATCATTAGAGAGGAGATTCTGTCATGTGGCAGAAAGAGAGCAGAGAAGCTATTCTTTGGGTCCCTCATAACCCAACTATGTCAGAGAGTCAAGATTGTTCCTGGAAAGGACGAGGAGCGACATTTTTACAAGCCTACCATTGACTTGCCTCTTATCGGGAAGCTGCAGCAGAACAATGCACAAAGGAAAGATAAAGCTTCTGCCTCTCAAGATACTCCTTCTCCGGGGTTCTGTCGACACCGTCGAGACGCTATAGCACAACGTCTCGACGCTGTGCTCTTTTGCCGCCTGAATCAAATAAGGAAAATTCCAGCATCGAGACACTTAGAAACTAGCGTCTGGATGCTGGCTCTCATATTGCTAGACCGCATTGAAGATAGATTGAAAACTTATTGGGTCTACGCAAAGGAAAGGGATGAAGCAATTAGAGAGTTTTATCTCTTTATCGCCCCGAGCATCGCCCCTGTTTTTCTAGATTTCCTCAAAGTTTGCTGCCTCAAGATGAAAAAGAATCTAATGAAGGAGAAGAAGAAGTCGAAGAAGGTTCCTCGGATGAGGAATAGGGGAGTTTTCTGA

Protein sequence

MDGDQIPISSALRKKRRREIKAERRTKNKNDPIFAKRLRTRSMDASCVPPTTTPTKKKVASPKNPFPEYKWQEFCVHPQEAVVPLVREFYAGLREESLSLAFVRGKMVSFSSVDIYRVYQIKAHLHPRGNDAIKNPSANIIREEILSCGRKRAEKLFFGSLITQLCQRVKIVPGKDEERHFYKPTIDLPLIGKLQQNNAQRKDKASASQDTPSPGFCRHRRDAIAQRLDAVLFCRLNQIRKIPASRHLETSVWMLALILLDRIEDRLKTYWVYAKERDEAIREFYLFIAPSIAPVFLDFLKVCCLKMKKNLMKEKKKSKKVPRMRNRGVF
Homology
[Close]
BLAST of Spg017625 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-04
Identity = 29/84 (34.52%), Postives = 42/84 (50.00%), Query Frame = 0 

Query: 68  EYKWQEFCVHPQEAVVPLVREFYAGLREESLSLAFVRGKMVSFSSVDIYRVYQIKAHL-- 127
           ++ WQ FC HP++ +VPLVREFYA +        +VRG  V  SS  I  +Y +   +  
Sbjct: 60  QHNWQLFCAHPEDPIVPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGDPIDE 119

Query: 128 HPRGNDAIKNPSANIIREEILSCG 150
           H    +AI  P    + E +   G
Sbjct: 120 HSEFVEAITEPELATVLETVAIAG 143

[Close]
BLAST of Spg017625 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-04
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 68  EYKWQEFCVHPQEAVVPLVREFYAGLREESLSLAFVRGKMVSFSSVDIYRVY 120
           ++ W++FC HP++ +VPLVREFYA L +   +  +VRG  VS+S   I  V+
Sbjct: 69  QHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVF 120

[Close]
BLAST of Spg017625 vs. NCBI nr
Match: CAN60970.1 (hypothetical protein VITISV_026408 [Vitis vinifera])

HSP 1 Score: 55.8 bits (133), Expect = 8.0e-04
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 0 

Query: 68   EYKWQEFCVHPQEAVVPLVREFYAGLREESLSLAFVRGKMVSFS 112
            E KW  FC  PQ A+VP+VREFYA + E      FVRGK V FS
Sbjct: 1197 ERKWDNFCAQPQVAIVPVVREFYANVPEHHHRXVFVRGKQVGFS 1240

[Close]
BLAST of Spg017625 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 55.8 bits (133), Expect = 8.0e-04
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 68  EYKWQEFCVHPQEAVVPLVREFYAGLREESLSLAFVRGKMVSFSSVDIYRVY 120
           ++ W++FC HP++ +VPLVREFYA L +   +  +VRG  VS+S   I  V+
Sbjct: 60  QHNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVF 111

[Close]
BLAST of Spg017625 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 29/84 (34.52%), Postives = 42/84 (50.00%), Query Frame = 0 

Query: 68  EYKWQEFCVHPQEAVVPLVREFYAGLREESLSLAFVRGKMVSFSSVDIYRVYQIKAHL-- 127
           ++ WQ FC HP++ +VPLVREFYA +        +VRG  V  SS  I  +Y +   +  
Sbjct: 60  QHNWQLFCAHPEDPIVPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGDPIDE 119

Query: 128 HPRGNDAIKNPSANIIREEILSCG 150
           H    +AI  P    + E +   G
Sbjct: 120 HSEFVEAITEPELATVLETVAIAG 143

[Close]
BLAST of Spg017625 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-04
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 68  EYKWQEFCVHPQEAVVPLVREFYAGLREESLSLAFVRGKMVSFSSVDIYRVY 120
           ++ W++FC HP++ +VPLVREFYA L +   +  +VRG  VS+S   I  V+
Sbjct: 69  QHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVF 120

[Close]
BLAST of Spg017625 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-04
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 68  EYKWQEFCVHPQEAVVPLVREFYAGLREESLSLAFVRGKMVSFSSVDIYRVY 120
           ++ W++FC HP++ +VPLVREFYA L +   +  +VRG  VS+S   I  V+
Sbjct: 60  QHNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVF 111

[Close]
BLAST of Spg017625 vs. ExPASy TrEMBL
Match: A5B5G7 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_026408 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-04
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 0 

Query: 68   EYKWQEFCVHPQEAVVPLVREFYAGLREESLSLAFVRGKMVSFS 112
            E KW  FC  PQ A+VP+VREFYA + E      FVRGK V FS
Sbjct: 1197 ERKWDNFCAQPQVAIVPVVREFYANVPEHHHRXVFVRGKQVGFS 1240

[Close]
BLAST of Spg017625 vs. ExPASy TrEMBL
Match: A0A2P5A7C9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_361130 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-04
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 68  EYKWQEFCVHPQEAVVPLVREFYAGLREESLSLAFVRGKMVSFSSVDIYRVY 120
           ++ W++FC HP++ +VPLVREFYA L +      +VRG  V +S   I  VY
Sbjct: 13  QHNWRQFCAHPEDPIVPLVREFYAHLTDPEEDTVYVRGMQVPWSEEAINAVY 64

The following BLAST results are available for this feature:
BLAST of Spg017625 vs. NCBI nr
Match NameE-valueIdentityDescription
PON65868.12.1e-0434.52hypothetical protein PanWU01x14_113570 [Parasponia andersonii][more]
PON46472.14.7e-0444.23hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
CAN60970.18.0e-0456.82hypothetical protein VITISV_026408 [Vitis vinifera][more]
PON35554.18.0e-0444.23hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
BLAST of Spg017625 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg017625 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5CXV11.0e-0434.52Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE... [more]
A0A2P5BCG42.3e-0444.23Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5AGA53.9e-0444.23Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A5B5G73.9e-0456.82Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... [more]
A0A2P5A7C95.0e-0444.23Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_361130 PE... [more]
BLAST of Spg017625 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg017625.1Spg017625.1mRNA