Spg016316 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016316
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA ligase
Location	scaffold9: 43703907 .. 43704284 (+)
RNA-Seq Expression	Spg016316
Synteny	Spg016316

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAACGACTACAATCCTTTTTCATTCACTCACAAGCTCAAATCTTCCATCCGCTGTTTCCGCCCCGATCATGGCCATTTGACCGAAAACGAAGACGATTCTCATTCTTCTCCAAGAACTCCCCGATCGCCTCTCAAATCAATGGCGGCAGAGTTCCCGGAGCTCCGCGGTATGTGCCGGAATCTCGTTGCTCGGATCGGCCGGAGCCGCCGCCGGTACCATCACTCCGCGGATTTCCGATACGATCCTTCCAGCTATGCTCTTAATTTCGAGGACGAACAGGTTCGCGATGATGATGAGTTTCCGGTTAGGGATTTTGCTTCGAGATTGCCGGCGTCGCCGCCGACTTCCCGGAGATTTTCGCCGGCGAAATGA

mRNA sequence

ATGTTGAACGACTACAATCCTTTTTCATTCACTCACAAGCTCAAATCTTCCATCCGCTGTTTCCGCCCCGATCATGGCCATTTGACCGAAAACGAAGACGATTCTCATTCTTCTCCAAGAACTCCCCGATCGCCTCTCAAATCAATGGCGGCAGAGTTCCCGGAGCTCCGCGGTATGTGCCGGAATCTCGTTGCTCGGATCGGCCGGAGCCGCCGCCGGTACCATCACTCCGCGGATTTCCGATACGATCCTTCCAGCTATGCTCTTAATTTCGAGGACGAACAGGTTCGCGATGATGATGAGTTTCCGGTTAGGGATTTTGCTTCGAGATTGCCGGCGTCGCCGCCGACTTCCCGGAGATTTTCGCCGGCGAAATGA

Coding sequence (CDS)

ATGTTGAACGACTACAATCCTTTTTCATTCACTCACAAGCTCAAATCTTCCATCCGCTGTTTCCGCCCCGATCATGGCCATTTGACCGAAAACGAAGACGATTCTCATTCTTCTCCAAGAACTCCCCGATCGCCTCTCAAATCAATGGCGGCAGAGTTCCCGGAGCTCCGCGGTATGTGCCGGAATCTCGTTGCTCGGATCGGCCGGAGCCGCCGCCGGTACCATCACTCCGCGGATTTCCGATACGATCCTTCCAGCTATGCTCTTAATTTCGAGGACGAACAGGTTCGCGATGATGATGAGTTTCCGGTTAGGGATTTTGCTTCGAGATTGCCGGCGTCGCCGCCGACTTCCCGGAGATTTTCGCCGGCGAAATGA

Protein sequence

MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPTSRRFSPAK

Homology

[Close]

BLAST of Spg016316 vs. NCBI nr
Match: XP_023523424.1 (uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-56
Identity = 114/125 (91.20%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 60
           MLNDY+PFSFT KLKSSI CFR DHG   ENEDD  SSPRTPRSPLKSMAAEFPELRGMC
Sbjct: 1   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEDD--SSPRTPRSPLKSMAAEFPELRGMC 60

Query: 61  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPTSRR 120
           RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFP+RDFASRLPASPPTSRR
Sbjct: 61  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSRR 120

Query: 121 FSPAK 126
            SPAK
Sbjct: 121 LSPAK 123

[Close]

BLAST of Spg016316 vs. NCBI nr
Match: KAG7031776.1 (hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 112/125 (89.60%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 60
           MLNDY+PFSFT KLKSSI CFR DHG   ENE D  SSPRTPRSPLKSMAAEFPELRGMC
Sbjct: 1   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGD--SSPRTPRSPLKSMAAEFPELRGMC 60

Query: 61  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPTSRR 120
           RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFP+RDFASRLPASPPTS R
Sbjct: 61  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSPR 120

Query: 121 FSPAK 126
            SPAK
Sbjct: 121 LSPAK 123

[Close]

BLAST of Spg016316 vs. NCBI nr
Match: XP_022940408.1 (uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothetical protein SDJN03_01481, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 112/125 (89.60%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 60
           MLNDY+PFSFT KLKSSI CFR DHG   ENE D  SSPRTPRSPLKSMAAEFPELRGMC
Sbjct: 2   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGD--SSPRTPRSPLKSMAAEFPELRGMC 61

Query: 61  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPTSRR 120
           RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFP+RDFASRLPASPPTS R
Sbjct: 62  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSPR 121

Query: 121 FSPAK 126
            SPAK
Sbjct: 122 LSPAK 124

[Close]

BLAST of Spg016316 vs. NCBI nr
Match: XP_022981208.1 (uncharacterized protein LOC111480417 [Cucurbita maxima])

HSP 1 Score: 222.2 bits (565), Expect = 2.4e-54
Identity = 110/125 (88.00%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 60
           MLN+Y+PFSFT KLKSSIRCFR DH    E+EDD  SSPRTPRSPLKSMAAEFPE+RGMC
Sbjct: 2   MLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDD--SSPRTPRSPLKSMAAEFPEIRGMC 61

Query: 61  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPTSRR 120
           RNLVARIGR RRRYHHSADFRYDPSSYALNFEDEQVRDDDEFP+RDFASRLPASPPTSRR
Sbjct: 62  RNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSRR 121

Query: 121 FSPAK 126
            SPAK
Sbjct: 122 LSPAK 124

[Close]

BLAST of Spg016316 vs. NCBI nr
Match: XP_022138148.1 (uncharacterized protein LOC111009386 [Momordica charantia])

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-43
Identity = 96/125 (76.80%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 3   NDYN--PFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 62
           N+YN  PFSFTHKLKSSI CFR DHG L ++ED+  +S R+PRSPLKS A+E  ELRGMC
Sbjct: 4   NEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDE--ASLRSPRSPLKSTASEHTELRGMC 63

Query: 63  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPTSRR 122
           RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R DD+FP+RDFASRLPASP +S  
Sbjct: 64  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASPHSSPI 123

Query: 123 FSPAK 126
           F PAK
Sbjct: 124 FQPAK 126

[Close]

BLAST of Spg016316 vs. ExPASy TrEMBL
Match: A0A6J1FP70 (uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC111446022 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.9e-55
Identity = 112/125 (89.60%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 60
           MLNDY+PFSFT KLKSSI CFR DHG   ENE D  SSPRTPRSPLKSMAAEFPELRGMC
Sbjct: 2   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGD--SSPRTPRSPLKSMAAEFPELRGMC 61

Query: 61  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPTSRR 120
           RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFP+RDFASRLPASPPTS R
Sbjct: 62  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSPR 121

Query: 121 FSPAK 126
            SPAK
Sbjct: 122 LSPAK 124

[Close]

BLAST of Spg016316 vs. ExPASy TrEMBL
Match: A0A6J1J1H3 (uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 110/125 (88.00%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 60
           MLN+Y+PFSFT KLKSSIRCFR DH    E+EDD  SSPRTPRSPLKSMAAEFPE+RGMC
Sbjct: 2   MLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDD--SSPRTPRSPLKSMAAEFPEIRGMC 61

Query: 61  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPTSRR 120
           RNLVARIGR RRRYHHSADFRYDPSSYALNFEDEQVRDDDEFP+RDFASRLPASPPTSRR
Sbjct: 62  RNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSRR 121

Query: 121 FSPAK 126
            SPAK
Sbjct: 122 LSPAK 124

[Close]

BLAST of Spg016316 vs. ExPASy TrEMBL
Match: A0A6J1CC83 (uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009386 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.2e-44
Identity = 96/125 (76.80%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 3   NDYN--PFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 62
           N+YN  PFSFTHKLKSSI CFR DHG L ++ED+  +S R+PRSPLKS A+E  ELRGMC
Sbjct: 4   NEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDE--ASLRSPRSPLKSTASEHTELRGMC 63

Query: 63  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPTSRR 122
           RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R DD+FP+RDFASRLPASP +S  
Sbjct: 64  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASPHSSPI 123

Query: 123 FSPAK 126
           F PAK
Sbjct: 124 FQPAK 126

[Close]

BLAST of Spg016316 vs. ExPASy TrEMBL
Match: A0A0A0L4E2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.4e-38
Identity = 85/118 (72.03%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 1   MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSP-LKSMAAEFPELRGM 60
           M N YNPFSFTHKLKS I CFRPDH      + + H +P +P SP LKSM ++ PELRGM
Sbjct: 1   MFNHYNPFSFTHKLKSPISCFRPDH------DPELHDNPSSPTSPALKSMTSDLPELRGM 60

Query: 61  CRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPP 117
           CR+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DDEFP+RDF SRLPASPP
Sbjct: 61  CRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPP 112

[Close]

BLAST of Spg016316 vs. ExPASy TrEMBL
Match: A0A5A7VBS3 (DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.5e-38
Identity = 89/119 (74.79%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MLNDYNPFSFTHKLKSSI-RCFRPDH-GHLTENEDDSHSSPRTPRSPLKSMAAEFPELRG 60
           M N YNPFSFTHKLKSSI  CFRPDH   L ENEDD+ +        LKSM ++ PELRG
Sbjct: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDDNPA--------LKSMTSDLPELRG 60

Query: 61  MCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPP 117
           MCR+LVARI   SRRRYHHSADFRYDPSSYALNFEDEQVRDD+EFP+RDF SRLPASPP
Sbjct: 61  MCRSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPP 111

[Close]

BLAST of Spg016316 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-11
Identity = 51/137 (37.23%), Postives = 69/137 (50.36%), Query Frame = 0


Query: 9   SFTHKLKSSI---RCFRPDHGHLTEN-EDDSHSSPRTPRSPLKS-----MAAEFPEL--- 68
           S   KLKS      CFR  + H  +N  DD  SSP T     +S     M  + P L   
Sbjct: 10  SLQKKLKSRFCIAGCFRTTNHHHHDNIPDDLPSSPVTTEKSTQSPHGGGMKTKSPRLTRT 69

Query: 69  ----RGMCRNLVARI--------GRSRRRYHHSADFRYDPSSYALNFEDEQVRDD-DEFP 121
                  C++L+ R+        G  +    H+ADF YDPSSYALNF+     D+ D FP
Sbjct: 70  LSKSHEKCKSLIHRMGGGVGGVGGHGKHIRRHTADFHYDPSSYALNFDKGDEDDNIDRFP 129

[Close]

BLAST of Spg016316 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-10
Identity = 47/99 (47.47%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 40  RTPRSP---LKSMAAEFPELRGMCRNLVARIGRSRR-----------RYHHS----ADFR 99
           RTPRSP   LKS A E  ELR  CR + +RI  + R            +HHS     DF 
Sbjct: 47  RTPRSPYEWLKSTAQEL-ELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGDFS 106

Query: 100 YDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPTSRR 121
           YDP SYALNFED  VR DD+    +F +RLP SP T  R
Sbjct: 107 YDPLSYALNFED-NVRADDDGSFPNFTARLPQSPVTKTR 143

[Close]

BLAST of Spg016316 vs. TAIR 10
Match: AT3G48020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 3.2e-04
Identity = 31/70 (44.29%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 61  RNLVARIGRSRRR---YHHSADFRYDPSSYALNFEDEQVRDDDEF---PVRDFASRLPAS 120
           +  + R  R  RR   +  S  FRYDP SY L+FEDE   DDDE     VR F+ R  AS
Sbjct: 59  KTFIRRFNRDPRRGQDWDDSDKFRYDPVSYTLSFEDEDKDDDDEAGVGGVRSFSMRY-AS 118

Query: 121 PPTSRRFSPA 125
            P +   SPA
Sbjct: 119 VPVASGKSPA 127

The following BLAST results are available for this feature:

BLAST of Spg016316 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523424.1	3.4e-56	91.20	uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]	[more]
KAG7031776.1	1.4e-54	89.60	hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022940408.1	1.4e-54	89.60	uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothet...	[more]
XP_022981208.1	2.4e-54	88.00	uncharacterized protein LOC111480417 [Cucurbita maxima]	[more]
XP_022138148.1	1.5e-43	76.80	uncharacterized protein LOC111009386 [Momordica charantia]	[more]

BLAST of Spg016316 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg016316 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FP70	6.9e-55	89.60	uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC1114460...	[more]
A0A6J1J1H3	1.2e-54	88.00	uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417...	[more]
A0A6J1CC83	7.2e-44	76.80	uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A0A0L4E2	3.4e-38	72.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652740 PE=4 SV=1	[more]
A0A5A7VBS3	4.5e-38	74.79	DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=...	[more]

BLAST of Spg016316 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35090.1	2.7e-11	37.23	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
AT5G11070.1	2.3e-10	47.47	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
AT3G48020.1	3.2e-04	44.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..40
None	No IPR available	PANTHER	PTHR33168:SF61	SUBFAMILY NOT NAMED	coord: 11..119
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 11..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016316.1	Spg016316.1	mRNA