Spg016203 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016203
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Dynein light chain
Location	scaffold9: 37198293 .. 37199911 (+)
RNA-Seq Expression	Spg016203
Synteny	Spg016203

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCGACCTATTCCTCGGGTGGAGGAGTAAAGGGAATTGGCATAATTCTGCGAAGATCCCTTGGCGACCACATAGAGAGGATCTGGACGTGGGTGACCCACGAGCTAGCACCAGCCAAAGTTTATCCTATAAGCTCTATATAATTAAATCTCTGGTCCGTCCCTCCTCCGCCCACAGCCACCGTAGCCGCCGCCAGCTCCGCCGTGTGACAGCCATGTTAGAAGGCAAAGCAATCGTCGGAGAGACGGATATGTTGCAGGCCATGCAGCAGGACGCTCTGGACCTTGCGGCTAAAGCCCTTGACAATTTTGATGTCACTGAAGCCACTGACATTGCTCGGTTCATTAAGAAGGTAAAATTACTAAGCATGAACTTCACAGAAAATAATATATGCAAAATTCTATGATTATTTCTTAGTTTGTTGGAAAAATTTGAAGAAGTTAAAGCCCTATGTAAGATCATCCCAAAAAATAAAAAATAAAAAGTTAAATATGAAGAAATGGTCAGTGAACGAGTTTTATTTTTTTATGGATAGAAACAAAAATTTGGTTAATAAATAAATTTTTGAGAGGGGAGATTTGACTTTTGAACTTGTAGTCATGATTTTGTACTATTTTTAACTAGTTAAACTATGCTCAGGTTGAAAATAAAAAATTTTCTTTTTTGATTTTGGTGTGGTTTGCTACACAAAAACTCTCAGGCTAAAGAATTTCAATGAAGGCTATGATTTCTACGCGAACAAGGTTAACTCTAATTATAACTCGATTTGTAAAGGTTTTATATATGATCCATTCAAATGGTGAAGACTCAAGACCTTTATATATCCATAATCAAATACTTACAAATCTCCACCCTCAAACTCAAAAAATAAAACCTTACCAAAAAACTTTTTTATTAATCTCATTGTACAACCGATTTACTCTATATAATATTCGGACACGTTAGGAAACCTTGAATGCGACCATGTAAGATTTTAATTCTTCTTTCCCTAAAAAATCTCCACCCTCTACTTTTTCTTCTCGCCTCCAATGTAACTATGCCCATCCACCATGAACTTTTAGAAACAGAATTCGAAAAACGAAACTGTTATCAAACAAAACTTTCGAAACCGGGATGGTTTGGTTTATTTTAGGGTTACTGATTTATGTGTTGAAAATTGGGCAGGAATTTGACAGGATATATGGGCCAGGATGGCAGTGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGTTTCATCTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTGTTTAGGGGCTCTGCAGGCCCAGAAGAATCTGAGCCAACTCATTTTGCTGCTTTGGAAACTGTCAAAGGATGATGAGATCTTAAAGATTCATCAACCAACCATACTTCTTTCTCTCTGTATCTGCAAATTAATATATAAATCTCTCTGATCTCCTTTTCTGGTTCAGCAAAGTAATTGTAGTTGAAGAAAGAAACTTATATTTTACTGCTTTGTTTACTTTTTTTCTTTCTTTTTCACAGAGTCTCTTTTTGGTGAGACATTTGGATATATATATGGATCAAAACTCAGAGGATATTCAACTTAATGCTAATATATATACTTTGTTTCTGATA

mRNA sequence

ATGTTAGAAGGCAAAGCAATCGTCGGAGAGACGGATATGTTGCAGGCCATGCAGCAGGACGCTCTGGACCTTGCGGCTAAAGCCCTTGACAATTTTGATGTCACTGAAGCCACTGACATTGCTCGGTTCATTAAGAAGGAATTTGACAGGATATATGGGCCAGGATGGCAGTGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGTTTCATCTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTGTTTAGGGGCTCTGCAGGCCCAGAAGAATCTGAGCCAACTCATTTTGCTGCTTTGGAAACTGTCAAAGGATGA

Coding sequence (CDS)

ATGTTAGAAGGCAAAGCAATCGTCGGAGAGACGGATATGTTGCAGGCCATGCAGCAGGACGCTCTGGACCTTGCGGCTAAAGCCCTTGACAATTTTGATGTCACTGAAGCCACTGACATTGCTCGGTTCATTAAGAAGGAATTTGACAGGATATATGGGCCAGGATGGCAGTGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGTTTCATCTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTGTTTAGGGGCTCTGCAGGCCCAGAAGAATCTGAGCCAACTCATTTTGCTGCTTTGGAAACTGTCAAAGGATGA

Protein sequence

MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEESEPTHFAALETVKG

Homology

[Close]

BLAST of Spg016203 vs. NCBI nr
Match: XP_022139644.1 (dynein light chain LC6, flagellar outer arm [Momordica charantia])

HSP 1 Score: 205.7 bits (522), Expect = 2.1e-49
Identity = 98/111 (88.29%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAI+GETDMLQ MQQDALDLAAKALD+FDVTEATDIARFIKKEFDRI+GPGWQCIV
Sbjct: 1   MLEGKAIIGETDMLQGMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIHGPGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEESEPT-HFAALETVKG 111
           GTDFGSFVTHCFGCFIYFCVG+LA+LLFRGSAGP+++EPT  FAALE +KG
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGNLAVLLFRGSAGPQQTEPTDQFAALEALKG 111

[Close]

BLAST of Spg016203 vs. NCBI nr
Match: XP_022941140.1 (dynein light chain 2, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 198.7 bits (504), Expect = 2.5e-47
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAIVGETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEE-SEPTHFAALETVKG 111
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS  P++   PTHFAA ET+KG
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHFAASETLKG 111

[Close]

BLAST of Spg016203 vs. NCBI nr
Match: KAG6607846.1 (hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.8 bits (499), Expect = 9.6e-47
Identity = 97/111 (87.39%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAIVGETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEE-SEPTHFAALETVKG 111
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS  P++   PTHF A ET+KG
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHFPASETLKG 111

[Close]

BLAST of Spg016203 vs. NCBI nr
Match: XP_022981659.1 (dynein light chain 2, cytoplasmic-like [Cucurbita maxima])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 97/111 (87.39%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAIVGETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEE-SEPTHFAALETVKG 111
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS  P++   PTH AA ET+KG
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHLAASETLKG 111

[Close]

BLAST of Spg016203 vs. NCBI nr
Match: XP_038899068.1 (dynein light chain 2, cytoplasmic [Benincasa hispida])

HSP 1 Score: 194.9 bits (494), Expect = 3.7e-46
Identity = 95/112 (84.82%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAI+GETDMLQAMQQDAL+LAAKALD+FDVTEATDIARFIKKEFD+IYG GWQCIV
Sbjct: 1   MLEGKAIIGETDMLQAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDKIYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEES---EPTHFAALETVK 110
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSA  EE    +PT F+ +ET+K
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQQPQPTQFSVMETLK 112

[Close]

BLAST of Spg016203 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.8e-19
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          M E KA++   DM + MQQDA+D A +AL+ F++ +  DIA +IKKEFD+ Y P W CIV
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of Spg016203 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.8e-19
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          M + KA++   DM + MQQDA+D A +AL+ +++ +  DIA FIKKEFD+ Y P W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of Spg016203 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          M++ KA++   DM   MQQDA+D A +AL+ +++ +  DIA +IKKEFD+ Y P W CIV
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Spg016203 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          M + KA++   DM + MQQDA+D A +AL+ +++ +  DIA +IKKEFD+ Y P W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of Spg016203 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-18
Identity = 45/89 (50.56%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          M + KA++   DM + MQQDA+D A +A++ +++ +  DIA +IKKEFD+ Y P W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Spg016203 vs. ExPASy TrEMBL
Match: A0A6J1CDL8 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111010496 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.0e-49
Identity = 98/111 (88.29%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAI+GETDMLQ MQQDALDLAAKALD+FDVTEATDIARFIKKEFDRI+GPGWQCIV
Sbjct: 1   MLEGKAIIGETDMLQGMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIHGPGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEESEPT-HFAALETVKG 111
           GTDFGSFVTHCFGCFIYFCVG+LA+LLFRGSAGP+++EPT  FAALE +KG
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGNLAVLLFRGSAGPQQTEPTDQFAALEALKG 111

[Close]

BLAST of Spg016203 vs. ExPASy TrEMBL
Match: A0A6J1FSQ1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAIVGETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEE-SEPTHFAALETVKG 111
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS  P++   PTHFAA ET+KG
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHFAASETLKG 111

[Close]

BLAST of Spg016203 vs. ExPASy TrEMBL
Match: A0A6J1J2G7 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.1e-47
Identity = 97/111 (87.39%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKAIVGETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEE-SEPTHFAALETVKG 111
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS  P++   PTH AA ET+KG
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHLAASETLKG 111

[Close]

BLAST of Spg016203 vs. ExPASy TrEMBL
Match: A0A6J1IHC9 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111476954 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.8e-46
Identity = 90/110 (81.82%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKA++GETDMLQAMQQ+ALDLAAKALD+FDVTE TDIARFIKKEFD +YG GWQCIV
Sbjct: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEESEPTHFAALETVKG 111
           GTDFGSFVTHC GCFIYFCVGSLA+LLF+GS+G E+  PT F+ LET+KG
Sbjct: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPTQFSILETIKG 110

[Close]

BLAST of Spg016203 vs. ExPASy TrEMBL
Match: A0A2N9J9Z2 (Dynein light chain OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61232 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.0e-45
Identity = 93/109 (85.32%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
           MLEGKA++GETDMLQ MQQDALDLAAKALD FDVTEAT+IARFIKKEFD  YGPGWQCIV
Sbjct: 1   MLEGKAVIGETDMLQTMQQDALDLAAKALDFFDVTEATEIARFIKKEFDGTYGPGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGPEESEPTHFAALETVK 110
           GTDFGSFVTHC GCFIYFC+GSLAILLF+GSAGP E+E   F+ALETVK
Sbjct: 61  GTDFGSFVTHCSGCFIYFCIGSLAILLFKGSAGP-EAETNQFSALETVK 108

[Close]

BLAST of Spg016203 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 150.2 bits (378), Expect = 9.6e-37
Identity = 72/93 (77.42%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          MLEGKA++G+TDM Q M++DAL LA+KALD FDVTE T IARFIKKEFDR YG GWQCIV
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAG 94
          GT FGSFVTHC GCFI+F VGSL ILLF+GS G
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGSVG 93

[Close]

BLAST of Spg016203 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-23
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          MLEGKA V ETDM   MQ  A+ +A+++LD FDV ++  IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS 92
          GT+FG F TH  G FIYF +G+L  L+F+G+
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]

BLAST of Spg016203 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 102.1 bits (253), Expect = 3.0e-22
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIV 60
          MLEGKA+V ++DM   MQ  A+  A++ALD FDV +   IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAGP 95
          G++FG F TH  G FIYF + +L  L+F+G++ P
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGASTP 94

[Close]

BLAST of Spg016203 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 80.5 bits (197), Expect = 9.4e-16
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 12  DMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIVGTDFGSFVTHC 71
           DM   MQ  A   A   LD+ +   +  +A  +KKEFD+ YGP W CIVG+ FGSFVTH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  FGCFIYFCVGSLAILLFRGSAGP 95
            GCFIYF +  L +LLF+    P
Sbjct: 183 TGCFIYFSMDKLYVLLFKTKVRP 205

[Close]

BLAST of Spg016203 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-14
Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 5   KAIVGETDMLQAMQQDALDLAAKALDNFDVTEATDIARFIKKEFDRIYGPGWQCIVGTDF 64
           +A++   DM   MQ++A+++A  A + + V +  DIA  IKKEFD+ +G  W CIVG +F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GSFVTHCFGCFIYFCVGSLAILLFR 90
           GS+VTH    F+YF +   A+LLF+
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFK 121

The following BLAST results are available for this feature:

BLAST of Spg016203 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139644.1	2.1e-49	88.29	dynein light chain LC6, flagellar outer arm [Momordica charantia]	[more]
XP_022941140.1	2.5e-47	88.29	dynein light chain 2, cytoplasmic-like [Cucurbita moschata]	[more]
KAG6607846.1	9.6e-47	87.39	hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022981659.1	1.3e-46	87.39	dynein light chain 2, cytoplasmic-like [Cucurbita maxima]	[more]
XP_038899068.1	3.7e-46	84.82	dynein light chain 2, cytoplasmic [Benincasa hispida]	[more]

BLAST of Spg016203 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	6.8e-19	52.81	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
O96860	6.8e-19	52.81	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
Q22799	1.2e-18	51.69	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q24117	1.5e-18	51.69	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
Q3MHR3	3.4e-18	50.56	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]

BLAST of Spg016203 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDL8	1.0e-49	88.29	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111010496 PE=3 SV=1	[more]
A0A6J1FSQ1	1.2e-47	88.29	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1	[more]
A0A6J1J2G7	6.1e-47	87.39	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1	[more]
A0A6J1IHC9	8.8e-46	81.82	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111476954 PE=3 SV=1	[more]
A0A2N9J9Z2	2.0e-45	85.32	Dynein light chain OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61232 PE=3 SV=1	[more]

BLAST of Spg016203 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27360.1	9.6e-37	77.42	Dynein light chain type 1 family protein	[more]
AT3G16120.1	2.7e-23	57.14	Dynein light chain type 1 family protein	[more]
AT1G52240.2	3.0e-22	53.19	RHO guanyl-nucleotide exchange factor 11	[more]
AT5G20110.1	9.4e-16	48.19	Dynein light chain type 1 family protein	[more]
AT4G15930.1	1.8e-14	43.53	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 9.6E-46 score: 168.0
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 6..89 e-value: 9.1E-33 score: 112.5
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..96
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 1.3E-31 score: 110.5
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	PANTHER	PTHR11886:SF70	DYNEIN LIGHT CHAIN	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016203.1	Spg016203.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding