Spg016057 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016057
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S13
Location	scaffold6: 43613249 .. 43614929 (+)
RNA-Seq Expression	Spg016057
Synteny	Spg016057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGGCCCATCTCAACAGCGCTAGGGTTTCGTGAGTCTCGTCGAGTAGCAGTTGAGGAGGCCATTGCCAGTTTCTGAAGCAGACACAGCTTCCGAATCCCCTCCATAGTCTTCAACAATGGGTCGTATGCACAGCAGAGGGTCAGTTCTTCTTCTTCTCTCTTTCCCTATTTTCTGTTTTCCTTCTGATCCCTCCGACTCAATAACTCAATCCTTCCTCTCAATTGCAGAAAAGGTATTTCGGCTTCCGCATTGCCGTACAAGAGGACTCCACCGAGTTGGCTCAAGATTTCTTCTCAAGATGTAAGTCCCTTTGGCTAAAATGTTTGAGCTACAACTTACTTCCATTGAACCGGACAGTTATGGAATGTGTGTGTTGTGTGTGGGATGATTAGGTTGAGGAAAATATCTGCAAGTTTGCGAAGAAGGGTTTGACTCCGTCTCAGATCGGTGTAATTCTTCGTGATTCTCATGGTATTGCTCAGGTTAAGAGCGTTACTGGCAGCAAGATCTTGCGTATTCTTAAAGCTCATGGTATTTGTTTCTGTTCTTTCTCAATTGAAAATCTTATGTTATGTGAACTTGTACAGTTCAAACACTTCAAATGCTTGTTCGCCTATTTGTTTTGAGTGGCGTTGAATGTAGCCTATTGATATTTGATTGATATAAGGATTAAATGTATCTTAATCTATTGGTTTAAGCTTTTGGTGTAGTGGTAATTTAATGTGTACTTGTTTGGCTGTGATTTTGGTTATCTTCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAAGCCGTCTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGACAAAGACTCGAAATTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCCCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATAGTAAGTGGTCATTGATCTGATTCTCTGTAGTTTATTTTGTTATCTTATTAGAACTTGATGATTATTGTTTTTAAGCTTTGCAATTACTAATTATTAGGGTTGATTTAAATTTCCTCTCTTTATGTGAAGTATTGTATTGCTTTGTGAATCATATAATTCCCTTGCCCTGAAGGATTCTTTGATAATAACATTAGCATCAATCTCCAGTTATGCTTGAACGTCAAAAGAAAAAAAAACTTTTCCCTGCATTTGTTAATTGTTATTAGAAATTTAGTTCTTGGCTATTCAATAACTTTTACTACCATCATCCTTCCTCCCTGGTGATTTATTTATGTTTTCCTTTTTCTTGTTTCAGCGAGTCCACTACTGCTAGCACACTTGTTGCTTGATTTTGTCCACTGCTGCACTTATGGGCGATTAAGATATTTTCATTTACTCCATTTGATGTAAGGTATTTCCATAAAGGTCGTTCTTGATTAGACATTGAATTGTTCCCAGTTATCACAGAAACAACATAATGCTCAATTTTAGTCTTTCTCATAATGATTTTGTAGTTTCTTCCTTGTCTAATTGGACACCATAGTTTTTCTTATGTTAATTATATTTGATATTCTTCCAAACTCAAGGATGGAAATGTCGTGTCTGAAGCATTTTGTGTTAGGTTTCCGCTGCATAAGTAAGCAACCTGGCGTACTGGAATTTTTCAAGCTTATTGGGATTTTGTATGGTGG

mRNA sequence

ATGGGTCGTATGCACAGCAGAGGAAAAGGTATTTCGGCTTCCGCATTGCCGTACAAGAGGACTCCACCGAGTTGGCTCAAGATTTCTTCTCAAGATGTTGAGGAAAATATCTGCAAGTTTGCGAAGAAGGGTTTGACTCCGTCTCAGATCGGTGTAATTCTTCGTGATTCTCATGGTATTGCTCAGGTTAAGAGCGTTACTGGCAGCAAGATCTTGCGTATTCTTAAAGCTCATGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAAGCCGTCTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGACAAAGACTCGAAATTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCCCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATACGAGTCCACTACTGCTAGCACACTTGTTGCTTGA

Coding sequence (CDS)

ATGGGTCGTATGCACAGCAGAGGAAAAGGTATTTCGGCTTCCGCATTGCCGTACAAGAGGACTCCACCGAGTTGGCTCAAGATTTCTTCTCAAGATGTTGAGGAAAATATCTGCAAGTTTGCGAAGAAGGGTTTGACTCCGTCTCAGATCGGTGTAATTCTTCGTGATTCTCATGGTATTGCTCAGGTTAAGAGCGTTACTGGCAGCAAGATCTTGCGTATTCTTAAAGCTCATGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAAGCCGTCTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGACAAAGACTCGAAATTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCCCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATACGAGTCCACTACTGCTAGCACACTTGTTGCTTGA

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Homology

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BLAST of Spg016057 vs. NCBI nr
Match: XP_010053902.1 (40S ribosomal protein S13 [Eucalyptus grandis] >XP_010066926.1 40S ribosomal protein S13 [Eucalyptus grandis] >XP_030468523.1 40S ribosomal protein S13 [Syzygium oleosum] >XP_030468524.1 40S ribosomal protein S13 [Syzygium oleosum] >XP_030529924.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_030529925.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_030544418.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_031376603.1 40S ribosomal protein S13 [Punica granatum] >XP_031381691.1 40S ribosomal protein S13 [Punica granatum] >KAF3439993.1 hypothetical protein FNV43_RR18271 [Rhamnella rubrinervis] >KAF8020424.1 hypothetical protein BT93_G0976 [Corymbia citriodora subsp. variegata] >PON34614.1 Ribosomal protein [Parasponia andersonii] >KAF3440239.1 hypothetical protein FNV43_RR18522 [Rhamnella rubrinervis] >KAF8020425.1 hypothetical protein BT93_G0977 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 300.1 bits (767), Expect = 1.1e-77
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. NCBI nr
Match: KAF3433118.1 (hypothetical protein FNV43_RR24220 [Rhamnella rubrinervis])

HSP 1 Score: 300.1 bits (767), Expect = 1.1e-77
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 106 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 165

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 166 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 225

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 226 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 256

[Close]

BLAST of Spg016057 vs. NCBI nr
Match: XP_010101741.2 (40S ribosomal protein S13 [Morus notabilis] >XP_022152725.1 40S ribosomal protein S13 [Momordica charantia])

HSP 1 Score: 298.9 bits (764), Expect = 2.5e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. NCBI nr
Match: XP_010053901.1 (40S ribosomal protein S13 [Eucalyptus grandis] >XP_022943482.1 40S ribosomal protein S13 [Cucurbita moschata] >XP_023005589.1 40S ribosomal protein S13 [Cucurbita maxima] >XP_023539007.1 40S ribosomal protein S13 [Cucurbita pepo subsp. pepo] >XP_023539008.1 40S ribosomal protein S13 [Cucurbita pepo subsp. pepo] >KAG6596840.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028367.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KCW78278.1 hypothetical protein EUGRSUZ_D02461 [Eucalyptus grandis])

HSP 1 Score: 298.9 bits (764), Expect = 2.5e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

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BLAST of Spg016057 vs. NCBI nr
Match: XP_007038446.1 (PREDICTED: 40S ribosomal protein S13 [Theobroma cacao] >XP_007052073.1 PREDICTED: 40S ribosomal protein S13 [Theobroma cacao] >XP_011090599.1 40S ribosomal protein S13 [Sesamum indicum] >XP_011093360.1 40S ribosomal protein S13 [Sesamum indicum] >XP_012440259.1 PREDICTED: 40S ribosomal protein S13 [Gossypium raimondii] >XP_012475276.1 PREDICTED: 40S ribosomal protein S13 [Gossypium raimondii] >XP_012482991.1 PREDICTED: 40S ribosomal protein S13 [Gossypium raimondii] >XP_016743592.1 40S ribosomal protein S13 [Gossypium hirsutum] >XP_016745661.1 40S ribosomal protein S13 [Gossypium hirsutum] >XP_017623880.1 PREDICTED: 40S ribosomal protein S13-like [Gossypium arboreum] >XP_017627423.1 PREDICTED: 40S ribosomal protein S13-like [Gossypium arboreum] >XP_021280474.1 40S ribosomal protein S13 [Herrania umbratica] >XP_021285749.1 40S ribosomal protein S13 [Herrania umbratica] >XP_022757076.1 40S ribosomal protein S13 [Durio zibethinus] >XP_022757078.1 40S ribosomal protein S13 [Durio zibethinus] >XP_022769679.1 40S ribosomal protein S13 [Durio zibethinus] >XP_039007367.1 40S ribosomal protein S13 [Hibiscus syriacus] >XP_039024810.1 40S ribosomal protein S13 [Hibiscus syriacus] >XP_039034169.1 40S ribosomal protein S13 [Hibiscus syriacus] >XP_039042872.1 40S ribosomal protein S13 [Hibiscus syriacus] >XP_039048158.1 40S ribosomal protein S13 [Hibiscus syriacus] >XP_039060615.1 40S ribosomal protein S13 [Hibiscus syriacus] >KAB2001305.1 hypothetical protein ES319_D12G292400v1 [Gossypium barbadense] >KAG8485108.1 hypothetical protein CXB51_021799 [Gossypium anomalum] >PIN02142.1 40S ribosomal protein S13 [Handroanthus impetiginosus] >TYG43077.1 hypothetical protein ES288_D12G308000v1 [Gossypium darwinii] >TYH63185.1 hypothetical protein ES332_D07G172900v1 [Gossypium tomentosum] >TYI69675.1 hypothetical protein E1A91_D08G169200v1 [Gossypium mustelinum] >GAV78646.1 Ribosomal_S15 domain-containing protein/Ribosomal_S13_N domain-containing protein [Cephalotus follicularis] >GER31237.1 40S ribosomal protein S13 [Striga asiatica])

HSP 1 Score: 298.9 bits (764), Expect = 2.5e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-79
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-76
Identity = 143/151 (94.70%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +SQDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 3.7e-76
Identity = 143/151 (94.70%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGR+HS+GKGIS+SALPY+RT PSWLKISSQDV+E ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.3e-76
Identity = 142/151 (94.04%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 8.8e-70
Identity = 133/151 (88.08%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK ++ DVEE I K AKKG  PSQIGV+LRD HGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct: 121 RIHRLARYYKRTKKLPPTWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. ExPASy TrEMBL
Match: A0A218X097 (40S ribosomal protein S13 OS=Punica granatum OX=22663 GN=LOC116196213 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.4e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. ExPASy TrEMBL
Match: A0A2P5ADI8 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_342800 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.4e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. ExPASy TrEMBL
Match: A0A059CJ48 (Ribosomal_S13_N domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02462 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.4e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. ExPASy TrEMBL
Match: A0A1U8P375 (40S ribosomal protein S13-like OS=Gossypium hirsutum OX=3635 GN=LOC107954576 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. ExPASy TrEMBL
Match: A0A2G9GA89 (40S ribosomal protein S13 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15592 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 286.2 bits (731), Expect = 1.5e-77
Identity = 143/151 (94.70%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +SQDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Spg016057 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 284.3 bits (726), Expect = 5.9e-77
Identity = 142/151 (94.04%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

The following BLAST results are available for this feature:

BLAST of Spg016057 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010053902.1	1.1e-77	100.00	40S ribosomal protein S13 [Eucalyptus grandis] >XP_010066926.1 40S ribosomal pro...	[more]
KAF3433118.1	1.1e-77	100.00	hypothetical protein FNV43_RR24220 [Rhamnella rubrinervis]	[more]
XP_010101741.2	2.5e-77	99.34	40S ribosomal protein S13 [Morus notabilis] >XP_022152725.1 40S ribosomal protei...	[more]
XP_010053901.1	2.5e-77	99.34	40S ribosomal protein S13 [Eucalyptus grandis] >XP_022943482.1 40S ribosomal pro...	[more]
XP_007038446.1	2.5e-77	99.34	PREDICTED: 40S ribosomal protein S13 [Theobroma cacao] >XP_007052073.1 PREDICTED...	[more]

BLAST of Spg016057 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	1.2e-79	98.68	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59224	2.2e-76	94.70	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P46298	3.7e-76	94.70	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59223	8.3e-76	94.04	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
Q69UI1	8.8e-70	88.08	40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of Spg016057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218X097	5.4e-78	100.00	40S ribosomal protein S13 OS=Punica granatum OX=22663 GN=LOC116196213 PE=3 SV=1	[more]
A0A2P5ADI8	5.4e-78	100.00	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_342800 PE=3 SV=...	[more]
A0A059CJ48	5.4e-78	100.00	Ribosomal_S13_N domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGR...	[more]
A0A1U8P375	1.2e-77	99.34	40S ribosomal protein S13-like OS=Gossypium hirsutum OX=3635 GN=LOC107954576 PE=...	[more]
A0A2G9GA89	1.2e-77	99.34	40S ribosomal protein S13 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15592...	[more]

BLAST of Spg016057 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00100.1	1.5e-77	94.70	ribosomal protein S13A	[more]
AT3G60770.1	5.9e-77	94.04	Ribosomal protein S13/S15	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 70..149 e-value: 2.9E-15 score: 66.7
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 74..145 e-value: 4.7E-15 score: 55.5
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 98..128
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 70..143 e-value: 8.90571E-27 score: 94.107
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 1..60 e-value: 5.3E-40 score: 148.9
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 1..60 e-value: 1.3E-31 score: 108.5
None	No IPR available	GENE3D	1.10.287.10		coord: 83..151 e-value: 8.8E-41 score: 140.1
None	No IPR available	GENE3D	4.10.860.130		coord: 35..82 e-value: 3.0E-29 score: 102.5
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 1..151
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 1..151
IPR023029	Ribosomal protein S15P	HAMAP	MF_01343_A	Ribosomal_S15_A	coord: 3..149 score: 32.142063
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 66..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016057.1	Spg016057.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome