Spg015684 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg015684
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold10: 17966024 .. 17971451 (-)
RNA-Seq ExpressionSpg015684
SyntenySpg015684
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAGGTAAAGGTTGAAGGTAGTGTTGGATTATCTATTTGATTGAGTTATGCTATGTCTAATGTTTTGAATTCTGAAGGGAAGGTGAGTTGGTATTGCTCGGGACGCGCAACAGTTCAAGTTTGGGGGTATGATAACTCTCCAAAAGGGAGTTATTCAAGCCTTATTTCTATAGTGTTTTTTGTGTCATTTGTGTTAAATAGGGTTGTTTTTAGATGAATATTATATGTTTTAACCCATTTGGGAAGAATGGATGCTTTGGAAGTTATTTTGTGCAAAATATAATGCGGAGCGACTTGAGGGAGCAAAATCCGTGATCCAGCAAAGCAGGAAGCAAAACTGCCACGTAAGCCGCACGTAATCCATTTAATGAGGTGGCGTTAGCTGAATTAATTTCAGATTTAGGAAGCTTGGAGAGCCTTCCACGTGTAAAGTTTGACCTAATTAGGGTTTGACTCCACTCTATAAAAGGAAGGAGTCGTCTCAAGTCAAAGACACTCCAATTTGGAGAAAGGAAAGTCCTATTTCATTCGTGGAGACTTACTTTCCATCTTTGGGATCCGAATAGAGGAGGAAAGATTGGAGACTTCAAGAAGACCATAGCTACGGATCTAATCAAGGGAATTAATATTTTCTTGTAATTTCTTGTAGTTATGGATGAACATACTCAGATTGTAGCGTGTGTTGTGATGAACCTTATGAACTAAATTTACTTAGGTGTTGGTTAGGAATTATGTAATTGTCGTGTTTCATACTCTATGCAATATATGTTGATTTGAGCATCTTGATTATTTGTTGTGTCCATTTCCATTTTTTGCCCGCCTGGCCAACCGGTATGAATATCACTTCTTAATTTCAAGGATTATTTGAGAAGTGTGTGGCATTTAATCACACTAGACTATTATGTGTTGGTGGACGCTAGTGACTGAGTTAGGGATAACCAGTTGCCTAGTACTTGATCGGTAGCACGTCATTGGAGTTGAAACACATTCCAAAAAATCCAGAATTCTGAGAGGATCCTGCTGATAAGACTACAAGAGAATTGCCTAATTAATATTATTGCTAGAGCATCTTTTAAAACAATTACTAAAATCCTGATCAACGCCTGTTTCCAATCTGTCTACTTTATCCGTTTACTTTCTGTTCTGTCATTTCTTTTGCTTCAGCATTTTATCAAAATCAATCATTTTAATAACCTTGAAACCATTAAAAAGTTACATAAGATAGGTAAAGTGAGAGCTATTCAAAACCTCGTGGATACGATAAATTACTTATCACTTGCTGTGGATTGTGTATGCTTGCACAGTATTCTAGAGCTTATTTTTATCATATTTTTACCCCACTCTAGAAGGCAACACTGGGCAACGTCCCTTGTGGTCTGTTTTTAATTTCATGAGCAATCTGTCCAATTTGTACTTCCAAATTCCTAACTGCGGCATCGTTTCTAGCCATGTACTCTTTCATAAGAGCCTCTAGATTTGACTATTGACTCTGCACTTGGACTGGTTGGAAGTTCTTTTGCGGCTGCTGTTGTGTAGGAGGTTTCCCAAATTGATTTGTATTGGAATTACTTGAGCCGACTTGGGTTGTATGTAGCCGAGTATGGATTCCATCTATTCTAGTTCTGGTTCCCTTGTTGACCTACATAAAAGACAGTCGCGGGATTTAGTGGACAATTATCAACAGTATGTTCCTCACCACAAATTTCACAGCAGGGAGAAGAATAGCATTGGCAGGGGCTATGCTCACTTGATTGCTCATAGTCATGCCCATCATCATGTTGTGGATGACCTTGATTTGGGCTTGCATGGTGGAATTAGCCTCTGTCTCTACTGCCTTAGCTGGATTTTTCAAGATTGTTGTTGGCTCATTTTCTCCCCAATGTCTATTGTTTGTGGCTATGGTATCTAAAATAGCATGTGCCTCACTTGCAGACTTCTTTAAGAAAGATCTGTTTGCAGATGCATTGACTAGTGCCTTCGAAGCTTGATCTAATCCACTATAAAAATGCTCCAAGATGATGCAAGCAGGCAATCCATGGTGTGGACACTTCCGAACCAGCCTTTGAAATCTTTCCCGGGCTGCATCAAGAGGTTCATTATAAGATTGTCTAAATGCAATAATTTCAGCTCTATATTTGGCATTTTTATTAAAAGGAAAAAACTTCTCTAAAAATTTCTCAGCCAAATCATTCCAAGAAGTGATGGAGTTTGGAGGGAATGAGTCCAACCAAGCTTCAGCATCTCCCTGAAAAGAAAATGGAAAAAGCTTTAGCTTCAAAGTATCTTTTAGGCACTCCTGTAACTTTAAAAGAATTGCAAACTCTCAAAAATAGCTTGATGTGTTTATGTGGATCTTCATTTGGAAGTCCAGAGAATTGGCCCATGGTATTCAACATTTGGAACATCACTGGTTTGAGTTCAAATTGTGGAGCATCTATCGGTGGCTCCAAAATTCCTGGATTTAAAGTCTGAAAAACAGGTAAAGCATAGTCCCTTATTGCTCTATTGCGGTCTTCAGTAATGTAAATTGGATTTTCTTGTTGTGGCACGGTGGAACTGGAGGAAGTGGAGGGATTCTTCCACCATTTTGCTCCCTTCCACGATTCTGTGGATCAACTTGAGGATCGATTCCAGGTGGTTCCATTAGAAACTCTTGTATATAAGAAGCTTCTTCTAGAGGTTCTTGTGCGCTCAACTCTTGTTGTTCCCTTTTCTTTCGTCTTTGCTCTTTCCTACGACGACACCAAAAGCCGAAGATTGAAGCCCCGAACCGAGAAGAGACCCAATTGTGCTAAAGCGGGCCTAAATTGTGACACCAAAAGTCGAAGATTGAAGCCCCGAACTGAGAAGAAGCGAGTCAAAACCGAGAAATTGAGTACCAAGTTGGGATATGAGGCATTCGAGCCGAAGTGTAATGTTCGTGGCGTCGAGACGTCAGAGTATTTTCTATATACATGTAGCCTCGGTTTTAGTCCGCCGTTAGGTTAGAATTTTGGTCTCTTTTACGATTTTTTTGCATCTTTTACATTCCAACACTCTTGTAGACCATTCCTTGTCATATTCTATGGATTCTTTTATGTTATTTGTCGCTTTTACTTCATCTATGCATAGCTAAACTCGTTTAGATCGTTGGATTGGATTTATGTCTTGATTCTAAATAATATTGGCTAAGTTTTCTGGTTTATACTTTCTGTTCTTGCTATATTTTCATTGAGTTTTGCATGTTATCCTGTTTAAACCAATACATGAGGCTAGTCAATTAGGATTGACGGCCTATGCGATTACCACTTGTGTATTCTATCAGTTATTTTGAGATAGCCACTAGGTTGAGGCAAGTCACTCTCTATGCGAGACGACCCTTGATAGGCCTAGGATGCATGTTAAAAGTTGTAGGAATTAGATTTAAATTGCATTTGAATTTAGTTCTTGCGATTCTGGACCCACGATCCCAAAGCGGCTAGTTTTAATAGGTGGTTGCAAAATTGCTTGTTAATAAACTAGTTAGATATAAGTAGTAACTGTTGCAGAGGTCTCGGATGGTTGTTACATTATGCATAAGGGGTGGCGAGCGATCGAGTCTATATTAATTAATCTTGTTAATTGCCGAATTCACGATTAGCGAGTTAATTAGCACAGGTTAGTGTAGGGGGGTCCTCCGAGTAACCCAGAAGCCGACCGGACTAATGAAATCAGTTTAGAACGATTATTAGAGAAAACTAGGAAGCCAATGAATTAGAATCAAGCATAATAAATCTCAATCCAATGATAATTTTATGTTATTGATCCCATCTTATTTCTCTTCTACATGTTTATTTTGTGCCAATTAAAATTCTGCATTTAATTATTTAATTTATTTTTGTTTGTCCTTTAATCATAAAAATCCCCCCTGTTTTCAAAAGCACGAAATTCTATAATTGCTAGATCCCCCTTCCCTGTGTTCGACCCCGACCGCTATGGCTACAAAAATAGTAGTAGTGTCGTGGATTATAAATTTTATTTGACGACTTAGGGAGAATTCAACACCCTCCTGCGAGTCAAGTCAAAGGTACTATCCAGATGGCAATTTCCTAAAGGCAAATAAGGGTAATAAGCCATCCTTCACATGGAGAAGCATCCTCTGGGGGCGTTCTCTGTTTGAAAATGGCTTTCGTTGCAGAGTTGGGAATGGCAATAGGATTATTATTGATGAAGACAAGTGGATTCCGGGTCAAATTCCTAGAGCTCCCTCCTTTGTGGTTGATTCGTTCAAAGGCAGAATGCTAAAGATTCTACTTTCTAAGAATGGAGAGTGGAAGGAGGAATCCATTCGTGAGGCTCTTAGTCATGTAGAGGCAGAATGGGTTCTTAACATCCCGAGATGAGGAGTCTCTGAGGTTGACGAAATCATCTGGAACCTTGAGGATAATGGGCTTTTTTCGGTCAAAAGTGTGTATCACTTAGCTACAAGGCTTAATAATAAGGACTACCCTTCTTGCTCAGACGATTCTAAGCTCAAAGCTCTGTGGAATTCGATATGGAACCTCAACTGCTACCCTAGAGCTAAGATCATTGTGTGGAAAGTAATCAAAGTTTACGTTCCTACTCAAGTTAACATCATAAAAAAAGGAGTGGATACTAATTCTTTGTGTGCTCTTTGCAGGTCTAGGGTGGAATCAACTAGCCACGTCTTTTGGCAGTGCAGGTTTGTTAAAAAAAATATGGCACTTCTTCTTCCCTAACTTATTACGATTTTTTAACTCGTATAGGGAAAATTGGACTCTAATGGACTTTTGGGAAGGAATGACTCAAAATCTCAGGACTTAAGACATGTCTAAAGCAGCTATAATCATTTGGTGCATATGGAAGGATAGAAACGAGTGCAATCACAGTGGACAGAGACCAAATTTGGAGAAATCAGTGAAGGTGATCTCCATTATTCATTTAGAGGAAGTGGATGGATCGAGAGAAACTAACCTGAATTCAGTTCAAAGGGAGAGCCTTTCGAGTCATGCGAGATGGAGGCCTCCGGAGGAAAACTTCTAGAAGCTTAATGTCGAGGCTTCTTGGTGTGTGAAGTCAAACACTGGAGGTGTGGGGTGGATTCCTCGTGACTCAAACGAATCTCTGATTGAAGCTGGATGTAAAAGAATTAATCAAAATTGGGAGATTAAAATCCTTGAGGCAAAAGATATCCTCGGGGGCATAGAAGCTTACTTGGAAAACTCTGAAGGTTGGGAGTCCGTGTTTAAGCCCCCGCTGGTGGTTGAATGGGATTCTGCAGCGGTGATCACGACGCTCAACGGAGAGAGGGAAAATCGTTCGAAATTAGCTCTGTTCACCAAATCCATTCTTGAGCTTGCTCATTCTGCTAATGTCGAAAGTTTCTCTAAATGTAATAGAGCCGAAAACTCTGGGGCTCACAATCTTTGCTCGATGGGGAGCTAA

mRNA sequence

ATGCTCAGGGAAGGTGAGTTGGTATTGCTCGGGACGCGCAACAGTTCAAGTTTGGGGTTATTTTGTGCAAAATATAATGCGGAGCGACTTGAGGGAGCAAAATCCGTGATCCAGCAAAGCAGGAAGCAAAACTGCCACGTGGTTCCATTAGAAACTCTTGTATATAAGAAGCTTCTTCTAGAGGTTCTTGTGCGCTCAACTCTTGTTGTTCCCTTTTCTTTCGTCTTTGCTCTTTCCTACGACGACACCAAAAGCCGAAGATTGAAGCCCCGAACCGAGAAGAGACCCAATTGTGCTAAAGCGGGCCTAAATTGTGACACCAAAAGTCGAAGATTGAAGCCCCGAACTGAGAAGAAGCGAGTCAAAACCGAGAAATTGAGTACCAAGTTGGGATATGAGGCATTCGAGCCGAAGTGTAATGTTCGTGGCGTCGAGACGTCAGAGTATTTTCTATATACATGTAGCCTCGGTTTTAGTCCGCCGGAGAATTCAACACCCTCCTGCGAGTCAAGTCAAAGGTACTATCCAGATGGCAATTTCCTAAAGGCAAATAAGGGTAATAAGCCATCCTTCACATGGAGAAGCATCCTCTGGGGGCGTTCTCTGTTTGAAAATGGCTTTCGTTGCAGAGTTGGGAATGGCAATAGGATTATTATTGATGAAGACAAGTGGATTCCGGGTCAAATTCCTAGAGCTCCCTCCTTTGTGGTTGATTCGTTCAAAGGCAGAATGCTAAAGATTCTACTTTCTAAGAATGGAGAGTGGAAGGAGGAATCCATTCGTGAGGCTCTTAGTCATGTAGAGGCAGAATGGACGATTCTAAGCTCAAAGCTCTGTGGAATTCGATATGGAACCTCAACTGCTACCCTAGAGCTAAGATCATTGTGTGGAAAGTCTAGGGTGGAATCAACTAGCCACGTCTTTTGGCAGTGCAGAAACGAGTGCAATCACAGTGGACAGAGACCAAATTTGGAGAAATCAGTGAAGAAGCTTAATGTCGAGGCTTCTTGGTGTGTGAAGTCAAACACTGGAGGTGTGGGGTGGATTCCTCGTGACTCAAACGAATCTCTGATTGAAGCTGGATGTAAAAGAATTAATCAAAATTGGGAGATTAAAATCCTTGAGGCAAAAGATATCCTCGGGGGCATAGAAGCTTACTTGGAAAACTCTGAAGGTTGGGAGTCCGTGTTTAAGCCCCCGCTGGTGGTTGAATGGGATTCTGCAGCGGTGATCACGACGCTCAACGGAGAGAGGGAAAATCGTTCGAAATTAGCTCTGTTCACCAAATCCATTCTTGAGCTTGCTCATTCTGCTAATGTCGAAAGTTTCTCTAAATGTAATAGAGCCGAAAACTCTGGGGCTCACAATCTTTGCTCGATGGGGAGCTAA

Coding sequence (CDS)

ATGCTCAGGGAAGGTGAGTTGGTATTGCTCGGGACGCGCAACAGTTCAAGTTTGGGGTTATTTTGTGCAAAATATAATGCGGAGCGACTTGAGGGAGCAAAATCCGTGATCCAGCAAAGCAGGAAGCAAAACTGCCACGTGGTTCCATTAGAAACTCTTGTATATAAGAAGCTTCTTCTAGAGGTTCTTGTGCGCTCAACTCTTGTTGTTCCCTTTTCTTTCGTCTTTGCTCTTTCCTACGACGACACCAAAAGCCGAAGATTGAAGCCCCGAACCGAGAAGAGACCCAATTGTGCTAAAGCGGGCCTAAATTGTGACACCAAAAGTCGAAGATTGAAGCCCCGAACTGAGAAGAAGCGAGTCAAAACCGAGAAATTGAGTACCAAGTTGGGATATGAGGCATTCGAGCCGAAGTGTAATGTTCGTGGCGTCGAGACGTCAGAGTATTTTCTATATACATGTAGCCTCGGTTTTAGTCCGCCGGAGAATTCAACACCCTCCTGCGAGTCAAGTCAAAGGTACTATCCAGATGGCAATTTCCTAAAGGCAAATAAGGGTAATAAGCCATCCTTCACATGGAGAAGCATCCTCTGGGGGCGTTCTCTGTTTGAAAATGGCTTTCGTTGCAGAGTTGGGAATGGCAATAGGATTATTATTGATGAAGACAAGTGGATTCCGGGTCAAATTCCTAGAGCTCCCTCCTTTGTGGTTGATTCGTTCAAAGGCAGAATGCTAAAGATTCTACTTTCTAAGAATGGAGAGTGGAAGGAGGAATCCATTCGTGAGGCTCTTAGTCATGTAGAGGCAGAATGGACGATTCTAAGCTCAAAGCTCTGTGGAATTCGATATGGAACCTCAACTGCTACCCTAGAGCTAAGATCATTGTGTGGAAAGTCTAGGGTGGAATCAACTAGCCACGTCTTTTGGCAGTGCAGAAACGAGTGCAATCACAGTGGACAGAGACCAAATTTGGAGAAATCAGTGAAGAAGCTTAATGTCGAGGCTTCTTGGTGTGTGAAGTCAAACACTGGAGGTGTGGGGTGGATTCCTCGTGACTCAAACGAATCTCTGATTGAAGCTGGATGTAAAAGAATTAATCAAAATTGGGAGATTAAAATCCTTGAGGCAAAAGATATCCTCGGGGGCATAGAAGCTTACTTGGAAAACTCTGAAGGTTGGGAGTCCGTGTTTAAGCCCCCGCTGGTGGTTGAATGGGATTCTGCAGCGGTGATCACGACGCTCAACGGAGAGAGGGAAAATCGTTCGAAATTAGCTCTGTTCACCAAATCCATTCTTGAGCTTGCTCATTCTGCTAATGTCGAAAGTTTCTCTAAATGTAATAGAGCCGAAAACTCTGGGGCTCACAATCTTTGCTCGATGGGGAGCTAA

Protein sequence

MLREGELVLLGTRNSSSLGLFCAKYNAERLEGAKSVIQQSRKQNCHVVPLETLVYKKLLLEVLVRSTLVVPFSFVFALSYDDTKSRRLKPRTEKRPNCAKAGLNCDTKSRRLKPRTEKKRVKTEKLSTKLGYEAFEPKCNVRGVETSEYFLYTCSLGFSPPENSTPSCESSQRYYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDEDKWIPGQIPRAPSFVVDSFKGRMLKILLSKNGEWKEESIREALSHVEAEWTILSSKLCGIRYGTSTATLELRSLCGKSRVESTSHVFWQCRNECNHSGQRPNLEKSVKKLNVEASWCVKSNTGGVGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAYLENSEGWESVFKPPLVVEWDSAAVITTLNGERENRSKLALFTKSILELAHSANVESFSKCNRAENSGAHNLCSMGS
Homology
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BLAST of Spg015684 vs. NCBI nr
Match: XP_022145149.1 (uncharacterized protein LOC111014663 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 6.3e-15
Identity = 44/98 (44.90%), Postives = 56/98 (57.14%), Query Frame = 0 

Query: 173 RYYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDEDKWIPGQIPRA 232
           +Y+  G+FLKA  GN PS+ WRSILW R LFE G++ RVGNG  I I  D WI    P  
Sbjct: 177 KYFRTGSFLKAKLGNSPSYAWRSILWERELFEKGYQWRVGNGYSISIGLDSWIHRDSPYR 236

Query: 233 PSFVVDSFKGRMLKILLSKNGEWKEESIREALSHVEAE 271
           P F   S    ++  L+++ G W E  IR+     EAE
Sbjct: 237 PVFTPSSIFEHLVAWLMTERGRWNEHKIRDNFIISEAE 274

[Close]
BLAST of Spg015684 vs. NCBI nr
Match: KAG5522019.1 (hypothetical protein RHGRI_034285 [Rhododendron griersonianum])

HSP 1 Score: 87.0 bits (214), Expect = 4.5e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 171 SQRYYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDEDKWIPGQIP 230
           + +Y+P G+FL A  G+ PS+TWRSIL GR + E G R R+G+G+++IIDE  W+P   P
Sbjct: 44  ANKYFPVGSFLSAKSGSNPSWTWRSILEGRKVLETGLRWRIGSGSKVIIDEHPWLPKSEP 103

Query: 231 RAPSFVVDSFKGRMLKILL 250
             P  V +  KGR +  L+
Sbjct: 104 VVPHSVREDIKGRRVSFLI 122

[Close]
BLAST of Spg015684 vs. NCBI nr
Match: XP_042972884.1 (uncharacterized protein LOC122304684 [Carya illinoinensis])

HSP 1 Score: 86.7 bits (213), Expect = 5.9e-13
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 0 

Query: 163 NSTPSCESSQRYYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDED 222
           NS  SC   Q+YYP GN LKA  G+ PS+ WRS++ G S+ ++G R RVGNGN I +  D
Sbjct: 463 NSLASCVMKQKYYPTGNLLKAKLGSSPSYVWRSMMAGLSILKSGLRWRVGNGNSINLWSD 522

Query: 223 KWIPGQIPRAPSFV--VDSFKGRMLKILLSKNGEWKEESIRE 263
           KWIP   P   +    VD +  R+  ++  +   WK+E + E
Sbjct: 523 KWIPSLPPFTVTSPRDVDCWCERVSDLIDPRQRSWKKELLVE 564

[Close]
BLAST of Spg015684 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 2.9e-12
Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 0 

Query: 173 RYYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDEDKWIPGQIPRA 232
           +Y+  G+FL+A  G +PS+ WRSILWGR LF+ G+R +VGNG  I +  D W+P     +
Sbjct: 553 KYFKTGSFLQAKLGARPSYAWRSILWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNFS 612

Query: 233 PSFVVDSFKGRMLKILLSKNGEWKEESIREALSHVEAE 271
           P F     +   +  L+   G W E  +RE+    EA+
Sbjct: 613 PVFTHIHVRNFSVAWLMEGRGRWDEIKVRESFIVSEAD 650

[Close]
BLAST of Spg015684 vs. NCBI nr
Match: CAA7056903.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 83.6 bits (205), Expect = 5.0e-12
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 0 

Query: 158 FSPPENSTPSCESSQRYYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRI 217
           F    NS  +     RY+P  +FL A  G++PS+ WRSI+WGR L E G R RVGNG+ +
Sbjct: 454 FLQDPNSLVARLLKSRYFPKSSFLSAIVGSRPSYAWRSIVWGRELLEKGIRKRVGNGSTV 513

Query: 218 IIDEDKWIPGQIPRAPSFVVDSFKGRML--KILLSKNGEWKEESIREALSHVEAE 271
            +  DKWI   I R P  +V  F   +L  +++  ++  W E  +RE     + E
Sbjct: 514 SVWTDKWIMDGILRPPWRMVFPFNVNLLARELINPQSRRWDERKLRETFFPEDVE 568

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BLAST of Spg015684 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-06
Identity = 21/61 (34.43%), Postives = 34/61 (55.74%), Query Frame = 0 

Query: 173 RYYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDEDKWIPGQIPRA 232
           RY+P  + ++ + G +PS+ WRSI+ GR L   G    +G+G    +  D+WI  + P  
Sbjct: 92  RYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDETPLP 151

Query: 233 P 234
           P
Sbjct: 152 P 152

[Close]
BLAST of Spg015684 vs. ExPASy TrEMBL
Match: A0A6J1CUD6 (uncharacterized protein LOC111014663 OS=Momordica charantia OX=3673 GN=LOC111014663 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-15
Identity = 44/98 (44.90%), Postives = 56/98 (57.14%), Query Frame = 0 

Query: 173 RYYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDEDKWIPGQIPRA 232
           +Y+  G+FLKA  GN PS+ WRSILW R LFE G++ RVGNG  I I  D WI    P  
Sbjct: 177 KYFRTGSFLKAKLGNSPSYAWRSILWERELFEKGYQWRVGNGYSISIGLDSWIHRDSPYR 236

Query: 233 PSFVVDSFKGRMLKILLSKNGEWKEESIREALSHVEAE 271
           P F   S    ++  L+++ G W E  IR+     EAE
Sbjct: 237 PVFTPSSIFEHLVAWLMTERGRWNEHKIRDNFIISEAE 274

[Close]
BLAST of Spg015684 vs. ExPASy TrEMBL
Match: A0A803P8L6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.6e-14
Identity = 75/295 (25.42%), Postives = 128/295 (43.39%), Query Frame = 0 

Query: 174 YYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDEDKWIPGQIPRAP 233
           Y+P+ NFL+A  G+  S  WR I+WGR L   G+R  +GNG  I I+ED W+P   P A 
Sbjct: 670 YFPNNNFLEAKVGHYGSHIWRGIVWGRELLLKGYRWHIGNGLTIRINEDPWLPRGAPFAL 729

Query: 234 SFVVDSFKGRMLKILLSKNGEWKEESIREALSHVEAEWTILSSKLCGIRYGTSTATLELR 293
              V+  +G  +  LL+ +G WK + +     H +  W +      GI        +   
Sbjct: 730 RSKVNVPEGVTIHTLLNHDGSWKCDELTGWFHHEDIPWVL------GINPNREREDIIGW 789

Query: 294 SLC--GKSRVESTSHV-FWQCRNECNHSGQRPNLEKS----------VKKLNVEASWCVK 353
           S    G+  V S   + F   + + + +   P+++KS             +N +AS  V 
Sbjct: 790 SFTPNGQYTVASGYKLRFSHLQLQTDSTPPLPSMKKSPVSWSPPPSGTFMINTDASLVVG 849

Query: 354 SNTGGVGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAYLENSEGWESVFKPP 413
               G+G + RD   +++ A    I     + + E+  I  G    L+ ++ W       
Sbjct: 850 QPGCGLGMVIRDHLGAVVVAETIFIPGCLSVNMAESLAIRSG----LKLADCWS---LSN 909

Query: 414 LVVEWDSAAVITTLNGERENRSKLALFTKSILELAHSANVESF----SKCNRAEN 452
           + +  D  +V   LNG+  + +   L  K  ++   + N+ SF     +CN+  N
Sbjct: 910 ICISSDCQSVSHALNGDNHSITDWGLMVKDCIKAKENFNLVSFLFSPRQCNKVAN 951

[Close]
BLAST of Spg015684 vs. ExPASy TrEMBL
Match: A0A803NYQ1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.6e-14
Identity = 84/322 (26.09%), Postives = 137/322 (42.55%), Query Frame = 0 

Query: 163  NSTPSCESSQRYYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDED 222
            NS  S     RY+P  +FL+A+ G+ P  TW+ ILWGR L ++G R ++G G  ++   D
Sbjct: 1029 NSLLSQLFKSRYHPHNSFLEAHHGHSPFLTWQGILWGRELLQSGLRWKIGEGRSVLCGSD 1088

Query: 223  KWIPGQIPRAPSFVVDSFKG---RMLKILLSKNGEWKEESIREALSHVEAE--------- 282
             WIPG      SF   S++G    ++  L+++N EW    ++   S ++ +         
Sbjct: 1089 PWIPGH----SSFQPISYRGPANGVVANLITENREWDLPLLQSYFSVIDVDRIMTIPLSY 1148

Query: 283  --------WTILSSKLCGIRYG-TSTATLELRSLCGKSRVESTSHVFWQCRNECNHSGQR 342
                    W   ++    ++ G    A++E  S      V +T   +WQ     N   ++
Sbjct: 1149 FPTSDHLIWHHTNNGFFSVKSGYHKAASIEEAS---SPSVSATKSTWWQYFWSLNLPPKK 1208

Query: 343  PNLEKSVKKLNVEASWCVKSNTGGVGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILG 402
            P    S  KLNV+A+     +  GVG I RD    ++ A  K I  N+    +EAK +  
Sbjct: 1209 PPRSGSF-KLNVDATLNASQHIIGVGAIVRDVAGFVVAALSKPIVGNFASHEMEAKALFH 1268

Query: 403  GIEAYLENSEGWESVFKPPLVVEWDSAAVITTLNGERENRSKLALFTKSILELAHSANVE 458
             +   L+     +        +E D+  V   LN      +    F   IL++   +++ 
Sbjct: 1269 SLTWLLQMQISID-------YIETDALMVSNALNNP---AAAFTAFDDLILDI---SSLL 1328

[Close]
BLAST of Spg015684 vs. ExPASy TrEMBL
Match: A0A803PY66 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-13
Identity = 68/229 (29.69%), Postives = 100/229 (43.67%), Query Frame = 0 

Query: 174 YYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDEDKWIPGQIPRAP 233
           Y+ + +F+ ANKGN  S TW+ I WGR L   G R  VGNG RI+   D WIPG     P
Sbjct: 41  YFLNDDFVPANKGNNSSLTWQGICWGRGLLVKGLRMNVGNGRRILCCSDPWIPGHSIFTP 100

Query: 234 SFVVDSFKGRMLKILLSKNGEWKEESIREALSHVEAE--WTILSSKLCGIRYGTSTATLE 293
           ++       +++   +S + EW  +S++   S V+ +   TI  S      Y     T+ 
Sbjct: 101 AYYTGLPLNKVVD-YISSDHEWNLQSLQRDFSAVDIDNILTIPYSNSAPDDYWVWNYTIH 160

Query: 294 LRSLCGKSRVESTSHVFWQCRNECNHSG-----------------------QRPNLEKSV 353
                GK  V+S  H      N+ +HS                        Q P L +  
Sbjct: 161 -----GKYTVQSRYHFACSLENQ-DHSSTSDSTSSWWTRNSNSSVAPHQPWQAPPLSR-- 220

Query: 354 KKLNVEASWCVKSNTGGVGWIPRDSNESLIEAGCKRINQNWEIKILEAK 378
            K+NV+A+     N  G G I RDS   +I A  + +  N++   +EAK
Sbjct: 221 LKMNVDAAVSSSCNKSGFGAIIRDSIGHVIAALSEPMAGNYKAHEMEAK 260

[Close]
BLAST of Spg015684 vs. ExPASy TrEMBL
Match: A0A6J1DRA0 (uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022423 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-12
Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 0 

Query: 173 RYYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDEDKWIPGQIPRA 232
           +Y+  G+FL+A  G +PS+ WRSILWGR LF+ G+R +VGNG  I +  D W+P     +
Sbjct: 553 KYFKTGSFLQAKLGARPSYAWRSILWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNFS 612

Query: 233 PSFVVDSFKGRMLKILLSKNGEWKEESIREALSHVEAE 271
           P F     +   +  L+   G W E  +RE+    EA+
Sbjct: 613 PVFTHIHVRNFSVAWLMEGRGRWDEIKVRESFIVSEAD 650

[Close]
BLAST of Spg015684 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-07
Identity = 21/61 (34.43%), Postives = 34/61 (55.74%), Query Frame = 0 

Query: 173 RYYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDEDKWIPGQIPRA 232
           RY+P  + ++ + G +PS+ WRSI+ GR L   G    +G+G    +  D+WI  + P  
Sbjct: 92  RYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDETPLP 151

Query: 233 P 234
           P
Sbjct: 152 P 152

[Close]
BLAST of Spg015684 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-06
Identity = 34/106 (32.08%), Postives = 52/106 (49.06%), Query Frame = 0 

Query: 173 RYYPDGNFLKANKGNKPSFTWRSILWGRSLFENGFRCRVGNGNRIIIDEDKWIPG----- 232
           RY+   + L A  G++PSF W+SI   + +   G R  VGNG  III   KW+       
Sbjct: 91  RYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASA 150

Query: 233 --QIPRAPSFVVDSFKGRMLKI--LLSKNG-EWKEESIREALSHVE 269
             ++ R P     S    +LK+  L+ ++G EW+++ I      VE
Sbjct: 151 ALRMQRVPPQEYASVSS-ILKVSDLIDESGREWRKDVIEMLFPEVE 195

The following BLAST results are available for this feature:
BLAST of Spg015684 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145149.16.3e-1544.90uncharacterized protein LOC111014663 [Momordica charantia][more]
KAG5522019.14.5e-1345.57hypothetical protein RHGRI_034285 [Rhododendron griersonianum][more]
XP_042972884.15.9e-1342.16uncharacterized protein LOC122304684 [Carya illinoinensis][more]
XP_022155286.12.9e-1238.78uncharacterized protein LOC111022423 [Momordica charantia][more]
CAA7056903.15.0e-1237.39unnamed protein product [Microthlaspi erraticum][more]
BLAST of Spg015684 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P932953.3e-0634.43Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Spg015684 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CUD63.0e-1544.90uncharacterized protein LOC111014663 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A803P8L62.6e-1425.42Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NYQ12.6e-1426.09Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PY661.7e-1329.69Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6J1DRA01.4e-1238.78uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
BLAST of Spg015684 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00310.12.3e-0734.43RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT4G29090.11.5e-0632.08Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 332..461
e-value: 5.9E-15
score: 55.2
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 324..461

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg015684.1Spg015684.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity