Spg015588 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg015588
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold10: 14161538 .. 14164563 (+)
RNA-Seq ExpressionSpg015588
SyntenySpg015588
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACACTCCCAAATTCGAAATCCCTCGCAAGATTACTCGATCTTTGAGTAATAGAAGTGCCCAAAGAGCTGAACAAAGTGCTCGACTGATGTGGACTTTTCCTACCGCAAGCGCACGGGTTAAGTAATAATATAATGATTGTGAAATCGAATGTCCCCCTCTGGATTGGATTTTTAAGTTAAATTAAGTACCATGAATATTCTTGCTCAATTTTATTTAGGGACCGAAAAGTAGTGAGTTTTGGAAACAAAGGTGTTGCAAATTAAAGATGTGAAATTCAATTGAAAGAATACTTAGGGAATTGATTTCGTCAGTTTAGTTTAGGATTGATTTTAGGGAATGAATTATAACGCACAATTATTCTAGGAGTCTAAGAACCTTTAATCACAACTACCTCTCCCGAGCATAATTGATTTTCATGCATCTAACTAACTTGATATCCCTATCTAAGTTCATTAACATGCAAGGCTTTTAGTTCTTTTGACCAATTCTAAAGTTATTCTAAATTACGTCACGATCTTAGAATTTCTACTTTAGTCATGCAATCTTAAGCAAGTCTACGCTAAATCCCCTCTCCCAAGCAAGATTCAACACTTAGATCATTCAACTAGTGGCCAATTAATTGAAAGCATATTAAGATTGCAAATATAAAACAATTACACAATTCATGCCATAAATCAATCCATAAACTTAAAAGACTACACCAATCCCTTAGTAACAAGCTTGGCTACTCATACATGGCGTTACAAGATAAACTAAGCATGAAAAAACCATTAAATCTAACTAAAGATAAGGGAAATGAAGGAAAACGCTAGAAGTCGTCGAAACCAGCACGTCCCCGTCACGATCTCCACGCCTCCAAGCTAGGTTCTCGCTCCTTGGCCTTGCTTCAACTCCCCCAGAAGGTCTCTAGTCGAAATTAGGGCTAAAATCTCTCAAATTGAACTCCCCTTTTCCGTAGCACAAAAAGATGAATATATAGGAAATCTACCGACAGAGTCGAGACGCTATGGACAGCGTCGCGACGCTGTCGCCTGCACCGCCAAAATAGAATGGGAAAGTTGCACAGCGTCGAGACGCTGTCTCTGTTGCAGCCCAAACCACATAAGGAAACTTTGAAGCGTCGAGACGCCACAAGGCTAGCGTCTCGATGCCAGCTCTCGGCCAAGCCCACTTGGTTAAGTCTTCCACATGATTCCTCTTTTCTTCTTTGGCTCCTTTTGGCGTCTCGAACACTAAATCAATTCCAATTTCCTACAAAATAAACATTAAAGTGCAATAAAATGGCTACGAATTACTCAAAGGCTAACTAAAATAAATAGGGAAAAATAGCTAGCTATGCTTCTACTCCTTCATCCTCGACAATGTCGGCTGTTACAAGAGAGAATCGAAGTGGTTCTCGACACAAGAAGGCCACGCCCACCCATTCTCTCCACCAAACTCAAAAACCCGTGGGAAAACCTCTTAGGAAACGCTCCAAGGAATGGTTTGCCATGATTCATGAGATGGGAGCTAAGAGACGTACGACTATTGAGGAAGAAGCACGGTTGCGTGAAGCTGAAGACTTATTCCCTAAAGTAGGGGAGAGCTCTCGGCAAGGGAAAGCTTCAACGGGTAAAACTTCTAACCCTTCAACATTATTCTTTACACAGGGACAAGCCCTTTGTGACTTACAATGCCAAGAAGAAAGATTCCAGGAAACCTGAACATGAGAAGCCCCTGATCATTGAGCCTCTTAAAACGGCAAGGATGCCAGCGGACGTGTTTGAAGACATGATTTGACAGGCTGTTGCACGGGCCCTTGTAATCGCTGAAGGTTATAGGGCTAAGCAAGATGCACTCGAGGAGATAAAGGCTGAAAAAGAAAGGGAACTTCAGAGTATGATGGATGAAGATGAGTTAGCAAGAAAAAGAGACTTGGAGGATGAAAAGAAAAGGGAGGAAGCTGAGAAAAAGAAAGAAGAAGAAAAACAAGAGGCCGAGAGGGCCATTCAAGCTGAAAAAGAAAGAAAATAAGATGAGGAATTGAGGAGGTTGGCTGCTGAACTCCGACTCCTTGAGGAAGAAAAGGACAGAAGAAAGATTCTTCAAGAAGAAGAAAAACGAAGAAAAGAGGTTGAGGATTTTCTTGCAGCCTTTGAGCCACTGCATAATGCTCAAAAGAAAGTTGAACAACTGCAAGAAGTTGAAGAAGATGCCTTTGAAGGGCCTGGAAAAGAAGAAGACAGTGAAGGCCAGAATGCGACCTCATTTGGGTCGCATTCTGAGGAAGGCCAAGCTAAAGTCGTGTATGAGCAGCAAGCTGATGAGCCCCTTGACCATTTGTTCGAGTATGACATTAGGGGACCTTCACTAGTTGCTGAAAGTACATCTTCAAAAGAGAAAAAGGATGAAGAGAAAATTGAAGAAAAAGAGGTCGAGACCTCTAGTGACAGTAAGACCGAAACATATTCTGAAATTGAGGAATTGGACGATGACCAAATTCCAATTTCTACTGCTTTGAGGAAGAAGAGAAGAAGAGAACTTAGGGCCGAGAGGAGGACCAAGAACAAGAATGACCCCATATTTGCTAAGAGGTCGAGGACAAGGTCCATGGACGCCTCTCCAATGCCTCCTAGAACCACCACACCCGTCAAGCCAAAGGTTAAATCGCCTAAAGCTCCATCACCAAAGAATCCATTCCCTGAGGTCTTCATTGATGTAAATTTCCAAGAAAAGATGGAGATTATGAGAAAAAGGGACTTCTTGAACGAGAAAGGATTCTCAAACAGAGCAGGGACATTGCCAGACTTCGTGACAAAAGTTATTACTCATTATAAATGGCAAGAGTTCTGCGTTCACCCTCAAGAGGTCGTAGTGCCTCTAGTTCGAGAGTTCTATGTTCGATTGAGGGAGGAAAGTATGAGCATGGCGGTGGTAAGAGGGAAAATGGTAAATTTCGCTTCGGTTGACATTAACAGGGTATATCAGATCAAAGCTCCTTTGCATCTGAGAGGGAATGATGCCATTAAGAAGCTTTAA

mRNA sequence

ATGAAGAACACTCCCAAATTCGAAATCCCTCGCAAGATTACTCGATCTTTGAGTAATAGAAGTGCCCAAAGAGCTGAACAAAGTGCTCGACTGATGTGGACTTTTCCTACCGCAAGCGCACGGGTTAAGAAATCTACCGACAGAGTCGAGACGCTATGGACAGCGTCGCGACGCTGTCGCCTGCACCGCCAAAATAGAATGGGAAAGTTGCACAGCGTCGAGACGCTGTCTCTGTTGCAGCCCAAACCACATAAGGAAACTTTGAAGCGTCGAGACGCCACAAGGCTAGCGTCTCGATGCCAGCTCTCGGCCAAGCCCACTTGCTATGCTTCTACTCCTTCATCCTCGACAATGTCGGCTGTTACAAGAGAGAATCGAAGTGGTTCTCGACACAAGAAGGCCACGCCCACCCATTCTCTCCACCAAACTCAAAAACCCGTGGGAAAACCTCTTAGGAAACGCTCCAAGGAATGGTTTGCCATGATTCATGAGATGGGAGCTAAGAGACGTACGACTATTGAGGAAGAAGCACGGTTGCGTGAAGCTGAAGACTTATTCCCTAAAGCTGTTGCACGGGCCCTTGTAATCGCTGAAGGTTATAGGGCTAAGCAAGATGCACTCGAGGAGATAAAGGCTGAAAAAGAAAGGGAACTTCAGAATGAGGAATTGAGGAGGTTGGCTGCTGAACTCCGACTCCTTGAGGAAGAAAAGGACAGAAGAAAGATTCTTCAAGAAGAAGAAAAACGAAGAAAAGAGGTTGAGGATTTTCTTGCAGCCTTTGAGCCACTGCATAATGCTCAAAAGAAAGTTGAACAACTGCAAGAAGTTGAAGAAGATGCCTTTGAAGGGCCTGGAAAAGAAGAAGACAGTGAAGGCCAGAATGCGACCTCATTTGGGTCGCATTCTGAGGAAGGCCAAGCTAAAGTCGTGTATGAGCAGCAAGCTGATGAGCCCCTTGACCATTTGTTCGAGTATGACATTAGGGGACCTTCACTAGTTGCTGAAAGTACATCTTCAAAAGAGAAAAAGGATGAAGAGAAAATTGAAGAAAAAGAGGTCGAGACCTCTAGTGACAGTAAGACCGAAACATATTCTGAAATTGAGGAATTGGACGATGACCAAATTCCAATTTCTACTGCTTTGAGGAAGAAGAGAAGAAGAGAACTTAGGGCCGAGAGGAGGACCAAGAACAAGAATGACCCCATATTTGCTAAGAGGTCGAGGACAAGGTCCATGGACGCCTCTCCAATGCCTCCTAGAACCACCACACCCGTCAAGCCAAAGGTTAAATCGCCTAAAGCTCCATCACCAAAGAATCCATTCCCTGAGGTCTTCATTGATGTAAATTTCCAAGAAAAGATGGAGATTATGAGAAAAAGGGACTTCTTGAACGAGAAAGGATTCTCAAACAGAGCAGGGACATTGCCAGACTTCGTGACAAAAGTTATTACTCATTATAAATGGCAAGAGTTCTGCGTTCACCCTCAAGAGGTCGTAGTGCCTCTAGTTCGAGAGTTCTATGTTCGATTGAGGGAGGAAAGTATGAGCATGGCGGTGGTAAGAGGGAAAATGGTAAATTTCGCTTCGGTTGACATTAACAGGGTATATCAGATCAAAGCTCCTTTGCATCTGAGAGGGAATGATGCCATTAAGAAGCTTTAA

Coding sequence (CDS)

ATGAAGAACACTCCCAAATTCGAAATCCCTCGCAAGATTACTCGATCTTTGAGTAATAGAAGTGCCCAAAGAGCTGAACAAAGTGCTCGACTGATGTGGACTTTTCCTACCGCAAGCGCACGGGTTAAGAAATCTACCGACAGAGTCGAGACGCTATGGACAGCGTCGCGACGCTGTCGCCTGCACCGCCAAAATAGAATGGGAAAGTTGCACAGCGTCGAGACGCTGTCTCTGTTGCAGCCCAAACCACATAAGGAAACTTTGAAGCGTCGAGACGCCACAAGGCTAGCGTCTCGATGCCAGCTCTCGGCCAAGCCCACTTGCTATGCTTCTACTCCTTCATCCTCGACAATGTCGGCTGTTACAAGAGAGAATCGAAGTGGTTCTCGACACAAGAAGGCCACGCCCACCCATTCTCTCCACCAAACTCAAAAACCCGTGGGAAAACCTCTTAGGAAACGCTCCAAGGAATGGTTTGCCATGATTCATGAGATGGGAGCTAAGAGACGTACGACTATTGAGGAAGAAGCACGGTTGCGTGAAGCTGAAGACTTATTCCCTAAAGCTGTTGCACGGGCCCTTGTAATCGCTGAAGGTTATAGGGCTAAGCAAGATGCACTCGAGGAGATAAAGGCTGAAAAAGAAAGGGAACTTCAGAATGAGGAATTGAGGAGGTTGGCTGCTGAACTCCGACTCCTTGAGGAAGAAAAGGACAGAAGAAAGATTCTTCAAGAAGAAGAAAAACGAAGAAAAGAGGTTGAGGATTTTCTTGCAGCCTTTGAGCCACTGCATAATGCTCAAAAGAAAGTTGAACAACTGCAAGAAGTTGAAGAAGATGCCTTTGAAGGGCCTGGAAAAGAAGAAGACAGTGAAGGCCAGAATGCGACCTCATTTGGGTCGCATTCTGAGGAAGGCCAAGCTAAAGTCGTGTATGAGCAGCAAGCTGATGAGCCCCTTGACCATTTGTTCGAGTATGACATTAGGGGACCTTCACTAGTTGCTGAAAGTACATCTTCAAAAGAGAAAAAGGATGAAGAGAAAATTGAAGAAAAAGAGGTCGAGACCTCTAGTGACAGTAAGACCGAAACATATTCTGAAATTGAGGAATTGGACGATGACCAAATTCCAATTTCTACTGCTTTGAGGAAGAAGAGAAGAAGAGAACTTAGGGCCGAGAGGAGGACCAAGAACAAGAATGACCCCATATTTGCTAAGAGGTCGAGGACAAGGTCCATGGACGCCTCTCCAATGCCTCCTAGAACCACCACACCCGTCAAGCCAAAGGTTAAATCGCCTAAAGCTCCATCACCAAAGAATCCATTCCCTGAGGTCTTCATTGATGTAAATTTCCAAGAAAAGATGGAGATTATGAGAAAAAGGGACTTCTTGAACGAGAAAGGATTCTCAAACAGAGCAGGGACATTGCCAGACTTCGTGACAAAAGTTATTACTCATTATAAATGGCAAGAGTTCTGCGTTCACCCTCAAGAGGTCGTAGTGCCTCTAGTTCGAGAGTTCTATGTTCGATTGAGGGAGGAAAGTATGAGCATGGCGGTGGTAAGAGGGAAAATGGTAAATTTCGCTTCGGTTGACATTAACAGGGTATATCAGATCAAAGCTCCTTTGCATCTGAGAGGGAATGATGCCATTAAGAAGCTTTAA

Protein sequence

MKNTPKFEIPRKITRSLSNRSAQRAEQSARLMWTFPTASARVKKSTDRVETLWTASRRCRLHRQNRMGKLHSVETLSLLQPKPHKETLKRRDATRLASRCQLSAKPTCYASTPSSSTMSAVTRENRSGSRHKKATPTHSLHQTQKPVGKPLRKRSKEWFAMIHEMGAKRRTTIEEEARLREAEDLFPKAVARALVIAEGYRAKQDALEEIKAEKERELQNEELRRLAAELRLLEEEKDRRKILQEEEKRRKEVEDFLAAFEPLHNAQKKVEQLQEVEEDAFEGPGKEEDSEGQNATSFGSHSEEGQAKVVYEQQADEPLDHLFEYDIRGPSLVAESTSSKEKKDEEKIEEKEVETSSDSKTETYSEIEELDDDQIPISTALRKKRRRELRAERRTKNKNDPIFAKRSRTRSMDASPMPPRTTTPVKPKVKSPKAPSPKNPFPEVFIDVNFQEKMEIMRKRDFLNEKGFSNRAGTLPDFVTKVITHYKWQEFCVHPQEVVVPLVREFYVRLREESMSMAVVRGKMVNFASVDINRVYQIKAPLHLRGNDAIKKL
Homology
[Close]
BLAST of Spg015588 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-07
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 457 MRKRDFLNEKGF----SNRAGTLPDFVTKVITHYKWQEFCVHPQEVVVPLVREFYVRLRE 516
           ++ R    EKGF    S   G LP F+ +VIT + W++FC HP++ +VPLVREFY  L +
Sbjct: 38  IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 97

Query: 517 ESMSMAVVRGKMVNFASVDINRVYQIKAPL 543
              +   VRG  V+++   IN V+ +  P+
Sbjct: 98  PEENTVYVRGVQVSWSEEAINAVFGLGDPV 126

[Close]
BLAST of Spg015588 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 68.2 bits (165), Expect = 2.6e-07
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 457 MRKRDFLNEKGF----SNRAGTLPDFVTKVITHYKWQEFCVHPQEVVVPLVREFYVRLRE 516
           ++ R    EKGF    S   G LP F+ +VIT + W++FC HP++ +VPLVREFY  L +
Sbjct: 29  IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 88

Query: 517 ESMSMAVVRGKMVNFASVDINRVYQIKAPL 543
              +   VRG  V+++   IN V+ +  P+
Sbjct: 89  PVENTVYVRGVQVSWSEEAINAVFGLGDPV 117

The following BLAST results are available for this feature:
BLAST of Spg015588 vs. NCBI nr
Match NameE-valueIdentityDescription
PON46472.11.5e-0738.89hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON35554.12.6e-0738.89hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
BLAST of Spg015588 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg015588 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg015588 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 197..253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..438
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 420..438
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 393..407

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg015588.1Spg015588.1mRNA