Spg015460 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015460
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Location	scaffold10: 15562077 .. 15566781 (-)
RNA-Seq Expression	Spg015460
Synteny	Spg015460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGACTTTGGTCGCACTCCCAACAATCCTCCCCTCGAACAAAGTACCACCGAGCCTCCCCTTAATTAGTCATCTATCCGTCGAACTCTTCAGAGTCCGTCAAATTCTCTGGGTTCCAACTCTCTAGGCCTCAATGCTTTACCGAGAGTTTACTCTCATCCAAGACACAACTCCTTTCCTCCGGAGTATACTGCCTGCCCAGAGCTCAACAACGGATTTCCCCATGACTACTTAGGCTCACAACTTCTTTGTTCGGTACCTGAGGATTTTATCCGACACGGCTATGTTTGGGGTATGGCTCTGATACCACATGTAAGGGATTACGGGACACTACACATATCTCCACAATCGTATGATATTGTCCACTTTGGGCATAACCCTCATGGCTTTGCTTTTGGTTCACTCCAAAAGGCCTCATACTAGTGGAGATAGCTGTCCTCCCTTATAAACCCATGGTCTTCCCCTCATCTAGCCGATGTGGGACTTTGGTCGCACTCCCAACAATCAATAATTGTCAGGACTTGTGGAGACAAAACTCCATCCTTAGTTTGCCGTGTGAAGAAAACATTAGAGAAGTAAATGGGTCAGGCCCATAACTTAAGTAGGGTTGCAATTTATATATATATATGTGATGTGTGCAGCCGACGGGGGGGGGGGGGGGGGACTTTTTCTTGGAGACTTGCGGCTGTTTTCTTTGCTTCAGCAAGTTTGTACGGCAGTGAGGGAAATCTTGAGAAAATTAGATTTATCCTCTTGGGTTGGTGAGGGTTTTGTTTCTTTGTTGATCCCAAGCTATCGGGTTGTGATACTTGGAAGTCAATAGCTTTTGTTGGGCTATTGAAGGTTGGTTTGTGGCGTTATTAAAGGCTTCCTGTAATTTCCCAAATTCTAGTAGAACCTGCAGTTGCAGAAGACTGGACGTAGTCCCGAGCTTGGGGCGAACCAGTATATTTTCGGTGTCGTTTTCTTTTTCCCTATCTCTTATTATTTTTCGTGACTATTATTTTTGGCTTAACCTGTGGAAGGGGAGATAGTTATAATATTATTGATTGTCGTCATAATATTATTGTTATTTGTATTCCGCGTTTTTCTCCCAACAATTGGTATCAGAGCTTTTGGTTCAGGAGTCATGGGTTTTGTAGAGCCAAAAAGTTTCGATGGAGTCATGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTATTTAACTTGCAAGAAAGTGCATAAGGCATTGAAGGAGAGACCGAAAGGGATGACGGACGAAGATTGGGAAGCTCTAGATGAAGAGGCAGTTGCAACCATAAGGATGTGTTTGTCGATGGATGTGGCAAGTCTAGTAGCCCATGAGACAACTGCAGTCAAGTTGATGGAATCGCTTACAAACAGGTATGAAAAACCCTCTGCAAATAATAAGGTCTACCTAGTTAAGAAGTTTTTCAACATGCAAATGTCTGAGGATGCTTCTGTGAATTCCTATATTAATGAGGTTACCACTTTGATTAATCAGTTAAAATCTGTTAAGATAGAATTTTCTGATGAGGTGAATGCTATTCAGTTGTTAACGTCTTTACCTGATAGTTGGGAAACAATGAAGACAGCAGTGTTTAATTCGACTGGAAATAACACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGGCAGGGTAGTAATAAAGAGTCTACTGTAGGGTCAACTTTGGTTATGACTAAAGGTAAAGATAAGGTCGATGAAGATAATGAACCGAGTAGCAGTAGGAAAAAGTGGAAAAACAGGAATGAGGTAGAATGTTATTACTGCCATAAGAAAGGTCACTTGAAGTATCAGTGTAGGAAATTTAAAGAGGATCAGAAAAGAAAACCAGAGGCAAATATAGTGGAGGAGGTTGTCTTAGCTTGTGTTGAGAGTGACACAAAGTATAGTAACCACTTATCAGATTGGATATTAGACAGTGCAGCTTCTGTTCACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGGCATCATGGCCTAGTGAGGATGGGGAATGGTAGAACCTCCAAGACTAGAGGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGGTAAATTGTTACTGCGAGATGTCAGGTACGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAGTTGGCAGATGATGGTTTCGTGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCAAGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAGATGTCAGTTGAATGTTGCCAAAGGTTCAGAGAGACAGTGGATGCCGGTTAAAGCTGCAGATGGTAGTTGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCCGATCAAGATCCTTTAGTTCAGAAACAATTGGGAAGTCCAGGAGAGAAAGTTGATGGCTATCGTGAATCCTCAGTTGTCAGACGCTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAGAGCAGTTGCTAAGGTGAAAGGTCAGGTCTCTAGCTTGGTAACAGGTTTGAATAGAGGATTCAAGCCATTCTCAAAGTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGGTGATACCACTTAGCTGAAGTGGGAATACGTGTCTGTCTTTTCGTCTGGGTGACAGGTCCACGTAGCTAGCCCATACCTCGGGGCAAGCACAGATGAGCTACAGTTATATTCTGATAGTTGCCTGTTTTTGTGAGTTTGTTGTTTTTCAGGTATTTTTGAGCCTTGGAGTTTTACCAAGAAGATCAGAGATAATAGTTGTAGTGGGAGTAGAGATCCTTGGAGTTTGCCAAGATGTTTAGAGTTTTGTTGCAGTGGGAGACGAGATCGTTGTTTTGTCTCCAAGTAGGAAATTGTCAGGACTTGTGGAGACAAAACTCCATCCTTAGTTTGCCGTGTGAAGAAAACATTAGAGAAGTAAATGGGCCAGGCCCATAACTTAAGTAGGGTTGCAATTTATATATATATATGTGATGTATGCAGCCGACGGGGGGGGGGGGACTTTTTCTTGGAGACTTGAGGCTGTTTTCTTTGCTTCAGCAAGTTTGTACGGCAGTGAGGGAAATCTTGAGAAAATTAGATTTATCCTCTTGGGTTGGTGAGGGTTTTGTTTCTTTGTTGATCCCAAGCTATCGGGTTGTGATACTTGGAAGTCAATAGCTTTTGTTGGGCTATTGAAGGTTGGTTTGTGGCGTTATTAAAGGCTTCCTGTAATTTCCCAAATTCTAGTAGAACCTACAGTTGCAGAAGATTGGACGTAGTCCCGAGCTTGGGGCGAACCAGTATATTTTCGGTGTCGTTTTCTTTTTCCCTATCTCTTATTATTTTTCGTGACTATTATTTTTGGCTTAACCTGTGGAAGGGGAGATAGTTATAATATTATTGATTGTCGTCATAATATTATTGTTATTTGTATTCCGCGTTTTTCTCCCAACATTATTATCGTCCAACAGCTCTTTAACTCTATGGTTTTTGAGTTCTATCGGCTTGGAGATAGTTCTAGGACTTCCTTCTCTATTGATCCAAGGATCTTGGTCTATTGTGATGAGAGACTCGTTCCCCACCCTCCATTGATACCCTATGAGGAACAACTCAGACCCCAGCATATACTTCGTCAGGTGAGAGAAGGGGAGTTTCCTATCGGAGCATCGAGGAAAGTCCTCCCTTCCTATTATTTCTGTAGGAAAAAAAGAGAGTCGACATCCCATTTATTTTGGGGATGTAAAGTGGCGAGAGAAGTGTGGTCTAATTTAATTCCAAGATCACTTACTTTGTTCTCGATTTGCAAGGAAGATTGGTCAGCCAAGGAGCACTGGGGTGGATGGAAGCTCACTTGAGCAAGGAAGAAATTGCAAAAGAGATCATCATCTTATGGAAAATTTGGGAATTCAAAAACAAAGCAGCAATTCACAACCAAAAAGCCACAGCAAAGCGGATCCAACAAAGCATTGAAGTAAGCATTAAGGAATGGGAATCTTCTTAACTCAAGACCCAATCGTCGAAAAGGCCAGGGAACCTCGTGAGTCAAGCGCAATGGAAGAAGCCTCCTCCAAATTGCTGGAAAATGAACTCAGACGCCGCTTGGAACAAGAAAGATAGCAGGGGAGGACTCGGGTGGATAGTGCGTGACTCTAACGGAGCCGTGATCTGTTTCGAAATACATCAAATTGATAAGAAGTGGGCAATCAAGACATTGGAAGCAAGAGCTATTCTCGAGGGGCTTAATCATATCACTGATACCTGTAACCGGCTCCAAATTCCTCTTCAGATCGAGTCGGATGGCTTAGAAGTGATAAAAGTCCTCAAAGGAGAAGCTGAAGACCTCTCTGATTTGAAGATTTTCACAGACGACATTTACGCCATCGCCGATAGCTCTGTCTCCATGGAATTCAGCCATTGTAGTCGCCTTTTGAACACAGACACGCACTGTGTTGCGAAAAGAGCTGCAGTTGTGTCTGCTCCTCAACCGGTTTCTTCGTCGTCTTCTCCGTTTATTTCCGGTAGGATCAACGCCTCTCTCTCGCGGGAAAAGGAGCGTGCTTTTTTGGGCTCCAAATATCCCTTCTTGGTTTTACCCTTTTATTAA

mRNA sequence

ATGTGGGACTTTGGTCGCACTCCCAACAATCCTCCCCTCGAACAAAGCCTCAATGCTTTACCGAGAGTTTACTCTCATCCAAGACACAACTCCTTTCCTCCGGAGTATACTGCCTGCCCAGAGCTCAACAACGGATTTCCCCATGACTACTTAGGCTCACAACTTCTTTGTTCGGTACCTGAGGATTTTATCCGACACGGCTATGTTTGGGGTATGGCTCTGATACCACATAACCTGCAGTTGCAGAAGACTGGACGTAGTCCCGAGCTTGGGGCGAACCAGTATATTTTCGATGGTAGTTGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCCGATCAAGATCCTTTAGTTCAGAAACAATTGGGAAGTCCAGGAGAGAAAGTTGATGGCTATCGTGAATCCTCAGTTGTCAGACGCTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAGAGCAGTTGCTAAGGTGAAAGGTCAGGTCTCTAGCTTGGTAACAGGTTTGAATAGAGGATTCAAGCCATTCTCAAAGTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGTGGGAGACGAGATCGTTGTTTTGTCTCCAAGTAGGAAATTGTCAGGACTTGTGGAGACAAAACTCCATCCTTACAAGTTTAACCTACAGTTGCAGAAGATTGGACGTAGTCCCGAGCTTGGGGCGAACCAGTATATTTTCGGTGTCTTCTATCGGCTTGGAGATAGTTCTAGGACTTCCTTCTCTATTGATCCAAGGATCTTGGTCTATTGTGATGAGAGACTCGTTCCCCACCCTCCATTGATACCCTATGAGGAACAACTCAGACCCCAGCATATACTTCGTCAGACCCAATCGTCGAAAAGGCCAGGGAACCTCGTGAGTCAAGCGCAATGGAAGAAGCCTCCTCCAAATTGCTGGAAAATGAACTCAGACGCCGCTTGGAACAAGAAAGATAGCAGGGGAGGACTCGGGTGGATAGTGCGTGACTCTAACGGAGCCGTGATCTGTTTCGAAATACATCAAATTGATAAGAAGTGGGCAATCAAGACATTGGAAGCAAGAGCTATTCTCGAGGGGCTTAATCATATCACTGATACCTGTAACCGGCTCCAAATTCCTCTTCAGATCGAGTCGGATGGCTTAGAAGTGATAAAAGTCCTCAAAGGAGAAGCTGAAGACCTCTCTGATTTGAAGATTTTCACAGACGACATTTACGCCATCGCCGATAGCTCTGTCTCCATGGAATTCAGCCATTGTAGTCGCCTTTTGAACACAGACACGCACTGTGTTGCGAAAAGAGCTGCAGTTGTGTCTGCTCCTCAACCGGTTTCTTCGTCGTCTTCTCCGTTTATTTCCGGTAGGATCAACGCCTCTCTCTCGCGGGAAAAGGAGCGTGCTTTTTTGGGCTCCAAATATCCCTTCTTGGTTTTACCCTTTTATTAA

Coding sequence (CDS)

ATGTGGGACTTTGGTCGCACTCCCAACAATCCTCCCCTCGAACAAAGCCTCAATGCTTTACCGAGAGTTTACTCTCATCCAAGACACAACTCCTTTCCTCCGGAGTATACTGCCTGCCCAGAGCTCAACAACGGATTTCCCCATGACTACTTAGGCTCACAACTTCTTTGTTCGGTACCTGAGGATTTTATCCGACACGGCTATGTTTGGGGTATGGCTCTGATACCACATAACCTGCAGTTGCAGAAGACTGGACGTAGTCCCGAGCTTGGGGCGAACCAGTATATTTTCGATGGTAGTTGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCCGATCAAGATCCTTTAGTTCAGAAACAATTGGGAAGTCCAGGAGAGAAAGTTGATGGCTATCGTGAATCCTCAGTTGTCAGACGCTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAGAGCAGTTGCTAAGGTGAAAGGTCAGGTCTCTAGCTTGGTAACAGGTTTGAATAGAGGATTCAAGCCATTCTCAAAGTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGTGGGAGACGAGATCGTTGTTTTGTCTCCAAGTAGGAAATTGTCAGGACTTGTGGAGACAAAACTCCATCCTTACAAGTTTAACCTACAGTTGCAGAAGATTGGACGTAGTCCCGAGCTTGGGGCGAACCAGTATATTTTCGGTGTCTTCTATCGGCTTGGAGATAGTTCTAGGACTTCCTTCTCTATTGATCCAAGGATCTTGGTCTATTGTGATGAGAGACTCGTTCCCCACCCTCCATTGATACCCTATGAGGAACAACTCAGACCCCAGCATATACTTCGTCAGACCCAATCGTCGAAAAGGCCAGGGAACCTCGTGAGTCAAGCGCAATGGAAGAAGCCTCCTCCAAATTGCTGGAAAATGAACTCAGACGCCGCTTGGAACAAGAAAGATAGCAGGGGAGGACTCGGGTGGATAGTGCGTGACTCTAACGGAGCCGTGATCTGTTTCGAAATACATCAAATTGATAAGAAGTGGGCAATCAAGACATTGGAAGCAAGAGCTATTCTCGAGGGGCTTAATCATATCACTGATACCTGTAACCGGCTCCAAATTCCTCTTCAGATCGAGTCGGATGGCTTAGAAGTGATAAAAGTCCTCAAAGGAGAAGCTGAAGACCTCTCTGATTTGAAGATTTTCACAGACGACATTTACGCCATCGCCGATAGCTCTGTCTCCATGGAATTCAGCCATTGTAGTCGCCTTTTGAACACAGACACGCACTGTGTTGCGAAAAGAGCTGCAGTTGTGTCTGCTCCTCAACCGGTTTCTTCGTCGTCTTCTCCGTTTATTTCCGGTAGGATCAACGCCTCTCTCTCGCGGGAAAAGGAGCGTGCTTTTTTGGGCTCCAAATATCCCTTCTTGGTTTTACCCTTTTATTAA

Protein sequence

MWDFGRTPNNPPLEQSLNALPRVYSHPRHNSFPPEYTACPELNNGFPHDYLGSQLLCSVPEDFIRHGYVWGMALIPHNLQLQKTGRSPELGANQYIFDGSCRGTVEPAARIANFDQSDQDPLVQKQLGSPGEKVDGYRESSVVRRSNELKKSLRRVEASKWKARAVAKVKGQVSSLVTGLNRGFKPFSKCIFFRNSCSGWKKMTVGDEIVVLSPSRKLSGLVETKLHPYKFNLQLQKIGRSPELGANQYIFGVFYRLGDSSRTSFSIDPRILVYCDERLVPHPPLIPYEEQLRPQHILRQTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRAAVVSAPQPVSSSSSPFISGRINASLSREKERAFLGSKYPFLVLPFY

Homology

[Close]

BLAST of Spg015460 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-15
Identity = 52/156 (33.33%), Postives = 87/156 (55.77%), Query Frame = 0


Query: 300 QTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQ 359
           +T  S     L ++ +W+ PP + W +N+DA+W+    RGG+GWI+R  +G ++      
Sbjct: 55  ETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRF 114

Query: 360 IDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLSDLKIFT 419
           ++    +K LEA AILEGL ++T+    +  PL IE+D  EV  +L  + EDL+      
Sbjct: 115 VEACNNVKLLEASAILEGLRNLTNL--GVLRPLHIETDSAEVESLLNRKREDLTKTGWVV 174

Query: 420 DDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRAAVV 456
           ++I  + DS   + F+   R  N   H +A+RA+V+
Sbjct: 175 EEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVL 208

[Close]

BLAST of Spg015460 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 5.2e-15
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 314 AQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARA 373
           A+WK P  N WK+N+DAAW    + GG+GWI+RD  G VI  +   I  +  I  LE  A
Sbjct: 77  ARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMA 136

Query: 374 ILEGLNHI-TDTCNRLQ----IPLQIESDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADS 433
           I EGL  I  + C  +Q     P+ +ESD LE I +L  + +D +++    ++I+ + + 
Sbjct: 137 ICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMED 196

Query: 434 SVSMEFSHCSRLLNTDTHCVAKRA 453
              +   H SR  N   H +A+RA
Sbjct: 197 MKIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Spg015460 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-14
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 0


Query: 296 HILRQTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICF 355
           H++R+ + +       + AQWK P  N WK+N++AAW    + GG+GWI+RD  G VI  
Sbjct: 66  HLIRRIEDN-------TGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKA 125

Query: 356 EIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLSDL 415
               I  +  I  LE  AI EGL  I     R   P+ +ESD LE I +L  + +D +++
Sbjct: 126 SCRIIRAERNITYLEVMAICEGLRAIRQEHCR---PIHLESDSLEAIHLLHRQCQDQTEI 185

Query: 416 KIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA 453
               ++I+ +      +   H SR  N   H +A+RA
Sbjct: 186 IWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

[Close]

BLAST of Spg015460 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-11
Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 315 QWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAI 374
           +W  PP NCWK+N+DA+W+++   GG+GWI+ D  G ++     +I +K  I  LE   I
Sbjct: 104 RWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTI 163

Query: 375 LEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLS 414
           + GL  I     + + P+ +ESD +EVI+++K E  DL+
Sbjct: 164 IRGLQFIN---MQSRSPIYLESDSVEVIRLMKKEDVDLT 199

[Close]

BLAST of Spg015460 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-09
Identity = 52/166 (31.33%), Postives = 80/166 (48.19%), Query Frame = 0


Query: 297  ILRQTQSSKRPGNL-------VSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSN 356
            +L+  Q   +PGN+       + Q +WK P  N  K+N DAA + KD + GLG IVRD+ 
Sbjct: 1267 VLKAYQRVSKPGNVHGAKDRGIDQQKWKPPSQNVLKLNVDAAVSTKDQKVGLGAIVRDAE 1326

Query: 357  GAVICFEIHQIDKKWAIKTLEARAILEGL---NHITDTCNRLQIPLQIESDGLEVIKVLK 416
            G ++   I Q   +  +   EA AI  GL   N I+ +       L +ESD  EV+++L 
Sbjct: 1327 GKILAVGIKQAQFRERVSLAEAEAIHWGLQVANQISSS------SLIVESDCKEVVELLN 1386

Query: 417  GEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA 453
                  +++     D+   +     ++FS   R  NT  H +AK A
Sbjct: 1387 NTKGSRTEIHWILSDVRRESKEFKQVQFSFIPRTCNTYAHALAKFA 1426

[Close]

BLAST of Spg015460 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-15
Identity = 52/156 (33.33%), Postives = 87/156 (55.77%), Query Frame = 0


Query: 300 QTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQ 359
           +T  S     L ++ +W+ PP + W +N+DA+W+    RGG+GWI+R  +G ++      
Sbjct: 55  ETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRF 114

Query: 360 IDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLSDLKIFT 419
           ++    +K LEA AILEGL ++T+    +  PL IE+D  EV  +L  + EDL+      
Sbjct: 115 VEACNNVKLLEASAILEGLRNLTNL--GVLRPLHIETDSAEVESLLNRKREDLTKTGWVV 174

Query: 420 DDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRAAVV 456
           ++I  + DS   + F+   R  N   H +A+RA+V+
Sbjct: 175 EEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVL 208

[Close]

BLAST of Spg015460 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-15
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 314 AQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARA 373
           A+WK P  N WK+N+DAAW    + GG+GWI+RD  G VI  +   I  +  I  LE  A
Sbjct: 77  ARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMA 136

Query: 374 ILEGLNHI-TDTCNRLQ----IPLQIESDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADS 433
           I EGL  I  + C  +Q     P+ +ESD LE I +L  + +D +++    ++I+ + + 
Sbjct: 137 ICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMED 196

Query: 434 SVSMEFSHCSRLLNTDTHCVAKRA 453
              +   H SR  N   H +A+RA
Sbjct: 197 MKIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Spg015460 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.6e-15
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 0


Query: 296 HILRQTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICF 355
           H++R+ + +       + AQWK P  N WK+N++AAW    + GG+GWI+RD  G VI  
Sbjct: 66  HLIRRIEDN-------TGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKA 125

Query: 356 EIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLSDL 415
               I  +  I  LE  AI EGL  I     R   P+ +ESD LE I +L  + +D +++
Sbjct: 126 SCRIIRAERNITYLEVMAICEGLRAIRQEHCR---PIHLESDSLEAIHLLHRQCQDQTEI 185

Query: 416 KIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA 453
               ++I+ +      +   H SR  N   H +A+RA
Sbjct: 186 IWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

[Close]

BLAST of Spg015460 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.6e-12
Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 315 QWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAI 374
           +W  PP NCWK+N+DA+W+++   GG+GWI+ D  G ++     +I +K  I  LE   I
Sbjct: 104 RWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTI 163

Query: 375 LEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLS 414
           + GL  I     + + P+ +ESD +EVI+++K E  DL+
Sbjct: 164 IRGLQFIN---MQSRSPIYLESDSVEVIRLMKKEDVDLT 199

[Close]

BLAST of Spg015460 vs. ExPASy TrEMBL
Match: A0A803QL79 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-10
Identity = 61/200 (30.50%), Postives = 90/200 (45.00%), Query Frame = 0


Query: 274 YCDERLVPHPPLIPY---------EEQLRPQHILRQTQSSKRPGNLV--------SQAQW 333
           Y  ++  P P L+ Y           Q R     +Q  SS RP N          +Q  W
Sbjct: 166 YHGKKTKPVPLLLDYAVKYLKDYHHAQTRSAATSQQLLSSSRPVNSTAASFSTTPTQPVW 225

Query: 334 KKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILE 393
             PPP   K+N+DAA N   S  GLG ++RDSNG ++      I  ++  + +EA A+  
Sbjct: 226 IAPPPGQLKLNTDAAINMSSSIIGLGAVLRDSNGIIVAAMATSIKGRFKPEEMEASALSW 285

Query: 394 GLNHITDTCNRLQIPL-QIESDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFS 453
            L     T  +LQ+P+  IE+D L V++ LK     LS       D++ +  +    + S
Sbjct: 286 SLK----TLLQLQLPVHHIETDSLMVVQNLKKATTSLSAFHAILKDVHFLVSNFPRAQIS 345

Query: 454 HCSRLLNTDTHCVAKRAAVV 456
           H  R  N + H +AK A  V
Sbjct: 346 HVFRSANNEAHLLAKFALTV 361

[Close]

BLAST of Spg015460 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-07
Identity = 47/167 (28.14%), Postives = 76/167 (45.51%), Query Frame = 0


Query: 289 EEQLRPQHILRQTQS--SKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVR 348
           E+ L    I  + +S  +K   N  S  +W+ PP    K N+DA WN+ + R G+GW++R
Sbjct: 391 EDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLR 450

Query: 349 DSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQI-ESDGLEVIKVL 408
           +  G V       + K  ++  LEA   LE +     + +R Q    I ESD   +I++L
Sbjct: 451 NEKGEVKWMGARALPKLKSV--LEAE--LEAMRWAVLSLSRFQYNYVIFESDSQVLIEIL 510

Query: 409 KGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA 453
             + E    LK    D+  +      ++F    R  NT    VA+ +
Sbjct: 511 NND-EIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVARES 552

[Close]

BLAST of Spg015460 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.0e-05
Identity = 30/95 (31.58%), Postives = 46/95 (48.42%), Query Frame = 0


Query: 315 QWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAI 374
           QWK PP    K N+DA W  ++ R G+GWI+R+ +G V+      + +      LEA   
Sbjct: 136 QWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPR--TKNVLEAE-- 195

Query: 375 LEGLNHITDTCNRLQIP-LQIESDGLEVIKVLKGE 409
           LE L     T +R     +  ESD   ++ +L  +
Sbjct: 196 LEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSD 226

[Close]

BLAST of Spg015460 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 1.2e-04
Identity = 41/179 (22.91%), Postives = 79/179 (44.13%), Query Frame = 0


Query: 300 QTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQ 359
           + Q+  R  +     +W  P  +  K N DA+ +++++  GLGWI+R+S G VI   + +
Sbjct: 89  EQQNGNRNADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGK 148

Query: 360 IDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLSDLKIFT 419
              +   +  E   ++  +       ++  I    E D   + +++  ++ +   L+ F 
Sbjct: 149 FQGRMTTEEAECSTLIWAIQASYGFGHKKVI---FEGDNQTITRMINTKSSN-PRLQHFL 208

Query: 420 DDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRAAVVSAPQPVSSSSSPFISGRINASLS 479
           D I +   S  S+EFS   R  N     +AK+A   +    +  S   F+S  +N   S
Sbjct: 209 DTIQSWIPSFESIEFSFKHREQNGCADFLAKQAIKENTQWSLFHSCPYFLSPYVNNDYS 263

The following BLAST results are available for this feature:

BLAST of Spg015460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	4.0e-15	33.33	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022156777.1	5.2e-15	36.11	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	2.0e-14	33.76	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022143317.1	1.6e-11	38.38	uncharacterized protein LOC111013216 [Momordica charantia]	[more]
XP_006491472.1	1.5e-09	31.33	uncharacterized protein LOC102626455 [Citrus sinensis]	[more]

BLAST of Spg015460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	1.9e-15	33.33	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DSV1	2.5e-15	36.11	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP26	9.6e-15	33.76	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1CQG0	7.6e-12	38.38	uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A803QL79	2.4e-10	30.50	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Spg015460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	1.1e-07	28.14	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	1.0e-05	31.58	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G65005.1	1.2e-04	22.91	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 327..452 e-value: 1.6E-17 score: 63.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 324..457 e-value: 1.6E-9 score: 39.8
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 313..456
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 313..456
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 327..450 e-value: 2.76766E-12 score: 61.5612
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 322..453

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015460.1	Spg015460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity