Spg015425 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg015425
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Locationscaffold10: 13633943 .. 13636386 (-)
RNA-Seq ExpressionSpg015425
SyntenySpg015425
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCATTGAGGAAGAAGAGAGTACATTTTCAACTCTGAATGTCACTCGACCTTCAACTTTTCAAAGGTTAAATATGCCCATTGGGAAAGAAGAGAGTACATTTTCAACTTCGGATGTGACTCGACCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGATAAAAAAGAACAGTCTGCTTCGTCAATTTCTCACCGACTTCAATATGAAGATACTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGTAAACAAATTGTATACTTGTTTCAATAAAGTGTTATTGAGTTTCTACAATAAAGTGTTATTGTTAAATAGTGCACAATTTGACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTGTATGTAACTTGAACTAGTATGTGGGGACATACGGGGATCGATGTTCAAGTAACAACCTAAAAGGTCTATAGTACAAGGATAAGGTTGGGTACCTTATCCTGGTAACACTATGAGATACGGCCTGCTTTGTATTTGATACAGACGTATTGATCCAAAGCGTCCATGTAGTAGACATGCAAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGATCGGACCACGAAATAGTCAACCATTAGTTATAACACCGTTAACTAGTTAGGTTACTGTTTCAATAGGATGACCTAGGTAACTGAGTCTTAATTCTGAGTGTGTCATGAACTCCTTCTCATGAGGGATTGTCCTTTGATTAGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCATTCCCGCTTCTAGGAGAACTAGATGAGTGTTCCCTTAAGTGGTGACTCCGGGACTTGAACAAAGGGATCCCGCCCTCTCATTGGCCCGAGAGGGACTTTCTGTTTTATGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCGTTGGTACTTAAGGAGACAGATGTAACACAGGGGTAAAACGGTAATTTAACCCAACTGTGATTACGGACACTCGTGAAGGATTGACTTACCCGCATAGGTCTACATCCATGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGTGGGTCTTTAGTGGAATGACCCACAGTTAATGAATATTGGTTAACTTGATTAATGAGTTTAATCAGTTAACCTCATATCATTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCCCTGCTAGCTCGTAAAGAGTAATTAGGAACAAATATATCTTGAGAGAATTTGAATAGTTCAAATTCATATTGAGAATTAAGTTAATTGTATGAGATACAAATTAATATAATGTATAGTGATGCATTAAAATATAAAGTCTAATTTAAGATTAAACTTCATTATATTGAGAGATTGATATATTTGAAAGAGTTCAAATATATGTCTAATTAAATATATGGTATTTAATTAGAAGATGAATTAATTAATTATGAATTAATTAATTATTCAATTTAGTTTAAATTAAATGAGATTTAATTAAACTATAGTCTATGAGGGAATTATTAGAATATGATTCTAATATGTAATTAATTGAATATGGGAGATATATAATTAATTGTAAAATTAATTAATTATTGAAATTAATTAATTGATTAGTTTAATTGAATTAATTAAATGTGATTTAATTAAGTTTAATTAAAATATATTATGTGAGGAAATTACATTTAAATAAGATTTAAATGTGCATAAAATTAATTAATTAATATGATTAATTAATTAACATTTAATTAATTAATATGATTAGTTAATTAACATTTAATTAATTGATTTAATCAATTAATTAATTGATCTTGATCTAACGGTCAAGATTGTTTCCTAACCTCACATTAGGGTTTCCTCTCTTATAAAAGGAAAGGTTATGAGAATCCTAGCCCTAAGGTCTCATTCTAGCCTCCCTCACATATTCTCTCAAGAACTCTAGAGAGAATTTTTCTCTCCAAGAGTTTTTCCCAATCAAGATTAAGTAGTCCCACAACTACGTTCCTAATCTTAGAGTCATAGCGGGGAAGATCAAATTGGTGGTGTCCCAATTGTTGACGCAAATCAAGAAAGACTTTCTTGAAGAATTCAGAGACGACAACGACGGTATGTTTGCTTCTCCCCTTTAGAATTAGTTCTAAGGTTGTATGCTTAGCCTTAATAATTGATTTAGAAAAGTTTTCTAAATTTTGCCAATGTATTGATATTTTGGTGAAAACAAAATTAACTACGAAACGGTCTAATTGCTTCCGCTGTAACGGAATTGGGAATTCCAATCCTTCAGATACGAGGAAAAATGAAAAGATCACGAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTGAAGGGATAAAAGCCCCACGCAGCGGAAAGTATTACCGAACTACTCAGAGTCTTAGATTCTAA

mRNA sequence

ATGCCCATTGAGGAAGAAGAGAGTACATTTTCAACTCTGAATGTCACTCGACCTTCAACTTTTCAAAGGTTAAATATGCCCATTGGGAAAGAAGAGAGTACATTTTCAACTTCGGATGTGACTCGACCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGATAAAAAAGAACAGTCTGCTTCGTCAATTTCTCACCGACTTCAATATGAAGATACTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCATTCCCGCTTCTAGGAGAACTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCAGTCATAGCGGGGAAGATCAAATTGGTGGTGTCCCAATTGTTGACGCAAATCAAGAAAGACTTTCTTGAAGAATTCAGAGACGACAACGACGATACGAGGAAAAATGAAAAGATCACGAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTGAAGGGATAAAAGCCCCACGCAGCGGAAAGTATTACCGAACTACTCAGAGTCTTAGATTCTAA

Coding sequence (CDS)

ATGCCCATTGAGGAAGAAGAGAGTACATTTTCAACTCTGAATGTCACTCGACCTTCAACTTTTCAAAGGTTAAATATGCCCATTGGGAAAGAAGAGAGTACATTTTCAACTTCGGATGTGACTCGACCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGATAAAAAAGAACAGTCTGCTTCGTCAATTTCTCACCGACTTCAATATGAAGATACTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCATTCCCGCTTCTAGGAGAACTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCAGTCATAGCGGGGAAGATCAAATTGGTGGTGTCCCAATTGTTGACGCAAATCAAGAAAGACTTTCTTGAAGAATTCAGAGACGACAACGACGATACGAGGAAAAATGAAAAGATCACGAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTGAAGGGATAAAAGCCCCACGCAGCGGAAAGTATTACCGAACTACTCAGAGTCTTAGATTCTAA

Protein sequence

MPIEEEESTFSTLNVTRPSTFQRLNMPIGKEESTFSTSDVTRPSVFQRLSVTTRRDKKEQSASSISHRLQYEDTVGFYALKLVDSESWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGELDECPLGPPASSVIAGKIKLVVSQLLTQIKKDFLEEFRDDNDDTRKNEKITKADGEIRSAVPEGIKAPRSGKYYRTTQSLRF
Homology
[Close]
BLAST of Spg015425 vs. NCBI nr
Match: KAA0065950.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-07
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 89  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG 127
           VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]
BLAST of Spg015425 vs. NCBI nr
Match: TYK27885.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-07
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 86  ESWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGELDECPL 134
           + ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG +D+C L
Sbjct: 81  DMYIRVAKFPTQYAYHFEDKTEWGAGNIITQDGIHFFPPLGYVDKCSL 128

[Close]
BLAST of Spg015425 vs. NCBI nr
Match: KAA0025994.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-06
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 87  SWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG 127
           S VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Sbjct: 221 SLVRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]
BLAST of Spg015425 vs. NCBI nr
Match: KAA0043328.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-06
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 86  ESWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEL 129
           + ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Sbjct: 166 DMYIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSFPPLGSI 208

[Close]
BLAST of Spg015425 vs. NCBI nr
Match: TYK26313.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-05
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 81  KLVDSESW--VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLL 126
           KLV S S   VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP L
Sbjct: 187 KLVPSSSLKKVRVARLPTRYAYHFGDKTEWGVGNIITQDGIHSFPPL 233

[Close]
BLAST of Spg015425 vs. ExPASy TrEMBL
Match: A0A5A7VFG5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00390 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 89  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG 127
           VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]
BLAST of Spg015425 vs. ExPASy TrEMBL
Match: A0A5D3DX33 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00690 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-07
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 86  ESWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGELDECPL 134
           + ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG +D+C L
Sbjct: 81  DMYIRVAKFPTQYAYHFEDKTEWGAGNIITQDGIHFFPPLGYVDKCSL 128

[Close]
BLAST of Spg015425 vs. ExPASy TrEMBL
Match: A0A5A7SJY0 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003160 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.9e-07
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 87  SWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG 127
           S VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Sbjct: 221 SLVRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]
BLAST of Spg015425 vs. ExPASy TrEMBL
Match: A0A5A7TKJ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002390 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-06
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 86  ESWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEL 129
           + ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Sbjct: 166 DMYIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSFPPLGSI 208

[Close]
BLAST of Spg015425 vs. ExPASy TrEMBL
Match: A0A5A7VKV9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001280 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.8e-06
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 81  KLVDSESW--VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLL 126
           KLV S S   VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP L
Sbjct: 164 KLVPSSSLKKVRVARLPTRYAYHFGDKTEWGVGNIITQDGIHSFPPL 210

The following BLAST results are available for this feature:
BLAST of Spg015425 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065950.12.2e-0776.32ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-cop... [more]
TYK27885.13.7e-0758.33retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
KAA0025994.11.4e-0672.50retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa][more]
KAA0043328.14.1e-0660.47gag/pol protein [Cucumis melo var. makuwa][more]
TYK26313.11.2e-0563.83gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Spg015425 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg015425 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VFG51.1e-0776.32Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DX331.8e-0758.33Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
A0A5A7SJY06.9e-0772.50Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa... [more]
A0A5A7TKJ42.0e-0660.47Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G0023... [more]
A0A5A7VKV95.8e-0663.83Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G00128... [more]
BLAST of Spg015425 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg015425.1Spg015425.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding