Spg015307 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015307
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein RADIALIS-like 1
Location	scaffold3: 34190143 .. 34191986 (+)
RNA-Seq Expression	Spg015307
Synteny	Spg015307

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGGTACGTATTGCCTTAGGCTTGGGGACTGCCCTAGTTCAAGTTGGAGCAGTAAATTAAAGCAATGGTAGGACAACCCTAGCTTTTATGATCCTGATGCCTTTGTTTCCCAAAATCTAGGTCTATATATTCCTATAGATATTTAGTGGAGTCCAATGCATATGCTTATGCTTTTCTTTTATTGGTAGAGAATATAATGTGAATGTGATTGAATTCTCCCAATCATATATATTGCAAAAAGTTCATATATAGTATATATAAATCTATAAATTCTTCTCAAATTGAATAAAATATAATAAACAATCTTTTGGAGGGACTATACTAGTTATTATTATAGAGGCAAAAGAAGGCCTTCTTTTTTAATATTTCATTGGTTAGTCAAACTAAATAGAAGGGTATTCTCATTACATTTCAATCATTAACTTGTATATTTATTTTAAGGATTTGGGTCTAGCTAGTGTTCACAATGAGTATCCCGTGTTTTTGAATTTGTATATTTACTCTATTGCTGTGGGGCGAACATCTATTTTTTTAGAAGATCGTAGAAACTCTTATCTTCAAGCATCTCATTTTGGTTGAAATTCTCTTACCCTTTTCTTTTCCCATTATCTTTCACACTGTTATAGGTAATTTTGGACCACCTCGATATGCAAGGAATTGAGGAGGACAGTGCAATATCAGCCCAAGGAGACAACCAGGAAACGGGGCCTGGAGGAAGAACAGGCCAGAGGGTCGGGCCAAGGTCGGAGGGATCGGCCCTTGGCCCAACCCATATGGTCGGCCTTGGCCCGAGGCCGAGGCCGAGGCCAACCACCCGGCCCACTTGCGTGGGCTGAGTCCTTCCGCCTCCATTCGGTCCCTGTTGTCTTTAACCGCCCTGGTTCCGCTTGGTTCAGCCCTGAATCGCCTCCGAACGCCTAGAAACCCTAGAGCAGGAAATGTATTTAAACCATTTTTCATCACTGAAGAAGAGATCCCGAACTCTATTCTCTGATTCTTCTCTTACTCTTGCTCTCTTACTTCCCATCGTTCTGCTTGCTGACTTAAGCATCGGAGGCAGTGTGGCAAACACCACACCGGCAGGTTTTACTGTCTTGCAGGCCACGTCTTCCCCCCTCTCAAACAAATTTACCATTGGTGGCACGTGAAGGTCAGGTGAGTTCTGTCTGTCCAAATTTGACAATCAACCCACACACAATATTTATAAAATAGAGAAGAAGAAGGTAAATTCATAATGACTTTGATATGAGTTTAATTAGTTTGTTCTATCTTCTAGGTTTATATTAATTACAAGATCAAAACTTATATTTGCTCAAAAAGTTTCCTTCTTCTTTATGTGGAAGGAAAAAGACAAAAACCCTTTGAAAGATATATCCTGATTCTCCATCTCCAAGTTCTTGTGGTTTGTGAGGACAGAAATCACCAAAATTCCCTTTCAAATGCAAAAGATTTCCCACTGCCCAACTGACATATATATGGATACTCTCTCTTAGGCCTCCTCTTTATAAAGATCAGTTTCACACATCATTATTTTGCCTCTTCACTTCAAACCCATTTATTCATTTAAACTTTCCCTTTTGTTTTGCCTTTGAAATGGCTTCAATGTCAGCTCATGGGTCTAGTTCTTGGACTGCGGTGGAAAACAAAGCGTTTGAGAAAGCTTTAGCAGTGTTTGATGAAGACACACCTGAGCGATGGCAGAATGTTGCGAAGGCCATTGGTGGCAAAACCGCACAAGAAGTGAAGACACATTATGAACGTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTCAAATTCCATTCCCATACCCAACCTCCAACAGATCATGTCATTGA

mRNA sequence

ATGACAAGGTCTATATATTCCTATAGATATTTAGTGGAGTCCAATGCATATGCTTATGCTTTTCTTTTATTGGTAATTTTGGACCACCTCGATATGCAAGGAATTGAGGAGGACAGTGCAATATCAGCCCAAGGAGACAACCAGGAAACGGGGCCTGGAGGAAGAACAGGCCAGAGGGTCGGGCCAAGGCCTCCTCTTTATAAAGATCAGTTTCACACATCATTATTTTGCCTCTTCACTTCAAACCCATTTATTCATTTAAACTTTCCCTTTTGTTTTGCCTTTGAAATGGCTTCAATGTCAGCTCATGGGTCTAGTTCTTGGACTGCGGTGGAAAACAAAGCGTTTGAGAAAGCTTTAGCAGTGTTTGATGAAGACACACCTGAGCGATGGCAGAATGTTGCGAAGGCCATTGGTGGCAAAACCGCACAAGAAGTGAAGACACATTATGAACGTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTCAAATTCCATTCCCATACCCAACCTCCAACAGATCATGTCATTGA

Coding sequence (CDS)

ATGACAAGGTCTATATATTCCTATAGATATTTAGTGGAGTCCAATGCATATGCTTATGCTTTTCTTTTATTGGTAATTTTGGACCACCTCGATATGCAAGGAATTGAGGAGGACAGTGCAATATCAGCCCAAGGAGACAACCAGGAAACGGGGCCTGGAGGAAGAACAGGCCAGAGGGTCGGGCCAAGGCCTCCTCTTTATAAAGATCAGTTTCACACATCATTATTTTGCCTCTTCACTTCAAACCCATTTATTCATTTAAACTTTCCCTTTTGTTTTGCCTTTGAAATGGCTTCAATGTCAGCTCATGGGTCTAGTTCTTGGACTGCGGTGGAAAACAAAGCGTTTGAGAAAGCTTTAGCAGTGTTTGATGAAGACACACCTGAGCGATGGCAGAATGTTGCGAAGGCCATTGGTGGCAAAACCGCACAAGAAGTGAAGACACATTATGAACGTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTCAAATTCCATTCCCATACCCAACCTCCAACAGATCATGTCATTGA

Protein sequence

MTRSIYSYRYLVESNAYAYAFLLLVILDHLDMQGIEEDSAISAQGDNQETGPGGRTGQRVGPRPPLYKDQFHTSLFCLFTSNPFIHLNFPFCFAFEMASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSCH

Homology

[Close]

BLAST of Spg015307 vs. NCBI nr
Match: XP_022952660.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_022952661.1 protein RADIALIS-like 1 [Cucurbita moschata] >XP_023554744.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-27
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MASMSAHGSS+WTA ENKAFEKALAVFD+DTPERW NVAKAIGGKT  EVK HY+ LV+D
Sbjct: 1   MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKD 60

Query: 157 VKHIESGQIPFPYPTSNRSC 177
           VKHIESG+I FPY +S R C
Sbjct: 61  VKHIESGEINFPYRSSTRLC 80

[Close]

BLAST of Spg015307 vs. NCBI nr
Match: XP_008447026.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 3.6e-27
Identity = 60/79 (75.95%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MASMSAHGS+ WTA+ENKAFEKALA++D+DTPERW NVAKAIGGKT ++VK HY+ L+ED
Sbjct: 1   MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60

Query: 157 VKHIESGQIPFPYPTSNRS 176
           V HIE+GQIPFPY  S RS
Sbjct: 61  VNHIENGQIPFPYRNSTRS 79

[Close]

BLAST of Spg015307 vs. NCBI nr
Match: XP_022136064.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 132.1 bits (331), Expect = 4.7e-27
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MASMS+HGSS+WTA +NKAFEKALAV+D+DTPERW NVAKA+GGKTA+EVK HYE LVED
Sbjct: 1   MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 157 VKHIESGQIPFPYPTSNRSCH 178
           VK IESGQ+ FPY TS    H
Sbjct: 61  VKFIESGQVSFPYRTSGGGSH 81

[Close]

BLAST of Spg015307 vs. NCBI nr
Match: XP_022972544.1 (protein RADIALIS-like 1 [Cucurbita maxima] >XP_022972545.1 protein RADIALIS-like 1 [Cucurbita maxima])

HSP 1 Score: 132.1 bits (331), Expect = 4.7e-27
Identity = 63/80 (78.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MASMSAHGSS+WTA ENKAFEKALAVFD+DTP+RW NVAKAIGGKT  EVK HY+ LV D
Sbjct: 1   MASMSAHGSSAWTARENKAFEKALAVFDQDTPDRWVNVAKAIGGKTEDEVKRHYQLLVND 60

Query: 157 VKHIESGQIPFPYPTSNRSC 177
           VKHIESG+I FPY +S R C
Sbjct: 61  VKHIESGEINFPYRSSTRLC 80

[Close]

BLAST of Spg015307 vs. NCBI nr
Match: KAE8645640.1 (hypothetical protein Csa_020521 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 3.0e-26
Identity = 62/82 (75.61%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 97  MASMSAHG-SSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVE 156
           MASM+AHG S++WT  +NKAFEKALAV+D+DTPERW NVAKAIGGKT +EVK+HY+ LVE
Sbjct: 1   MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 157 DVKHIESGQIPFPYPTSNRSCH 178
           DVKHIESG+IPFPY  S RS H
Sbjct: 61  DVKHIESGEIPFPYRRSTRSSH 82

[Close]

BLAST of Spg015307 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-23
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 98  ASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDV 157
           +SMS+  S SWTA +NKAFE+ALA +D+DTP RWQNVAK +GGKT +EVK HYE LV+D+
Sbjct: 4   SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 158 KHIESGQIPFPYPTSNRSC 177
             IE+G +PFP   ++  C
Sbjct: 64  NSIENGHVPFPNYRTSGGC 82

[Close]

BLAST of Spg015307 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.2e-21
Identity = 43/70 (61.43%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 99  SMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVK 158
           SMS++GS SWT  +NKAFE+ALAV+D+DTP+RW NVA+A+GGKT +E K  Y+ LV D++
Sbjct: 5   SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 159 HIESGQIPFP 169
            IE+G +PFP
Sbjct: 65  SIENGHVPFP 74

[Close]

BLAST of Spg015307 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.8e-21
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MAS S   S+SWT  ENK FE+ALA +D+DTP+RW NVA+A+GGK+A+EV+ HYE L+ D
Sbjct: 1   MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 157 VKHIESGQIPFPYPTSNRSCH 178
           V  IESG+ P P   SN + H
Sbjct: 61  VNDIESGRYPHPNYRSNGNNH 81

[Close]

BLAST of Spg015307 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.4e-20
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MAS S   SSSWT+ +NK FE+ALAV+D+DTP+RWQNVAKA+G K+A+EVK HY+ LVED
Sbjct: 1   MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 157 VKHIESGQIPFP 169
           + +IE   +P P
Sbjct: 61  LMNIEQDLVPLP 72

[Close]

BLAST of Spg015307 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.4e-20
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MAS    G   W+A ENKAFE+ALAV+D+DTP+RW NVA+A+ G+T +EVK HYE LVED
Sbjct: 1   MASTRGSG-RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 60

Query: 157 VKHIESGQIPFP 169
           +K+IESG++PFP
Sbjct: 61  IKYIESGKVPFP 71

[Close]

BLAST of Spg015307 vs. ExPASy TrEMBL
Match: A0A0A0K3K0 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 63/79 (79.75%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MASMSAHGSS+WTA+ENKAFEKALA++D+DTPERW NVAKAIGGKT +EVK HY+ L+ED
Sbjct: 1   MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 157 VKHIESGQIPFPYPTSNRS 176
           V HIESGQIPFPY  S RS
Sbjct: 61  VNHIESGQIPFPYRKSTRS 79

[Close]

BLAST of Spg015307 vs. ExPASy TrEMBL
Match: A0A6J1GKV1 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455288 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 7.8e-28
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MASMSAHGSS+WTA ENKAFEKALAVFD+DTPERW NVAKAIGGKT  EVK HY+ LV+D
Sbjct: 1   MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKD 60

Query: 157 VKHIESGQIPFPYPTSNRSC 177
           VKHIESG+I FPY +S R C
Sbjct: 61  VKHIESGEINFPYRSSTRLC 80

[Close]

BLAST of Spg015307 vs. ExPASy TrEMBL
Match: A0A1S3BGF0 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.7e-27
Identity = 60/79 (75.95%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MASMSAHGS+ WTA+ENKAFEKALA++D+DTPERW NVAKAIGGKT ++VK HY+ L+ED
Sbjct: 1   MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60

Query: 157 VKHIESGQIPFPYPTSNRS 176
           V HIE+GQIPFPY  S RS
Sbjct: 61  VNHIENGQIPFPYRNSTRS 79

[Close]

BLAST of Spg015307 vs. ExPASy TrEMBL
Match: A0A6J1I8Y0 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471083 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.3e-27
Identity = 63/80 (78.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MASMSAHGSS+WTA ENKAFEKALAVFD+DTP+RW NVAKAIGGKT  EVK HY+ LV D
Sbjct: 1   MASMSAHGSSAWTARENKAFEKALAVFDQDTPDRWVNVAKAIGGKTEDEVKRHYQLLVND 60

Query: 157 VKHIESGQIPFPYPTSNRSC 177
           VKHIESG+I FPY +S R C
Sbjct: 61  VKHIESGEINFPYRSSTRLC 80

[Close]

BLAST of Spg015307 vs. ExPASy TrEMBL
Match: A0A6J1C385 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.3e-27
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MASMS+HGSS+WTA +NKAFEKALAV+D+DTPERW NVAKA+GGKTA+EVK HYE LVED
Sbjct: 1   MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 157 VKHIESGQIPFPYPTSNRSCH 178
           VK IESGQ+ FPY TS    H
Sbjct: 61  VKFIESGQVSFPYRTSGGGSH 81

[Close]

BLAST of Spg015307 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 108.2 bits (269), Expect = 6.7e-24
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 98  ASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDV 157
           +SMS+  S SWTA +NKAFE+ALA +D+DTP RWQNVAK +GGKT +EVK HYE LV+D+
Sbjct: 4   SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 158 KHIESGQIPFPYPTSNRSC 177
             IE+G +PFP   ++  C
Sbjct: 64  NSIENGHVPFPNYRTSGGC 82

[Close]

BLAST of Spg015307 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-22
Identity = 43/70 (61.43%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 99  SMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVK 158
           SMS++GS SWT  +NKAFE+ALAV+D+DTP+RW NVA+A+GGKT +E K  Y+ LV D++
Sbjct: 5   SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 159 HIESGQIPFP 169
            IE+G +PFP
Sbjct: 65  SIENGHVPFP 74

[Close]

BLAST of Spg015307 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 99.4 bits (246), Expect = 3.1e-21
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MAS S   SSSWT+ +NK FE+ALAV+D+DTP+RWQNVAKA+G K+A+EVK HY+ LVED
Sbjct: 1   MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 157 VKHIESGQIPFP 169
           + +IE   +P P
Sbjct: 61  LMNIEQDLVPLP 72

[Close]

BLAST of Spg015307 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-20
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+GGKT +EVK HY+ LVED
Sbjct: 1   MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 157 VKHIESGQIPFP 169
           + +IE+G++P P
Sbjct: 61  LINIETGRVPLP 72

[Close]

BLAST of Spg015307 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-20
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 97  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVED 156
           MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+GGKT +EVK HY+ LVED
Sbjct: 1   MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 157 VKHIESGQIPFP 169
           + +IE+G++P P
Sbjct: 61  LINIETGRVPLP 72

The following BLAST results are available for this feature:

BLAST of Spg015307 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952660.1	1.6e-27	80.00	protein RADIALIS-like 1 [Cucurbita moschata] >XP_022952661.1 protein RADIALIS-li...	[more]
XP_008447026.1	3.6e-27	75.95	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_022136064.1	4.7e-27	76.54	protein RADIALIS-like 1 [Momordica charantia]	[more]
XP_022972544.1	4.7e-27	78.75	protein RADIALIS-like 1 [Cucurbita maxima] >XP_022972545.1 protein RADIALIS-like...	[more]
KAE8645640.1	3.0e-26	75.61	hypothetical protein Csa_020521 [Cucumis sativus]	[more]

BLAST of Spg015307 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	9.5e-23	59.49	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	5.2e-21	61.43	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	6.8e-21	58.02	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q8GW75	4.4e-20	62.50	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q58FS3	4.4e-20	63.89	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Spg015307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3K0	1.6e-28	79.75	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 S...	[more]
A0A6J1GKV1	7.8e-28	80.00	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455288 PE=4 SV=1	[more]
A0A1S3BGF0	1.7e-27	75.95	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1	[more]
A0A6J1I8Y0	2.3e-27	78.75	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471083 PE=4 SV=1	[more]
A0A6J1C385	2.3e-27	76.54	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1	[more]

BLAST of Spg015307 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	6.7e-24	59.49	RAD-like 1	[more]
AT2G21650.1	3.7e-22	61.43	Homeodomain-like superfamily protein	[more]
AT1G19510.1	3.1e-21	62.50	RAD-like 5	[more]
AT1G75250.1	1.2e-20	61.11	RAD-like 6	[more]
AT1G75250.2	1.2e-20	61.11	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 104..156 e-value: 3.2E-8 score: 43.3
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 106..154 score: 6.585638
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 107..154 e-value: 1.13496E-7 score: 44.4886
None	No IPR available	GENE3D	1.10.10.60		coord: 99..167 e-value: 1.3E-23 score: 84.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..63
None	No IPR available	PANTHER	PTHR43952:SF68	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 98..173
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 98..173
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 103..158 score: 9.798885
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 106..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015307.1	Spg015307.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity