Spg015290 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015290
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosomal L18p/L5e family protein
Location	scaffold3: 37449502 .. 37449882 (+)
RNA-Seq Expression	Spg015290
Synteny	Spg015290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACAAGCCAGAACCACCTCCTCCGCCTCGTTCTTTCCTGCCGGAAAATCACTGCTCAGGTCACCAATCCGGCCACCTCCTCCATCATCGCCATGGCCTCCTCCTCCGAGCAGGAATTCGTTGCCTATTACCGCTCTAAGCTCCACCGCTTTCCTCGATCCAACAACTTTTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCTCCGTTTGAAGGAGATCGGCGTTTCCGATGTTCGGATCGATCTCGCCGAAGAGCTTTCCCGCCCTGTGTACTATCGGAAGATGGTTCTACCGCTCTTCGATTCGGTTCGGCGCTCCGGCGTCGCCGTCGACGGCGCTGAGAAGCTCGGAACAGGTGCGATCTAG

mRNA sequence

ATGTCCACAAGCCAGAACCACCTCCTCCGCCTCGTTCTTTCCTGCCGGAAAATCACTGCTCAGGTCACCAATCCGGCCACCTCCTCCATCATCGCCATGGCCTCCTCCTCCGAGCAGGAATTCGTTGCCTATTACCGCTCTAAGCTCCACCGCTTTCCTCGATCCAACAACTTTTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCTCCGTTTGAAGGAGATCGGCGTTTCCGATGTTCGGATCGATCTCGCCGAAGAGCTTTCCCGCCCTGTGTACTATCGGAAGATGGTTCTACCGCTCTTCGATTCGGTTCGGCGCTCCGGCGTCGCCGTCGACGGCGCTGAGAAGCTCGGAACAGGTGCGATCTAG

Coding sequence (CDS)

ATGTCCACAAGCCAGAACCACCTCCTCCGCCTCGTTCTTTCCTGCCGGAAAATCACTGCTCAGGTCACCAATCCGGCCACCTCCTCCATCATCGCCATGGCCTCCTCCTCCGAGCAGGAATTCGTTGCCTATTACCGCTCTAAGCTCCACCGCTTTCCTCGATCCAACAACTTTTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCTCCGTTTGAAGGAGATCGGCGTTTCCGATGTTCGGATCGATCTCGCCGAAGAGCTTTCCCGCCCTGTGTACTATCGGAAGATGGTTCTACCGCTCTTCGATTCGGTTCGGCGCTCCGGCGTCGCCGTCGACGGCGCTGAGAAGCTCGGAACAGGTGCGATCTAG

Protein sequence

MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEKLGTGAI

Homology

[Close]

BLAST of Spg015290 vs. NCBI nr
Match: XP_004140885.1 (uncharacterized protein LOC101204363 [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 6.2e-58
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS +QNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVGEKLG RLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSV+RSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGAI 127
           LGTG+I
Sbjct: 121 LGTGSI 126

[Close]

BLAST of Spg015290 vs. NCBI nr
Match: XP_038884098.1 (uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida])

HSP 1 Score: 230.7 bits (587), Expect = 6.9e-57
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS SQNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSV+RSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 125
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of Spg015290 vs. NCBI nr
Match: XP_038884095.1 (uncharacterized protein LOC120075027 isoform X2 [Benincasa hispida])

HSP 1 Score: 230.7 bits (587), Expect = 6.9e-57
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS SQNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSV+RSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 125
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of Spg015290 vs. NCBI nr
Match: XP_038884096.1 (uncharacterized protein LOC120075027 isoform X3 [Benincasa hispida])

HSP 1 Score: 230.7 bits (587), Expect = 6.9e-57
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS SQNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSV+RSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 125
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of Spg015290 vs. NCBI nr
Match: XP_038884099.1 (uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida])

HSP 1 Score: 230.7 bits (587), Expect = 6.9e-57
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS SQNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSV+RSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTG 125
           LGTG
Sbjct: 121 LGTG 124

[Close]

BLAST of Spg015290 vs. ExPASy TrEMBL
Match: A0A0A0KE39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042360 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.0e-58
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS +QNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVGEKLG RLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSV+RSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGAI 127
           LGTG+I
Sbjct: 121 LGTGSI 126

[Close]

BLAST of Spg015290 vs. ExPASy TrEMBL
Match: A0A5D3BWW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00630 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.8e-56
Identity = 116/126 (92.06%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS +QNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVG KLG RLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSV+RSG+AVDG EK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGTGAI 127
           LG G+I
Sbjct: 121 LGKGSI 126

[Close]

BLAST of Spg015290 vs. ExPASy TrEMBL
Match: A0A1S4DVU4 (uncharacterized protein LOC103488672 OS=Cucumis melo OX=3656 GN=LOC103488672 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.8e-56
Identity = 116/126 (92.06%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS +QNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SKVASRVG KLG RLKEIGVSDVRIDLAEELSRP+YYRKMVLPLFDSV+RSG+AVDG EK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGTGAI 127
           LG G+I
Sbjct: 121 LGKGSI 126

[Close]

BLAST of Spg015290 vs. ExPASy TrEMBL
Match: A0A6J1JZ79 (uncharacterized protein LOC111488745 OS=Cucurbita maxima OX=3661 GN=LOC111488745 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.1e-55
Identity = 115/126 (91.27%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS +QNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SK+ASRVGEKLG RLKEIGVSDVRIDLAEELSRPVYYR  VLPLFDSVRRSGVAV+GAEK
Sbjct: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNRVLPLFDSVRRSGVAVNGAEK 120

Query: 121 LGTGAI 127
           LG+GAI
Sbjct: 121 LGSGAI 126

[Close]

BLAST of Spg015290 vs. ExPASy TrEMBL
Match: A0A6J1EVG7 (uncharacterized protein LOC111436340 OS=Cucurbita moschata OX=3662 GN=LOC111436340 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 114/126 (90.48%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 1   MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS +QNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEK 120
           SK+ASRVGEKLG RLKEIGVSDVRIDLAEELSRPV YR  VLPLFDSVRRSGVAV+GAEK
Sbjct: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120

Query: 121 LGTGAI 127
           LG+GAI
Sbjct: 121 LGSGAI 126

[Close]

BLAST of Spg015290 vs. TAIR 10
Match: AT2G43310.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 171.0 bits (432), Expect = 6.0e-43
Identity = 85/119 (71.43%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 3   TSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSK 62
           T ++HLL+LVLSCRKITAQVT P +S+IIAMASSSEQEF+A  R+ L+RFP SN+FWDSK
Sbjct: 4   THRHHLLQLVLSCRKITAQVTQPGSSTIIAMASSSEQEFLAKSRANLYRFPHSNHFWDSK 63

Query: 63  VASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRRSGVAVDGAEKL 122
            ASRVGEKLGLRL+E+GV  V ID  EE+SRP+++RK VLPLFDSVRR+G+ VDG E+L
Sbjct: 64  TASRVGEKLGLRLRELGVDVVSIDADEEISRPIHHRKRVLPLFDSVRRTGIRVDGTEQL 122

The following BLAST results are available for this feature:

BLAST of Spg015290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140885.1	6.2e-58	95.24	uncharacterized protein LOC101204363 [Cucumis sativus]	[more]
XP_038884098.1	6.9e-57	95.16	uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]	[more]
XP_038884095.1	6.9e-57	95.16	uncharacterized protein LOC120075027 isoform X2 [Benincasa hispida]	[more]
XP_038884096.1	6.9e-57	95.16	uncharacterized protein LOC120075027 isoform X3 [Benincasa hispida]	[more]
XP_038884099.1	6.9e-57	95.16	uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida]	[more]

BLAST of Spg015290 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE39	3.0e-58	95.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042360 PE=4 SV=1	[more]
A0A5D3BWW4	4.8e-56	92.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DVU4	4.8e-56	92.06	uncharacterized protein LOC103488672 OS=Cucumis melo OX=3656 GN=LOC103488672 PE=...	[more]
A0A6J1JZ79	4.1e-55	91.27	uncharacterized protein LOC111488745 OS=Cucurbita maxima OX=3661 GN=LOC111488745...	[more]
A0A6J1EVG7	1.3e-53	90.48	uncharacterized protein LOC111436340 OS=Cucurbita moschata OX=3662 GN=LOC1114363...	[more]

BLAST of Spg015290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43310.1	6.0e-43	71.43	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 2..114 e-value: 6.1E-9 score: 38.4
None	No IPR available	PANTHER	PTHR12899:SF14	F14B2.25/F14B2.25	coord: 3..123
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 3..112
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 3..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015290.1	Spg015290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome