Spg014989 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg014989
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold3: 40448124 .. 40451246 (+)
RNA-Seq ExpressionSpg014989
SyntenySpg014989
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCATGGGACAATCTTGGGCTCGTTGAAATACGTCTTACCTGTCATTGTCAACAATTTGTGAGACCCCCAATAGTGAAGACTTACTCGAGGAAGGGCAAGAAGGTAATTACGGAAAGGAAAGGCAATTAGGGGGGACCGTTAGTGGTAGTGGATGGCTCAACTAGTACAGATGGCAGAAAAATGCTGAGGACCTGCTTTTGTATGGGATCGTGGGATAGAGAGGAATGTGTGGAATTTTAGACAGGGATTTGTCTTGGAGAGTTTATGCAGCGCTCTCGAATCTTTCGGGGTGTTCTAGTTCGTTTATGGTGTTGTTTTCCTATGTTGCTTCCTTTATCTTATGAACTATCACGGTATATTGCTCTACACATCAATATAACGTCGAAATTGCTATTGTATCGTGTATGTGCTTGGTATGTTTGTTGATTGCAGGTTGTTCCTAGTGGGATACCTACCAATTTGGCATTACAACACGTCATCCTAGGGAGAACACGCAAAATGGTGCAAAAAAAAAAATAGAAGAGAGAGTAGAGATTACGAAGAAAGCCATCAGTGGACTGCAGCACTCGGTTCAACGAATAGAGAAAAGCATGGAAAGGATGACTATAATGATGGCCGATTTGATGGTGAGCAAAAGGAAGACCGCCTCCACCATTACCAAAGGTTCACCTTAGAAACTGAAAGAGAATGAAGAAGTTGAAGACATTCCCGAGAAAGCGGGATCCAAAGAAGGGGAGGTTGTACCACTGAAAACAGGGGGTGACAGAAGCAAGTTCAAACAACTTGAGATGTCGATTTTTTATCGAGGTTAATCTTGACTCATGGTTATTCAGGCTTAAGATACTTTGAGATACATCAACTCACAAAATGGGAGAAGATCACGACAGCGATTATCAGCTTTGACGAGGACGTTGTGGATTGGTATCGCTAGTCTCATAATCACAAGAAGATCAAGTCCTGAGATGATTTGAAGGGAAGAATGTTCAAATGGTTCAGGCCATCTCAGGAAGGGAGCCTGTGCGCACGATCTTGGCCATTAAATAGGAAGATATTGTAGCAGGGTAGATCAAGAAATTTTAAGTGTATTTCGCGCCATTACCAGAGCTGCCGGAGACGATCCTAGAGAACACGTTTTTAAATGGGTTGAAACCTGTCGTTAGGACAGGAGTGGTAAGCAGAAGACCTATTGGGCAAGAAGAGATCATGACCCAAGCCCAACTAATTGAGGATAGAGATATAGCAATCCAGCTCGCAATTGATACCATGGGCCAAGGATCCATGCTAGGAACCGCGAACCCAGGAGGTAAAGCTAACCCTAAACATGGGGATCCAACCCCAATTCGAGCGATAACTTAGCCTGAAAAAAGATACCAAGACGAAAGGAAACAGTGCACCAAAAGTTGTCAAACATCGAATTCCAATTAAAGCGGGAAAAGGGATCATGTTTTAGGTGTGACAAGAAATATAGCCTAGGCCATCGTTGCAAGAGTAAAAAGGTAAGAGAGCTGAGGGTCCTTTTAGTGAACAACGTTGAAGAAATCGAGTTGTTGAAAGGAGCTCCTTCTGAGGACGAAGAAGGTTCCTTTCCCTGAAGTGGGAGCGTTAGAGGAGCTTGATTTAAAGTCTGTGATTGGCTTCTCAACTCCGGGAACCATGAAGGTAAAGGGGAGACTCGGGGAAAGAGAGGTAGTGGTGCTCATTGACTGCGAAGCAACACACAATTTCTTGTCGCAGAGGGTAGTCGAGAAACTTCAGCTGCCAGTAACTAAGACATCCAACTACAAAATTGTTAATGGAAACGGAGTGGCTACGAAAGGGAAGAGAGTGCAAGGTTGTGGTGGTGTCCCTCCCTAAGTTGACAATCACCGAGGATTTTCTACCTCTGGAGTTGGGAAGTGTGGATCTGATATTGTGAATGCAGTGGTTCCACACCATGGAAGCGATGGAGGTTGACTGGACAAAATTAACGATGACATTCGAGTTAGGGAACCGTAAGGTGACTATCAGAGGTAATCCTTCATTAACTAAAGCGAAAGTATCTTTGAAGATGTTAGCTAAGTCATGGCAACTGGCTGACTAGGGATTTCTCATGGAACTAAGAGATTTGTCCATTAACAAATCAGAGAAGTCGGAAAAGGAAACCAAGGAAGAACTTCCTCAGGCGGTCCAGGATCTGTTGAGGGGGTATGAGGATACTTTTCATCTACCTTTTGGCTTACCACCAAAAAGGGTCGTGGATCATTAGATGGTGTTGAAAGACAAGACAAGGCCCATCAACATACGACCATATAAGTATGCTCACATCCAGAAGTCGAAAAATCAAAGATTGATTAACGAGATGTTGGCTTGAAGTCAAGGTTGGTAAAAGAGACGTTTGGCTTGGGACTTCAAATCTAAAATCAAAATATCTTGCCCTCTACCATCTTTCCCTTAAAAAGGAAGCTTTCATTGCTGAATTATGGAACCCATTCAAGAGGCTTGGAATTTTCACCTGAGAAGAAATCTAAATGACTCAGAATCATTGGAATGGGCTTTATTATCTCACCAACTATCAGCTTTCTCCTTCGCACACAAGGAAGACAAATGGATTTGGCCTCTAGACAAAACAAGAATTTTCTCCACGGGATCTCTTACCAAGAAGCTAGCCTCTGGTTTAAATCCCACAATTTTTTATTTCAACAATTAGCTATGGAAAGGTCCAATGCCAAAAAAGGTCAAATTCTTCATTTGAGAGCTTAGCCATGCATGTACCAATACTTTTTTTTTTTTTTATAATAAACCTAGCTTTCATTGAGAAAAAAATGAAAGAATACAAGGGCGAACAAAAAAACCAGCCCACAAAAAACAAGAGGGAGGCCCCCTTAGAAAAAGGGCCTCCAATCCAAAAGGATGAGACCCATGGAATAATTACAAAATAAACACGTCACTAACACCCAAAGAGAAACATTATATTTAACAAGGGACCAAACCTCAACAGTATCCCTCTCCAACCCTCTTCCGACACTGTTCGGCAAAAGTCCCCTTGGATTACTTTATCTTCAAGTTGTTGTTGCATGTTTTATCAGAGCCATGAATCACAGATCCACCTTTTCAACAGCTGTTTATTTGCATTCTCCA

mRNA sequence

ATGCCTGCATGGGACAATCTTGGGCTCGTTGAAATACGTCTTACCTGTCATTGTCAACAATTTGTGAGACCCCCAATAGTGAAGACTTACTCGAGGAAGGGCAAGAAGTGGGATACCTACCAATTTGGCATTACAACACGTCATCCTAGGGAGAACACGCAAAATGGTGCAAAAAAAAAAATAGAAGAGAGAGTAGAGATTACGAAGAAAGCCATCAGTGGACTGCAGCACTCGGTTCAACGAATAGAGAAAAGCATGGAAAGGATGACTATAATGATGGCCGATTTGATGGTGAGCAAAAGGAAGACCGCCTCCACCATTACCAAAGGCTTAAGATACTTTGAGATACATCAACTCACAAAATGGGAGAAGATCACGACAGCGATTATCAGCTTTGACGAGGACGTTGTGGATTGGACAGGAGTGGTAAGCAGAAGACCTATTGGGCAAGAAGAGATCATGACCCAAGCCCAACTAATTGAGGATAGAGATATAGCAATCCAGCTCGCAATTGATACCATGGGCCAAGGATCCATGCTAGGAACCGCGAACCCAGGAGATTTGTCCATTAACAAATCAGAGAAGTCGGAAAAGGAAACCAAGGAAGAACTTCCTCAGGCGGTCCAGGATCTGTTGAGGGGAGCCATGAATCACAGATCCACCTTTTCAACAGCTGTTTATTTGCATTCTCCA

Coding sequence (CDS)

ATGCCTGCATGGGACAATCTTGGGCTCGTTGAAATACGTCTTACCTGTCATTGTCAACAATTTGTGAGACCCCCAATAGTGAAGACTTACTCGAGGAAGGGCAAGAAGTGGGATACCTACCAATTTGGCATTACAACACGTCATCCTAGGGAGAACACGCAAAATGGTGCAAAAAAAAAAATAGAAGAGAGAGTAGAGATTACGAAGAAAGCCATCAGTGGACTGCAGCACTCGGTTCAACGAATAGAGAAAAGCATGGAAAGGATGACTATAATGATGGCCGATTTGATGGTGAGCAAAAGGAAGACCGCCTCCACCATTACCAAAGGCTTAAGATACTTTGAGATACATCAACTCACAAAATGGGAGAAGATCACGACAGCGATTATCAGCTTTGACGAGGACGTTGTGGATTGGACAGGAGTGGTAAGCAGAAGACCTATTGGGCAAGAAGAGATCATGACCCAAGCCCAACTAATTGAGGATAGAGATATAGCAATCCAGCTCGCAATTGATACCATGGGCCAAGGATCCATGCTAGGAACCGCGAACCCAGGAGATTTGTCCATTAACAAATCAGAGAAGTCGGAAAAGGAAACCAAGGAAGAACTTCCTCAGGCGGTCCAGGATCTGTTGAGGGGAGCCATGAATCACAGATCCACCTTTTCAACAGCTGTTTATTTGCATTCTCCA

Protein sequence

MPAWDNLGLVEIRLTCHCQQFVRPPIVKTYSRKGKKWDTYQFGITTRHPRENTQNGAKKKIEERVEITKKAISGLQHSVQRIEKSMERMTIMMADLMVSKRKTASTITKGLRYFEIHQLTKWEKITTAIISFDEDVVDWTGVVSRRPIGQEEIMTQAQLIEDRDIAIQLAIDTMGQGSMLGTANPGDLSINKSEKSEKETKEELPQAVQDLLRGAMNHRSTFSTAVYLHSP
Homology
[Close]
BLAST of Spg014989 vs. NCBI nr
Match: KAA0066613.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK14203.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-05
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 0 

Query: 83  EKSMERMTIMMADLMVSKRKTAS-TITKGLRYFEIHQLTKWEKITTAIISFDEDVVDWTG 142
           E S +R     A+++VS  K     + +  RYF+IH+LT+ EK+  + ISFD+  +DW  
Sbjct: 101 EISGDRSKFKKAEMLVSTGKDPDFWLFRAERYFQIHKLTESEKMLVSTISFDDPALDWAK 160

Query: 143 VVSRRPIGQEEIMTQAQLIEDRDI 166
           V   RP G  E+M  AQL+E+R+I
Sbjct: 161 VAFCRPKGLTEMMQLAQLVENREI 184

[Close]
BLAST of Spg014989 vs. NCBI nr
Match: KAA0066520.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK06118.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-04
Identity = 35/119 (29.41%), Postives = 67/119 (56.30%), Query Frame = 0 

Query: 57  AKKKIEERVEITKKAISGLQHSVQRIEKSMERMTIMMADLMVSKRKTASTITKGLRYFEI 116
           A+K  +ER+E T++ I  L+  +  + K +ER+     ++  ++  + S + +    FEI
Sbjct: 2   AQKLAKERLETTEREIRELKEIIMGLAKGVERLA---KEVKENRENSESRVYRAEHSFEI 61

Query: 117 HQLTKWEKITTAIISFDEDVVDWTGVVSRRPIGQEEIMTQAQLIEDRDIAIQLAIDTMG 176
           + LT+ +K+  A++SF +D      V+S  P  +E+   +AQL+ D  IA++LA+   G
Sbjct: 62  NDLTETKKVKVAVVSFAQD-----EVMSCHPTSREQCRKEAQLVNDHKIALKLALSEFG 112

[Close]
BLAST of Spg014989 vs. NCBI nr
Match: TYJ98820.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 7.3e-04
Identity = 49/209 (23.44%), Postives = 90/209 (43.06%), Query Frame = 0 

Query: 16  CHCQQFVRPPIVKTYSRKGKKWDTYQFGITTRHPRENTQNGAKKKIEERVEITKKAISGL 75
           C C  ++ P   +  +    + +  + G+ TR         A++ +EER E T+K + GL
Sbjct: 13  CCCSLWIFPAHCEELNLNKLESEPRKLGVITRAM-------AQRVLEERTEGTEKEVVGL 72

Query: 76  QHSVQRIEKSMERMTIMMADLMVSKRKTASTITKG------------------------- 135
           +  +  ++KSM+R+T  M +    K++  S  + G                         
Sbjct: 73  KEMMLEMKKSMDRLTEEMRENHSYKKREESGTSDGSVMKLKGKMEEFDGTDEGTQGTLDR 132

Query: 136 -----------------------LRYFEIHQLTKWEKITTAIISFDEDVVDWTG-VVSRR 176
                                   ++FEI+ L   EK+  A++SF +D +     V+SR 
Sbjct: 133 SKYKKLEMPMFLGENPKSWVYRAKQFFEINNLPATEKVKVAVVSFGQDELALQAEVISRH 192

[Close]
BLAST of Spg014989 vs. ExPASy TrEMBL
Match: A0A5A7VEZ7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00250 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-05
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 0 

Query: 83  EKSMERMTIMMADLMVSKRKTAS-TITKGLRYFEIHQLTKWEKITTAIISFDEDVVDWTG 142
           E S +R     A+++VS  K     + +  RYF+IH+LT+ EK+  + ISFD+  +DW  
Sbjct: 101 EISGDRSKFKKAEMLVSTGKDPDFWLFRAERYFQIHKLTESEKMLVSTISFDDPALDWAK 160

Query: 143 VVSRRPIGQEEIMTQAQLIEDRDI 166
           V   RP G  E+M  AQL+E+R+I
Sbjct: 161 VAFCRPKGLTEMMQLAQLVENREI 184

[Close]
BLAST of Spg014989 vs. ExPASy TrEMBL
Match: A0A5D3C4H6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00070 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-05
Identity = 35/119 (29.41%), Postives = 67/119 (56.30%), Query Frame = 0 

Query: 57  AKKKIEERVEITKKAISGLQHSVQRIEKSMERMTIMMADLMVSKRKTASTITKGLRYFEI 116
           A+K  +ER+E T++ I  L+  +  + K +ER+     ++  ++  + S + +    FEI
Sbjct: 2   AQKLAKERLETTEREIRELKEIIMGLAKGVERLA---KEVKENRENSESRVYRAEHSFEI 61

Query: 117 HQLTKWEKITTAIISFDEDVVDWTGVVSRRPIGQEEIMTQAQLIEDRDIAIQLAIDTMG 176
           + LT+ +K+  A++SF +D      V+S  P  +E+   +AQL+ D  IA++LA+   G
Sbjct: 62  NDLTETKKVKVAVVSFAQD-----EVMSCHPTSREQCRKEAQLVNDHKIALKLALSEFG 112

[Close]
BLAST of Spg014989 vs. ExPASy TrEMBL
Match: A0A5D3BGA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00080 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-04
Identity = 49/209 (23.44%), Postives = 90/209 (43.06%), Query Frame = 0 

Query: 16  CHCQQFVRPPIVKTYSRKGKKWDTYQFGITTRHPRENTQNGAKKKIEERVEITKKAISGL 75
           C C  ++ P   +  +    + +  + G+ TR         A++ +EER E T+K + GL
Sbjct: 13  CCCSLWIFPAHCEELNLNKLESEPRKLGVITRAM-------AQRVLEERTEGTEKEVVGL 72

Query: 76  QHSVQRIEKSMERMTIMMADLMVSKRKTASTITKG------------------------- 135
           +  +  ++KSM+R+T  M +    K++  S  + G                         
Sbjct: 73  KEMMLEMKKSMDRLTEEMRENHSYKKREESGTSDGSVMKLKGKMEEFDGTDEGTQGTLDR 132

Query: 136 -----------------------LRYFEIHQLTKWEKITTAIISFDEDVVDWTG-VVSRR 176
                                   ++FEI+ L   EK+  A++SF +D +     V+SR 
Sbjct: 133 SKYKKLEMPMFLGENPKSWVYRAKQFFEINNLPATEKVKVAVVSFGQDELALQAEVISRH 192

The following BLAST results are available for this feature:
BLAST of Spg014989 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066613.16.6e-0540.48reverse transcriptase [Cucumis melo var. makuwa] >TYK14203.1 reverse transcripta... [more]
KAA0066520.11.1e-0429.41retrotransposon protein [Cucumis melo var. makuwa] >TYK06118.1 retrotransposon p... [more]
TYJ98820.17.3e-0423.44retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Spg014989 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg014989 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VEZ73.2e-0540.48Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G... [more]
A0A5D3C4H65.4e-0529.41Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BGA53.5e-0423.44Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg014989 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..204

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg014989.1Spg014989.1mRNA