Spg014743 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg014743
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Location	scaffold3: 46230767 .. 46232874 (-)
RNA-Seq Expression	Spg014743
Synteny	Spg014743

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCACAAAGCTATTTTCAGAGAAAGTTCAGTTTCAGAAAGAAAAAAAGGAAAAAGAAGAACGATGAATGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCCGAGGGCGCCAAGAAGTAAATTCTCGAAACCCTAGCCTTTTCATCATCTCTTTAATCGTACGACCGATTTTGCTTTCTTTCTATATGCACCACCACCGTCTCTGTTGCGATTTCTATACCGGACGTCCATTTTGTTGAACATTGTAGGGTTTCATACGAGAGAGACACGAAGATCATGAACGCGGCGACCTTTATATTGGAGAGAGAGGATCACACCATTGGAAACATCATCCGCATGTAGGGTTTTCTGTTAATTGGAGAGCTTATGGCGATTTTGATTAATTTCTTCGTTCTTGTTTATTGATGTGTGTGTGTGTGTGTATTTTTTCTGGCCTGAATAATCAGGCAACTTCACAGAGACGATAATGTGCTGTTTGCTGCGTATCAGCTTCCTCATCCTCTAAAGTACAGAATACTTGTCCGGGTTAGTACTTCGATTGTTTTTACGTTGTGTAGACGTTGTTCTATTGCATGAATGGTTAATTAAATAGCATTACGAGAATATTTGCAATGTTGCTGTTTGGTAATGGCAGATTATACTTTGGAGGAGATCGGCTGATTGAATTTTTAATGTAACTAGCGTTAATTTATTCTCAGGTTTATCTGTTATTTGAGCTAGTTTAGAGATTGCCAAGTTATCCTTGAGGGCTATCATCATAGGGAGGGAGTCAAACTGGAATGAGAGTTTGCTCGACTGGCACGGTAGAGCCAAAAAATTTCACAGGAAATGGAAAATTTTACCACCAACTTTTTTATGATGAAAACTTGAAATCGTTAACTTCTGTTTCTATAGTTTTCTCAATATAATATGAACTGAGGGCAATTGTCCCTCCTTTATTCTTCACTCCACCCTTGCGATTGGAGTTCAAATAAACAATTTGCCCTGGAGGAAGTGAAATGTAGTTGAATGCTAATTTCCTTTTCCGAGCAGCGCAACATTTTCATTTTTCCCAACAGAAAGATCATGAACATTAAAGATTTTGAAATTCCTTGAGGATGCAGATATTTTTCAGATACTGATTGGTTTTGAATACTACAATTCTAGTAGCTTTATTATGGTCTGTTCTTGATTGAATTACAATCGACCATAAAGTTCTGATTGAAGTTCTTTTATCATTATTCTTTCAATTTTACTGTTCTGCAGATACACACGGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACCTTTTGAAATTTGAGCTCGAGGTAATGCTTTCACTCCCCCTTGACCATTTGTCTGCAATTTGGATGATGTGAGTATGATTTTGTTCTTTTTCTTATTCATTATGATGGAATCCAGTCCTCCGCTTTTGCTCTTGAAGGCTTACACCTTTTTTTTTTTGTCTTTGATGCTAATCCTTGAATTTTGCATAAAAATGTATGGTCTTGTTAAATGTTCACATTACATTTAATATAGATCTCAGATCACTTATTTTTAAACTCTATAACCTAATGGGATAAATGTATTTTACAGTACAAGTTCATTTCAAATTATTTGAAGTTTTTGTTAAATGTACATAAGAATTTAATAGTTAAAGATTAAAAAAGAAAGGGCAACAAGAAAAAGAAAAAAGGGGATTTTTATGCTAATTTTAAGGGATAAAAAGTTACAAGTCTAAAATTTAAAAGGAAAAAAAAAAAAGGATCATGACATCATTACCTTTGTTATTTACATTCGTGAATTGCTTGATGCAGGGCGAACTTTCAAGATTCTCGAGGACCTATTAGTTTGCCTTCAAAGAAAACCAGGTGGAAGTTCTGTTATCTGACCATTATAGAATTTCGATTCTTTGCATATGTGCTTCAACTCAATAAATTCGAGTTGGAAATGGAATGCCAAAAATAAGATTTACAGCCCTTGTATTCGTTTGCATTCTTTCATTTTTTTCGATGACAGTTCAAAATTTTATTATAAAAAAAGACGATCATTTTCCGTTAGTATTAATTAGAAAATAAACTATATTTAGGTTGGG

mRNA sequence

ATGAATGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGACACGAAGATCATGAACGCGGCGACCTTTATATTGGAGAGAGAGGATCACACCATTGGAAACATCATCCGCATGCAACTTCACAGAGACGATAATGTGCTGTTTGCTGCGTATCAGCTTCCTCATCCTCTAAAGTACAGAATACTTGTCCGGATACACACGGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACCTTTTGAAATTTGAGCTCGAGGGCGAACTTTCAAGATTCTCGAGGACCTATTAG

Coding sequence (CDS)

ATGAATGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGACACGAAGATCATGAACGCGGCGACCTTTATATTGGAGAGAGAGGATCACACCATTGGAAACATCATCCGCATGCAACTTCACAGAGACGATAATGTGCTGTTTGCTGCGTATCAGCTTCCTCATCCTCTAAAGTACAGAATACTTGTCCGGATACACACGGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACCTTTTGAAATTTGAGCTCGAGGGCGAACTTTCAAGATTCTCGAGGACCTATTAG

Protein sequence

MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY

Homology

[Close]

BLAST of Spg014743 vs. NCBI nr
Match: XP_022150995.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like [Momordica charantia])

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNI+RMQLHRDDNVLFAA
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY 117
           YQLPHPLKYRIL+RIHTASQSSPMQAYNQA+NDLDKELD LKFELE ELSRFSR Y
Sbjct: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELESELSRFSRAY 116

[Close]

BLAST of Spg014743 vs. NCBI nr
Match: KAG6593293.1 (DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224.6 bits (571), Expect = 4.5e-55
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAA
Sbjct: 16  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 75

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY 117
           YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+LK+ELEG  SRFSRTY
Sbjct: 76  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY 131

[Close]

BLAST of Spg014743 vs. NCBI nr
Match: XP_022960210.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita moschata] >XP_023514374.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG7025644.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.6 bits (571), Expect = 4.5e-55
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAA
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY 117
           YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+LK+ELEG  SRFSRTY
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY 116

[Close]

BLAST of Spg014743 vs. NCBI nr
Match: XP_004135939.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus] >KAE8646398.1 hypothetical protein Csa_016830 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 4.5e-55
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNI+RMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY 117
           YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+LK+ELEGE+SRFSR Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116

[Close]

BLAST of Spg014743 vs. NCBI nr
Match: XP_023004699.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAA
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY 117
           YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+LK+ELEG  SRFSR+Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRSY 116

[Close]

BLAST of Spg014743 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.7e-49
Identity = 91/116 (78.45%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFA 
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY 117
           YQLPHPLKY+I+VRIHT SQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Spg014743 vs. ExPASy Swiss-Prot
Match: O08740 (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-24
Identity = 50/109 (45.87%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA 
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGEL 110
           Y++PHPL+++I++R+ T    SP +A+  AI DL  EL LL+    G +
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAI 109

[Close]

BLAST of Spg014743 vs. ExPASy Swiss-Prot
Match: Q86JJ5 (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-24
Identity = 49/102 (48.04%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MN PDR+E FV+P+GAKKV+  RDTKI NA+ F + +EDHTIGN+IRMQL  D +++FA 
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLK 103
           Y++PHPL++ + +RI T + ++P++   +++  L +E   L+
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLE 102

[Close]

BLAST of Spg014743 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.3e-24
Identity = 49/102 (48.04%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA 
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLK 103
           Y++PHPL+++I++R+ T    SP +A+  AI DL  EL LL+
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE 102

[Close]

BLAST of Spg014743 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.3e-24
Identity = 49/102 (48.04%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA 
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLK 103
           Y++PHPL+++I++R+ T    SP +A+  AI DL  EL LL+
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE 102

[Close]

BLAST of Spg014743 vs. ExPASy TrEMBL
Match: A0A6J1DA06 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Momordica charantia OX=3673 GN=LOC111019017 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 7.6e-56
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNI+RMQLHRDDNVLFAA
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY 117
           YQLPHPLKYRIL+RIHTASQSSPMQAYNQA+NDLDKELD LKFELE ELSRFSR Y
Sbjct: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELESELSRFSRAY 116

[Close]

BLAST of Spg014743 vs. ExPASy TrEMBL
Match: A0A6J1H8G6 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461018 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.2e-55
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAA
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY 117
           YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+LK+ELEG  SRFSRTY
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY 116

[Close]

BLAST of Spg014743 vs. ExPASy TrEMBL
Match: A0A6J1KX24 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497917 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.4e-55
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAA
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY 117
           YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+LK+ELEG  SRFSR+Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRSY 116

[Close]

BLAST of Spg014743 vs. ExPASy TrEMBL
Match: A0A1S3CFN3 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=3656 GN=LOC103499938 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNI+RMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY 117
           YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+LK+ELE E+SRFSR Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY 116

[Close]

BLAST of Spg014743 vs. ExPASy TrEMBL
Match: A0A6J1H6T9 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461018 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 109/116 (93.97%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAA
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY 117
           YQLPHPLKYRILVR  TASQSSPMQAYNQAINDLDKELD+LK+ELEG  SRFSRTY
Sbjct: 61  YQLPHPLKYRILVR--TASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY 114

[Close]

BLAST of Spg014743 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 196.4 bits (498), Expect = 1.2e-50
Identity = 91/116 (78.45%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFA 
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY 117
           YQLPHPLKY+I+VRIHT SQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Spg014743 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 180.6 bits (457), Expect = 7.0e-46
Identity = 91/146 (62.33%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAA 60
           MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFA 
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YQLPHPLKYRILVR------------------------------IHTASQSSPMQAYNQA 117
           YQLPHPLKY+I+VR                              IHT SQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

The following BLAST results are available for this feature:

BLAST of Spg014743 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150995.1	1.6e-55	93.97	DNA-directed RNA polymerases II, IV and V subunit 11-like [Momordica charantia]	[more]
KAG6593293.1	4.5e-55	94.83	DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyros...	[more]
XP_022960210.1	4.5e-55	94.83	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita ...	[more]
XP_004135939.1	4.5e-55	93.97	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus...	[more]
XP_023004699.1	1.3e-54	93.97	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita ...	[more]

BLAST of Spg014743 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	1.7e-49	78.45	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
O08740	1.9e-24	45.87	DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j ...	[more]
Q86JJ5	2.5e-24	48.04	DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=4468...	[more]
Q32P79	4.3e-24	48.04	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]
P52435	4.3e-24	48.04	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J...	[more]

BLAST of Spg014743 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DA06	7.6e-56	93.97	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Momordica charantia...	[more]
A0A6J1H8G6	2.2e-55	94.83	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]
A0A6J1KX24	6.4e-55	93.97	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]
A0A1S3CFN3	1.1e-54	93.10	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=365...	[more]
A0A6J1H6T9	1.6e-53	93.97	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2 OS=Cucurbit...	[more]

BLAST of Spg014743 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	1.2e-50	78.45	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	7.0e-46	62.33	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..104
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..110
None	No IPR available	PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11	coord: 1..110
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 31..101 e-value: 8.6E-23 score: 79.9
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..115 e-value: 3.6E-46 score: 157.7
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 1..111
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 35..66
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 13..102 e-value: 3.19107E-46 score: 142.346

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg014743.1	Spg014743.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity