Spg014584 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg014584
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold3: 31577366 .. 31582630 (+)
RNA-Seq Expression	Spg014584
Synteny	Spg014584

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCATCCAAGAAAATCCTTTATTTGACTATTCTACTTCATCTTCTGAGCAAGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGGTTGAAGAGAGAGATTGTGAAATTGCCTCTCTAAAAAATCACATTGAAAGTCGTGATATCGCTGAATCAAGCCAAACACCCGCTGCAAAGAATAATGACAAAGGGAAGGCTATCATGCAAGAAAACCAGCCTCAGCATTCCACTTCAATTGCTTCGTTGTCCGTTCAGCAACTCCAAGATATGATTATGAGCTCCATTAGAGCTCAATATGGTGGACCTACTCAAAATTCTCTTATGTATTCCAAACCATACACTAAAAGAATTGACAACTTGAGGATGCCTACCAGGTTTCAACCTCCAAAATTTCAACAATTTGATGGAAAGGGGAATCCTAAGGCATATTGCTCACTTTGTTGAGACATGCGAGAATGCTGGGACTCGTGGAGATCTCCTAGTTAAACAATTCGTCCGAACCTTAAAGGGAAATGCCTTTGATTGGTATACTGATTTAGAGCCAGAGATGATCGATAGTTGGGAACAATTCGAAAGAGAGTTCCTAAATCGCTTTTACAGCACAAGGCGAACTGTCAGCATGACAGAACTCACAAATACAAAACAACGGAAAGATGAGCCTGTCATTGATTACATTAATCGTTGGAGAGCTCTGAGTCTTGATTGCAAAGATCGACTCACCGAATTATCCACTGTGGAAATGTGCATGCAAGGAATGCACTGGGAACTTCTTTATATATTGCAGGGCATAAAACCCAGCACCTTTGAAGAATTAGCAACTCGCGCTCATGACATGGAGCTAAGTATTGCTACTAGAGGGAATAAAGACTTTTCAGTCCCCGATGCGAAAAAGGAGAAGAAAGAAGTGAAGAGCACTGAGAAAATCTTGAAGGGTGCTATAAGGGAATCCATGGTCGTCAATACGACCCCCCTAAAGTTTACCTCTAACAGAAGAGAAAAGAAAATGGAGAAGCGTCAAAATGAAGGCGAGAAACGACGCCTAACTTTGAAAGAAAGACAAGAAAAAGTCTATCCTTTTCCGGACACTGACGTCCCAGATATGTTAGAGCAACTGTTGGAAAATAGACTTATCGAACTCCCTGAATGCAAACAACCCGAAGAGAGGGGAAAAGTAAATGATCCCAATTATTGTAAATATCACCGAGTCGTTAGTCATCCGGTGGAGAAATGTTTTGTGTTAAAGGAGTTAATCTTGAAGTTAGCTCAAGAAAAGAAAATCGAGCTAGATCTTGATGAAGTAGCTCAAACAAATCATGTCGCCATAGTAACTCATCCTAGCGTCCAACCACCTATAAGCTTACCTTATGATCAGAGAGGAAGCTTAATCCAATTTGGTACCTTCGATCCTATTATCGTTTGGTCTCAACCAGAGGCCCCAGGAAATGACTTCCCAGAAAGGACTCTCTACGATGAGGATCTTCAAGAAAACATTAGGCAAATTGAAGACGTAGATGGAGGCTGGACACTCGTAACCCGACGGAAGAACCAAAAGCAAAATTGGGTTCAGAAGAAATCTCGCTTGTTTCAAGAACACAAAAGAAAAAGCAAGTCTCGAAGGAAAAATGGGAAGAAGTATATGAGAAGGCTCAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAGTAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAATCAATCAAATTGTTACATGTCATGTCGTTAATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAAGCTGGAAGACTTGTCGTCCTTCAATATAGATGATTTACTGTCACTCCCTCAAGAGACCAAAAATACTCTTATTGAGGTGTTAAAGGATTGTAAACCATCTACTTCTCAGACAAATAATGTTGCTCCATGTTGCACATCCATAGCCTTTACCGATGAAGATCTACTACTTGGGTCGAAGCCTCATAATAGGCCTTTGTTTGTCTCAGGCTACATCAGAGAGCAAAAAGTTAGTCGAATTCTCATTGATGATGGTTCTGCTGTTAACATAATGCCCAAGTCTACCATGAACCAACTAGGCATTCTGATGCAAGAATTGTCAAATAGTAAGTTGGTAATTCAAGGATTTAACCAAGGCGGACAACGCGCGATTGGCATGATTCGCCTAGAGCTCATTATTGGAGATTTAAAGGCTAACACCCTATTTCATGTTATAGACTCTAGGACCACCTACACGTTGTTACTAGGTCGTCCCTGGATTCATGAAAATGGAGTAGTTACTTCCACGCTGCATCAGTGTTTTAAATTCCATCAAGATGGTATCAAGAAGGTTGATGCTGATACCAACCCCTTCTCAGAGGCTGAGTCTCATTATGCTGATGCAAAGTTTTATATGAAGAATGACAATGTGGGGGAAGCTATGCAGTCAGAAGTTTCTTTGATAAAAAGCAACAACAAACCTGAGCAACAAACAAGCACGGGAAAAGAGCTTAATGAAAAAGCAGAAACTTCTCAGAAAAGCAAGGTATCTCTAAGCCAAACAAAAGCTGAAGTGGCGAAAAATGAGAAGGTACTATGTTCAGAAGAGAAGAAGACAAACGCTCCTGTCTTGTGCTATGTTCCCTTATCTCGACGCAAGAAGGGTGATTCGCCATTTGCAGAATGCTCCAATAATTTAAGAGTTGGCGACATTGAAATTTTGAAAGAGAGTTTTATCACACCTCTTACAAAGATATCCAAACAAGAGGTCAAAGACAAACAAGTAGAAGCAACTCTGCCTGATAAACGAACAGAATAGGGGTTTTATCCTAAAGCATACAAACTCTTGGCAAAGGCAGGTTATGATTTCACAGCGCATACTGAGTTTAAAAGTTTACGGATCTTTGACCAAAGGCCTGAACTTTCCTCAACACAGAAGAAGCTTCAAAAAGAGGGATATGCTATACCCATTTCAAGAGCTGGTCTTGGATATAAATCTCCTGAGTCGGTTCGAATCACAAGAAAAGGGAAAGCAAAAGTTGCTGATACGCTTCACATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGAACTTCTGCATTTGATCGCATTGGACCGTCGGTTACACGATCCTCAGTTTTTCAAAGACTGAGTACAGCTGCAATAGAAGATGAAAGTCAACATCCAACTTATGGCTCCACACGACCTTCGGCTTTCCAAAGATTAAGTATGGCTTCTGAAGAAAAAGAAAATGTGCATTCAACTCCTACCACACGGCTATCAGCTTTCCAAAGGTTGAGTGTAGCCACAAAAAGAAGTAAAGAACGGTCCCCTATATCAGTTTCTAACATAACAGAAACTCCAATCAAGACAAAGGGTGATGAGAAAATTCGTAGCGTTGTCCCCTCACGAATGAAGAGAAAATTGCTTGTTTCTGTAAATACAGAGGGTTCGTTAAAAATAAAGCGACATGATATTATTATCACAAGACCGAAGAGAAAAGCCCTGATGATGAAAAAAGACACAGTCGTATGCTACCACATCACCACAGAGGAAGAAACGGACCCTGAAACGTCTGAAGAAGATGAAAGTTCCTTAAAAAAATTCTATGCATGAAATGTAAATACTCCTTATCATAAGAGTCTAAACTACATGATACTCCTGGCCCGCATGAGTTAAAAAGGTGAACGGCACAAAAAAAAATCAAATTTGTATATTGAACTACGTTATGACTTGATCCCTTCCCATTTGAAGGGTACGTAGGCAGCTTAAGAATAAAAAAAAAACTTAAGTTCAGTCAAAGCAATAAAAAGGGAACATTTTGTGTAGAAGATAAAATTTTGAACTTTTATTATGGCATAGACAAAGGAAGAATAAATGTTTGATACAATGCATTGGAAGAGTTAAAAAAAAAAAAAAAAAAGTCTTACAGGAGACAAACCTTAAGAAAAATAAAAAGAATTATGGCTATGAATGGAATTCTAGCTCTTTATTTAATCTAGGAAACATCAATTGGTGTATTTACATCTAATCTAGAAAACAAAGGGGGCAATCAAGTCAAGCCATCCACTTGAAGTTCCTCAATTCTTCACGTATGTCCTTTAAGTTTTTTACGAGCCATGGCCAAAGACTTAGCATATTCATCAGTCATGACAGAGGCACACTCAATATTGGTGATCTCTTCACGGACTTTGGTAACCTCGAGTCTCTGTTGCTTCAAAGTCTTCTCCTCCATCACAAATCAAATTGGAAAGCCTCTCATGCTCGACTAACGTTGTCTCAGGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTCGAGTGTGTCATTCAAGGCTTCATTTGTCTCAAAGTACAAGTTCAAGCTTTGCTCGTTTCAAATTGCAGTTCGAGTTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTCGCTCGTTTCAAGTTCCAGTTCAATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATAACTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGCTCCTTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTGCACTCGTTTCAAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTCTAAGTTCAAGTTCGAGGCTTCGCTCGTTTCAAGTTCAAGTTCGAGCATTCCTCACTACAAGTTCTTCAAGTTCCAGGTCCATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATAACTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGCTCGTTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGTTTCGATCGTTTCAAGTTCAAGTTCGAGCATTCCTCACTGCAAATACTTCAAGTTCCAAGTCAATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATAACTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGCTCATTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTCGCTTGGTTTCAGTTTGAAGTTTGGAAGCTAAGTAAGGGATGA

mRNA sequence

ATGGTCATCCAAGAAAATCCTTTATTTGACTATTCTACTTCATCTTCTGAGCAAGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGAGAGGAAGCTTAATCCAATTTGGTACCTTCGATCCTATTATCGTTTGGTCTCAACCAGAGGCCCCAGGAAATGACTTCCCAGAAAGGACTCTCTACGATGAGGATCTTCAAGAAAACATTAGGCAAATTGAAGACGTAGATGGAGGCTGGACACTCGTAACCCGACGGAAGAACCAAAAGCAAAATTGGGTTCAGAAGAAATCTCGCTTGTTTCAAGAACACAAAAGAAAAAGCAAGTCTCGAAGGAAAAATGGGAAGAAGTATATGAGAAGGCTCAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAGTAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAATCAATCAAATTGTTACATGTCATGTCGTTAATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAAGCTGGAAGACTTGTCGTCCTTCAATATAGATGATTTACTATTAAGTATGGCTTCTGAAGAAAAAGAAAATGTGCATTCAACTCCTACCACACGGCTATCAGCTTTCCAAAGGTTGAGTGTAGCCACAAAAAGAAGTAAAGAACGGTCCCCTATATCAGTTTCTAACATAACAGAAACTCCAATCAAGACAAAGGGTGATGAGAAAATTCGTAGCGTTGTCCCCTCACGAATGAAGAGAAAATTGCTTGTTTCTGTAAATACAGAGGGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTCGAGTGTGTCATTCAAGGCTTCATTTGTCTCAAAGTACAAGTTCAAGCTTTGCTCGTTTCAAATTGCAGTTCGAGTTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTCGCTCGTTTCAATTCAAGTTCGAGGCTTCGCTCGTTTCAAGTTCAAGTTCGAGCATTCCTCACTACAAGTTCTTCAAGTTCCAGGTCCATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATAACTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGCTCGTTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGTTTCGATCGTTTCAAGTTCAAGTTCGAGCATTCCTCACTGCAAATACTTCAAGTTCCAAGTCAATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATAACTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGCTCATTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTCGCTTGGTTTCAGTTTGAAGTTTGGAAGCTAAGTAAGGGATGA

Coding sequence (CDS)

ATGGTCATCCAAGAAAATCCTTTATTTGACTATTCTACTTCATCTTCTGAGCAAGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGAGAGGAAGCTTAATCCAATTTGGTACCTTCGATCCTATTATCGTTTGGTCTCAACCAGAGGCCCCAGGAAATGACTTCCCAGAAAGGACTCTCTACGATGAGGATCTTCAAGAAAACATTAGGCAAATTGAAGACGTAGATGGAGGCTGGACACTCGTAACCCGACGGAAGAACCAAAAGCAAAATTGGGTTCAGAAGAAATCTCGCTTGTTTCAAGAACACAAAAGAAAAAGCAAGTCTCGAAGGAAAAATGGGAAGAAGTATATGAGAAGGCTCAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAGTAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAATCAATCAAATTGTTACATGTCATGTCGTTAATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAAGCTGGAAGACTTGTCGTCCTTCAATATAGATGATTTACTATTAAGTATGGCTTCTGAAGAAAAAGAAAATGTGCATTCAACTCCTACCACACGGCTATCAGCTTTCCAAAGGTTGAGTGTAGCCACAAAAAGAAGTAAAGAACGGTCCCCTATATCAGTTTCTAACATAACAGAAACTCCAATCAAGACAAAGGGTGATGAGAAAATTCGTAGCGTTGTCCCCTCACGAATGAAGAGAAAATTGCTTGTTTCTGTAAATACAGAGGGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTCGAGTGTGTCATTCAAGGCTTCATTTGTCTCAAAGTACAAGTTCAAGCTTTGCTCGTTTCAAATTGCAGTTCGAGTTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTCGCTCGTTTCAATTCAAGTTCGAGGCTTCGCTCGTTTCAAGTTCAAGTTCGAGCATTCCTCACTACAAGTTCTTCAAGTTCCAGGTCCATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATAACTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGCTCGTTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGTTTCGATCGTTTCAAGTTCAAGTTCGAGCATTCCTCACTGCAAATACTTCAAGTTCCAAGTCAATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATAACTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGCTCATTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTCGCTTGGTTTCAGTTTGAAGTTTGGAAGCTAAGTAAGGGATGA

Protein sequence

MVIQENPLFDYSTSSSEQAKETSDPDVMSVMMADIGTGEERMAELERKVNMLMKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENVHSTPTTRLSAFQRLSVATKRSKERSPISVSNITETPIKTKGDEKIRSVVPSRMKRKLLVSVNTEGLASNSFISKDDRASCCSSVSFKASFVSKYKFKLCSFQIAVRVFLTSSTLSSSSGASLVSIQVRGFARFKFKFEHSSLQVLQVPGPSLLISSSSSSFHNFKYFKFKFEASLVSSSSSGFPHFKYSKFKFGGFDRFKFKFEHSSLQILQVPSQSLLISSSSSSFHNFKYFKFKFEASLISSSSSGFPHFKYSKFKFGGFAWFQFEVWKLSKG

Homology

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BLAST of Spg014584 vs. NCBI nr
Match: KAA0043275.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK29339.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 7.8e-27
Identity = 77/178 (43.26%), Postives = 115/178 (64.61%), Query Frame = 0


Query: 53  MKARGSLIQFGTFDPIIVWSQPEA-PGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRR 112
           + A GSLIQFG+ +P++++  PEA   NDF      +E+     +QI+D D GWTLVTRR
Sbjct: 128 LPAIGSLIQFGSLEPVVIYFSPEALQNNDFQTICSKEEE-----KQIDDADEGWTLVTRR 187

Query: 113 KNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEFFP 172
           K +KQN+ QK+SR ++E++R  KS+R+  +K +R+L PI+EE+EE  +   P+TLK+FF 
Sbjct: 188 KKRKQNFSQKESRSYREYRRTGKSQRRKARKNLRKLLPIIEESEELPRSRQPITLKDFFS 247

Query: 173 RTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV 230
             F     +IV CH +  T+DD   S + E   K EDL S  I+D LL+++ E K+ +
Sbjct: 248 ENFSM---EIVPCHTIGTTDDDTFPSNSIEVTPKPEDLLSLGIND-LLTLSQEAKDTI 296

[Close]

BLAST of Spg014584 vs. NCBI nr
Match: TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 3.1e-23
Identity = 69/177 (38.98%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 53  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRK 112
           + A GSLIQFG+ +P++++S PE    D        +  +E  +Q+++V+ GWTLVTRRK
Sbjct: 506 LSAIGSLIQFGSLEPVVIYSSPE----DLQNNDFRADGPKEEEKQVDNVEEGWTLVTRRK 565

Query: 113 NQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEFFPR 172
            +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+EE+E   +P  P+ LK+FFP+
Sbjct: 566 KRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFPK 625

Query: 173 TFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV 230
            F     +IV+CH  + TE+D   S   E   K EDL    I+D LL+++ E K+ +
Sbjct: 626 NFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLPLGIND-LLTLSREVKDTI 674

[Close]

BLAST of Spg014584 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 3.1e-23
Identity = 69/177 (38.98%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 53  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRK 112
           + A GSLIQFG+ +P++++S PE    D        +  +E  +Q+++V+ GWTLVTRRK
Sbjct: 528 LSAIGSLIQFGSLEPVVIYSSPE----DLQNNDFRADGPKEEEKQVDNVEEGWTLVTRRK 587

Query: 113 NQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEFFPR 172
            +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+EE+E   +P  P+ LK+FFP+
Sbjct: 588 KRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFPK 647

Query: 173 TFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV 230
            F     +IV+CH  + TE+D   S   E   K EDL    I+D LL+++ E K+ +
Sbjct: 648 NFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLPLGIND-LLTLSREVKDTI 696

[Close]

BLAST of Spg014584 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-05
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1   MVIQENPLFDYSTSSSEQA-KETSDPDVMSVMMADIGTGEERMAELERKVNMLMKA 56
           +VI+ENP  D   S SE++ +E   P++MSVM+ D+ T E+RMAELE+KVNMLMKA
Sbjct: 54  IVIKENPAMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKA 109

HSP 2 Score: 120.9 bits (302), Expect = 3.1e-23
Identity = 69/177 (38.98%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 53  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRK 112
           + A GSLIQFG+ +P++++S PE    D        +  +E  +Q+++V+ GWTLVTRRK
Sbjct: 458 LSAIGSLIQFGSLEPVVIYSSPE----DLQNNDFRADGPKEEEKQVDNVEEGWTLVTRRK 517

Query: 113 NQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEFFPR 172
            +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+EE+E   +P  P+ LK+FFP+
Sbjct: 518 KRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFPK 577

Query: 173 TFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV 230
            F     +IV+CH  + TE+D   S   E   K EDL    I+D LL+++ E K+ +
Sbjct: 578 NFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLPLGIND-LLTLSREVKDTI 626

[Close]

BLAST of Spg014584 vs. NCBI nr
Match: KAA0046553.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-22
Identity = 68/180 (37.78%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 50  NMLMKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVT 109
           N  + A GSLIQFG+ +P++++S PE    D        + L+E  +Q+++V+ GWTLVT
Sbjct: 223 NSRLSAIGSLIQFGSLEPVVIYSSPE----DLQNNDFRADGLKEEEKQVDNVEEGWTLVT 282

Query: 110 RRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEF 169
           RRK  KQ++ QK+S  ++ +  K KS+R+N +K +R+  PI+E++E   +P  P+ LK+F
Sbjct: 283 RRKKHKQSFSQKESGSYRTYMSKGKSQRRNTRKNLRKFLPIIEKSEGLSRPRRPIILKDF 342

Query: 170 FPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV 229
           FP+ F     +IV+CH  + TE+D       +   + EDL S  I+D LL+++ E K+ +
Sbjct: 343 FPKNFPM---EIVSCHTTSTTEEDAFPLNAMKETPRPEDLLSLGIND-LLTLSREVKDTI 394

[Close]

BLAST of Spg014584 vs. ExPASy TrEMBL
Match: A0A5A7TPD2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00470 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.8e-27
Identity = 77/178 (43.26%), Postives = 115/178 (64.61%), Query Frame = 0


Query: 53  MKARGSLIQFGTFDPIIVWSQPEA-PGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRR 112
           + A GSLIQFG+ +P++++  PEA   NDF      +E+     +QI+D D GWTLVTRR
Sbjct: 128 LPAIGSLIQFGSLEPVVIYFSPEALQNNDFQTICSKEEE-----KQIDDADEGWTLVTRR 187

Query: 113 KNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEFFP 172
           K +KQN+ QK+SR ++E++R  KS+R+  +K +R+L PI+EE+EE  +   P+TLK+FF 
Sbjct: 188 KKRKQNFSQKESRSYREYRRTGKSQRRKARKNLRKLLPIIEESEELPRSRQPITLKDFFS 247

Query: 173 RTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV 230
             F     +IV CH +  T+DD   S + E   K EDL S  I+D LL+++ E K+ +
Sbjct: 248 ENFSM---EIVPCHTIGTTDDDTFPSNSIEVTPKPEDLLSLGIND-LLTLSQEAKDTI 296

[Close]

BLAST of Spg014584 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-23
Identity = 69/177 (38.98%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 53  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRK 112
           + A GSLIQFG+ +P++++S PE    D        +  +E  +Q+++V+ GWTLVTRRK
Sbjct: 528 LSAIGSLIQFGSLEPVVIYSSPE----DLQNNDFRADGPKEEEKQVDNVEEGWTLVTRRK 587

Query: 113 NQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEFFPR 172
            +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+EE+E   +P  P+ LK+FFP+
Sbjct: 588 KRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFPK 647

Query: 173 TFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV 230
            F     +IV+CH  + TE+D   S   E   K EDL    I+D LL+++ E K+ +
Sbjct: 648 NFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLPLGIND-LLTLSREVKDTI 696

[Close]

BLAST of Spg014584 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.2e-06
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1   MVIQENPLFDYSTSSSEQA-KETSDPDVMSVMMADIGTGEERMAELERKVNMLMKA 56
           +VI+ENP  D   S SE++ +E   P++MSVM+ D+ T E+RMAELE+KVNMLMKA
Sbjct: 54  IVIKENPAMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKA 109

HSP 2 Score: 120.9 bits (302), Expect = 1.5e-23
Identity = 69/177 (38.98%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 53  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRK 112
           + A GSLIQFG+ +P++++S PE    D        +  +E  +Q+++V+ GWTLVTRRK
Sbjct: 506 LSAIGSLIQFGSLEPVVIYSSPE----DLQNNDFRADGPKEEEKQVDNVEEGWTLVTRRK 565

Query: 113 NQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEFFPR 172
            +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+EE+E   +P  P+ LK+FFP+
Sbjct: 566 KRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFPK 625

Query: 173 TFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV 230
            F     +IV+CH  + TE+D   S   E   K EDL    I+D LL+++ E K+ +
Sbjct: 626 NFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLPLGIND-LLTLSREVKDTI 674

[Close]

BLAST of Spg014584 vs. ExPASy TrEMBL
Match: A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-23
Identity = 69/177 (38.98%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 53  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRK 112
           + A GSLIQFG+ +P++++S PE    D        +  +E  +Q+++V+ GWTLVTRRK
Sbjct: 458 LSAIGSLIQFGSLEPVVIYSSPE----DLQNNDFRADGPKEEEKQVDNVEEGWTLVTRRK 517

Query: 113 NQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEFFPR 172
            +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+EE+E   +P  P+ LK+FFP+
Sbjct: 518 KRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFPK 577

Query: 173 TFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV 230
            F     +IV+CH  + TE+D   S   E   K EDL    I+D LL+++ E K+ +
Sbjct: 578 NFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLPLGIND-LLTLSREVKDTI 626

[Close]

BLAST of Spg014584 vs. ExPASy TrEMBL
Match: A0A5D3DZE5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00190 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.7e-23
Identity = 68/180 (37.78%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 50  NMLMKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVT 109
           N  + A GSLIQFG+ +P++++S PE    D        + L+E  +Q+++V+ GWTLVT
Sbjct: 223 NSRLSAIGSLIQFGSLEPVVIYSSPE----DLQNNDFRADGLKEEEKQVDNVEEGWTLVT 282

Query: 110 RRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEF 169
           RRK  KQ++ QK+S  ++ +  K KS+R+N +K +R+  PI+E++E   +P  P+ LK+F
Sbjct: 283 RRKKHKQSFSQKESGSYRTYMSKGKSQRRNTRKNLRKFLPIIEKSEGLSRPRRPIILKDF 342

Query: 170 FPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV 229
           FP+ F     +IV+CH  + TE+D       +   + EDL S  I+D LL+++ E K+ +
Sbjct: 343 FPKNFPM---EIVSCHTTSTTEEDAFPLNAMKETPRPEDLLSLGIND-LLTLSREVKDTI 394

The following BLAST results are available for this feature:

BLAST of Spg014584 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043275.1	7.8e-27	43.26	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK29339.1 ty3-gyp...	[more]
TYJ98225.1	3.1e-23	38.98	uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]	[more]
KAA0047477.1	3.1e-23	38.98	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0047477.1	1.7e-05	57.14	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0046553.1	1.2e-22	37.78	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg014584 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg014584 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TPD2	3.8e-27	43.26	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TZU9	1.5e-23	38.98	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7TZU9	8.2e-06	57.14	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5D3D1E5	1.5e-23	38.98	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402...	[more]
A0A5D3DZE5	5.7e-23	37.78	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Spg014584 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg014584.1	Spg014584.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process