Spg013986 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg013986
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontransducin family protein / WD-40 repeat family protein
Locationscaffold3: 35267267 .. 35270845 (-)
RNA-Seq ExpressionSpg013986
SyntenySpg013986
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAAGAGGAGAACTATTGTTGCCAAGAGTAGAACTTTGGTTGCCATCGTGGTTGTTGAGGAAGTAGTGAAAGGTTGTGGATGGAAAAGGAGAAGAAGAAGAAAATATAGGGTGAAACAAAAGGGAGCAGAAGCACGATTGAATGCCCTGTATTATGAAATTGAAGTAGACTTGTATTTATAGGGTTTGAGAGAAAGTCTAAAATGAGAGTGATTAAGTGAGCAAAGGAAAATGAAAGAGAGTTTAAGAATTAAGGGAAACTTGAGCTAAAACCAATCCAAACCCAAAATAGTTTATTCTAGTGTTTTGATTCTCAATTTCCTATTTTTGCTAACTCCAAGTTACAGCTACGAAAGGATTAACCTCCTAATGGCAAGCTCTAATGTGCAAGGGATCCTTCTTAATTGTCTGTATTTTTTAAGAAAATATCACATTAAAGAGATTACCCAAGTTTGGGGTAAGAGCAATCCTCAAGTAAAAATAAACCCCAAATCGAGTAAGAGGAACTCCAAAAGTCACTCTCTTGTTTAAAAACAGTGGCAAGAAATCTGGCAGGATCGTATTCTCATTAATTAGCTTTTTGCAACAACACAAGGTTGTTGCTTGCTTGCTTAACTCAAATGTCTTCTTACTGAAACAAGTTATTAAAATGTTAACAAACATAACAATGCTTCTACTTTTGCATTTGATAGCTTATCATTTTTTGTTTTGCTTTTGAAATATCATGCATTTGATAATAAGAAAGAATATGAATTATTTTTTGAAACTTGGAGGCATCCTTTACATATACAAATACATATACGTGTATATATTTTTAATTTCAGTGACATTTGCTTAATATGTACATTTAACCACTGTTTCAAATTGTTGCTCAGTATTTGATGTTGACATTAGAGATGGTGAGCCTATTCGCAAATTGCCTTACAATTTATCAGGTAAGTTTTTAGTTTTATTGTTCTTCTTTACTGCCTTTTCCATTTACTAGAGCAGATAAATTTTTCGTGACAAGCATACTACAGTCGTCCTAGATGACTCTTGAGTTTTTATTCCTTTACTGGAAGCCTTCTCTGATCTATTTTTATTTTTTTTATCATAATTGTTTTCTGCTATAGATTTCTAGAATAAGATTTGTGTGGGGAAATATCATTCAGTCAATAAGGAAAGTGAAGTCTGGTGATAAAGGTCTTGGATGCATTCTTGGTCACACAATGGCCTTTGGTAAAACTTTTCAGGTATTTGGTTCATCGTTCACTAATGTGTTTTTGTAACTGTTTGGGTTTCCTGCTGTATCATGTCTTCAATTTTACTTGGCCAAGTTTCTTTCTCGGTTTCCTCTTTGTAAATTTCAAAGTTCATTGAAAAGTTTTATTTATTTATTTATTTATTTTTGGATAGGATCTATTTCTTGTTTATAAATAGAAACCCGTCTTTATTTTTAAATTTTTACACACATCTTAGAAAGAACAGCTCCTCTGTTAACTAGATAACAAGAATTTCCTACATTTTTTTACCGGTACTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCTTTCTCTTTTCTTTCTGTTAAGTTATGTCATTCAAAAACTTAGTGGGGACATTAGAGAAGTATTGTTAGTCATATTCATCATCAAATACAACAGGTATGCTTGCGTTATACGGTTAAGAAATACTGTGAAATCTTGAGATTTTCATATAATGGTAGAAATGAAGTCATGATATACTGCTTTTACACATTTCCCTCCGTTAGAGTAATTAATAGTTAGGACTTAAAAAAAATCGATAACTCAAATCCTGCATCAAACAATTTTATAGTGTGAACATCTTATTAGATTGCGTAATCTTTCAAATTACAGGATTTATCGTGGATGGGCTCTTTTGATGACCAAGTTAAAAAAATGTCCTTCATTAACACAATTATCATTGGTGGTTTTTTATCCATTAATTATTTTGTTTCTTTTACCAAAATACCCTTATATGTAATATGAATACAAGCAAATTTAGTTTAATATTATATTTTATTATTCGAGGTATAAATGTTTTTCAAATGAGGAAAATTGATAGCATTTTTATTTTGATTTTTCATAAAATTATATCCCAGAACCGAAGCTTACTAATACTTGATTTTATTCTCCTTAATTTCGTACAAATTTTCATTTTTATTTTCATTTATCATTAAATAAGTTTAGTCTATCAATATATAGTTCATGAACTTTAAAAAAAGTGTCTCTTAGGTCTTTGAATTTTCGATTTTGTGTCTCATAGTTTTTCGAAGTTTTAATTTTCTATCCAACAATAGATTTTTGAAGTTTCAATTTTGTATCCAACATGTCCCTTACATATTTGAAATTTTAAAAATTAAATGTTATATTGGACATAATTTTTAATTTTGTATCTAATAGGTTCTATTAGGCATTTTTAAAAACTAAGTTGTCCATTAATTACAAAACTAAAAGTTTAAAATACTACAAAATTCAATTTTATATCTAATAAAACAGTTTTTTTTTCTTTGTTTGATTAGTTCAACAATCGAGAGTATGAGGGATTGAGTTATCAATCGTTAGGATGATAATTGGATTCTTTTATCCAATGAACTAAGTTTAAATTTTTTTAGATTTTTTTGAATATATCAAACCTTTTAGATTCAAAATTGAATGTTGTTATATATTAGGTATTTTTCAATGACGTATTACACAAAATTAAAAAGATAAACTAACGTATAAAAGTGGCTATAGAGGAGAAACTTTCTCTTCCCATTTTGCCCATTCTTTTTTATATATTTATTTTATTTACAATTATTATGAATTATGAATTCCTTATTTATTATTGTTCAATTTCATAGCAAGAATGTAGATGCAACGTGAATGAAGGAAACACTTCAACTTCCCTAGGACTCTTTATTACCAAATTAATTAAAACTAAGGTTACATAGAGTAACAGAAATAGAGAAAAAAAATGATAGGAAAAAGTAAAAACAAGAGAGAATGAAATAAATGCTCAAAAATTCTATATTTTATTTATACCAATAATAGAGAAGTAGAAAGATAAAGAGGGAAACTTTAAAAACAAGAGAGAGAGAATGAAATAAATGCTCAAAAATTCTATATTTTATTTATACCAATAAGAGAGAAGTAGAAAGATAAAGAGGGCAACTTTCAGGACGTGTTAAAGAGAGTAACGGAAATATAGAGAAAAAATGATAGAAAAATGTTGGCAATGCATTGAATAAAATATAAATGTTGTAGAATTCCATATTTTATTTATACCAACGAGAGAGAAGTAGGAAGATAAAGAGGCCAACTTTGAGGAAAAAAAATAAAAAAGATAAAAATATGGAAAAGAGAACGTATTCAATAAATGCTTGTGGTTACAAATTTAAGTGTATTTGTTTTCTTCAATAACCCCTTTATATATATTCCATCTTGTGTTGATTTTCTTCATAGCAATATTCTTTTTTGAATTCTTAATGGTTGATGACTATAGGAGTAGAGGAGGTGGCGACAACAATGATGGTGAGGAGTAGCAGTAGCAATGAAAGTGGTGACATCCAAGGAGATCTTAGTGAAACACGTTGGTAG

mRNA sequence

ATGGTTAAGAGGAGAACTATTGTTGCCAAGAGTAGAACTTTGGTTGCCATCGTGGTTGTTGAGGAAGTAGTGAAAGTATTTGATGTTGACATTAGAGATGGTGAGCCTATTCGCAAATTGCCTTACAATTTATCAGGAGTAGAGGAGGTGGCGACAACAATGATGGTGAGGAGTAGCAGTAGCAATGAAAGTGGTGACATCCAAGGAGATCTTAGTGAAACACGTTGGTAG

Coding sequence (CDS)

ATGGTTAAGAGGAGAACTATTGTTGCCAAGAGTAGAACTTTGGTTGCCATCGTGGTTGTTGAGGAAGTAGTGAAAGTATTTGATGTTGACATTAGAGATGGTGAGCCTATTCGCAAATTGCCTTACAATTTATCAGGAGTAGAGGAGGTGGCGACAACAATGATGGTGAGGAGTAGCAGTAGCAATGAAAGTGGTGACATCCAAGGAGATCTTAGTGAAACACGTTGGTAG

Protein sequence

MVKRRTIVAKSRTLVAIVVVEEVVKVFDVDIRDGEPIRKLPYNLSGVEEVATTMMVRSSSSNESGDIQGDLSETRW
Homology
[Close]
BLAST of Spg013986 vs. TAIR 10
Match: AT3G18860.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 40.0 bits (92), Expect = 9.7e-04
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 0 

Query: 26  VFDVDIRDGEPIRKLPYNLS 46
           VFDVDI DGEPIRKLPYN S
Sbjct: 396 VFDVDIGDGEPIRKLPYNRS 415

[Close]
BLAST of Spg013986 vs. TAIR 10
Match: AT3G18860.2 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 40.0 bits (92), Expect = 9.7e-04
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 0 

Query: 26  VFDVDIRDGEPIRKLPYNLS 46
           VFDVDI DGEPIRKLPYN S
Sbjct: 396 VFDVDIGDGEPIRKLPYNRS 415

The following BLAST results are available for this feature:
BLAST of Spg013986 vs.
Match NameE-valueIdentityDescription
BLAST of Spg013986 vs.
Match NameE-valueIdentityDescription
BLAST of Spg013986 vs.
Match NameE-valueIdentityDescription
BLAST of Spg013986 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G18860.19.7e-0490.00transducin family protein / WD-40 repeat family protein [more]
AT3G18860.29.7e-0490.00transducin family protein / WD-40 repeat family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg013986.1Spg013986.1mRNA