Spg013926 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013926
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein OSB2, chloroplastic-like
Location	scaffold3: 42635114 .. 42636775 (+)
RNA-Seq Expression	Spg013926
Synteny	Spg013926

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTATGGATATAACTATCCAGATCAATATCTTGCTGGGATTTCCATTTGCCTATTCCAATATCCAGTCGGCCTTTTCAGGGTAAATTTAACATTCTGGGATGAATTGGCACATATTGCTTTTCAACACGTCCAGAAAGGCAACCAGATATATGTATCTGGCCGGCTGGTAGCAGATTTAGTTGAAGCTGATGATGGGAAACAGCAAACATACTATAAGGTTTTGTTGCCCTTGTTCACATTGTTCCATGGTTTTCTGCTCCTTTCCCGATGTAGACACTAATGTTCTCTATCTTTTGCAGGTAGTAGTTCAGCAACTGAATTTTATAGAAAGAAGCAACTCGACAGCACCCAATTATGACCAGGACTCTAGTTCTGTAGTGGCAGGTCTGGGATATTTTTGAATTTAAGACTATAGGTATGACACTGGATTTTGCTTCAGAATCTTGATATTTGGTGTGCTATCATATTCTTCGCAGGGAGAAAGCTCAGCAATGGTGCCGTTGATAATATGGGGTCAACACAAGAATTATGGCAAGCATTCTTTGCTAATCCCGTGGACTGGTGGGACAATAGGAAGAACAAGGTACTTGATTTATTCTCTTGCAAGATTCAAATATCTTGTTTTTGGATTCAATTGTTCTTAATATGGACCATCTTGTATTTGCTTGTGCTAGTATGCTTTACTTATATTATATTTTGCCAAGATGCATGAAAAAACCTTAGGAACTTACAACAAACTGCATGATATAATAACATACATTTTATGTATGTTATTACTTCTATTGCAGAGAGCAGACCTCTTGAATGGTTGCATTTTCTTATAAGAAACAGTTTCATAGATGGTATGTAATTATGAAAAAGGGAAAGTGGGAAGAGTCAAGTCTCGAGCCAACTGAGACTAAAAAAAATCTCTTCCAATTAGCTAAAAGAATATCTAAACTTTAATTGTTGAAAGAAGTATAAAAGCTAAACCGAGTAAGAGCAACACAGGAAAGTCATCAACAGACTTTATTTTAGTTATCGTGTCCAAATATTATTATTGATTGTACATATGAAATGGTGGGCCTCAATGATTAGAAAAAAGGATTAATAGCCTCATTTTGCTGGCCATTTTAGACATTCCAAAAGGTTACCTTTTGTAAGTATTTGTAGGTTTCTTTCACTATATGATTCACATGATTCCTTGATGAGAGATGATATTCTCACCTTAATGTTAATACATTGGTCTATTGATATTCTACTTGCAGAAGAACCCTAAATATCCAGATTTTAAGCACAAGGACACTGGGGAAGCCTTGTGGGTTGAGGGCAGGTACAATCCACCTTGGGTGAAGTCCCAGCTGGCAATATTGGATATGAGAATGGGTTCTCTTGATGAGCAGGAAGCCAAAATGGCCAACTTTGTAACTAATTTTGATTTCCCATCTTATTAGCCCCTGGCTGTGGATTCCTTTACATTGTTTTCAACAGGGTAATCATCAAATGTATTTGGAAAGATTCTTTTGTGGTGCCTGGTTTGTAAAGTTTGTAAATTAATGTGCTGTATATCAGATTGTTACTTGTTAGTAATTCAAATTTGTCTTCAGGCCCCTAGATTGATACCGTTTAAAGAATGGAAAAAAGAAAAAAAGGAGAGAAAAAGAAAAGAAAATTGGAA

mRNA sequence

ATGGAGTATGGATATAACTATCCAGATCAATATCTTGCTGGGATTTCCATTTGCCTATTCCAATATCCAGTCGGCCTTTTCAGGGTAAATTTAACATTCTGGGATGAATTGGCACATATTGCTTTTCAACACGTCCAGAAAGGCAACCAGATATATGTATCTGGCCGGCTGGTAGCAGATTTAGTTGAAGCTGATGATGGGAAACAGCAAACATACTATAAGGTAGTAGTTCAGCAACTGAATTTTATAGAAAGAAGCAACTCGACAGCACCCAATTATGACCAGGACTCTAGTTCTGTAGTGGCAGGGAGAAAGCTCAGCAATGGTGCCGTTGATAATATGGGGTCAACACAAGAATTATGGCAAGCATTCTTTGCTAATCCCGTGGACTGGTGGGACAATAGGAAGAACAAGAAGAACCCTAAATATCCAGATTTTAAGCACAAGGACACTGGGGAAGCCTTGTGGGTTGAGGGCAGGTACAATCCACCTTGGGTGAAGTCCCAGCTGGCAATATTGGATATGAGAATGGGTTCTCTTGATGAGCAGGAAGCCAAAATGGCCAACTTTGTAACTAATTTTGATTTCCCATCTTATTAG

Coding sequence (CDS)

ATGGAGTATGGATATAACTATCCAGATCAATATCTTGCTGGGATTTCCATTTGCCTATTCCAATATCCAGTCGGCCTTTTCAGGGTAAATTTAACATTCTGGGATGAATTGGCACATATTGCTTTTCAACACGTCCAGAAAGGCAACCAGATATATGTATCTGGCCGGCTGGTAGCAGATTTAGTTGAAGCTGATGATGGGAAACAGCAAACATACTATAAGGTAGTAGTTCAGCAACTGAATTTTATAGAAAGAAGCAACTCGACAGCACCCAATTATGACCAGGACTCTAGTTCTGTAGTGGCAGGGAGAAAGCTCAGCAATGGTGCCGTTGATAATATGGGGTCAACACAAGAATTATGGCAAGCATTCTTTGCTAATCCCGTGGACTGGTGGGACAATAGGAAGAACAAGAAGAACCCTAAATATCCAGATTTTAAGCACAAGGACACTGGGGAAGCCTTGTGGGTTGAGGGCAGGTACAATCCACCTTGGGTGAAGTCCCAGCTGGCAATATTGGATATGAGAATGGGTTCTCTTGATGAGCAGGAAGCCAAAATGGCCAACTTTGTAACTAATTTTGATTTCCCATCTTATTAG

Protein sequence

MEYGYNYPDQYLAGISICLFQYPVGLFRVNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNSTAPNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAKMANFVTNFDFPSY

Homology

[Close]

BLAST of Spg013926 vs. NCBI nr
Match: XP_022155802.1 (protein OSB2, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 342.8 bits (878), Expect = 2.0e-90
Identity = 160/171 (93.57%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 29  VNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 88
           +NLTFWDELAHIAFQHVQKGNQI+VSGRLVADLVEADDGKQQTYYKVVVQQLNFIERS S
Sbjct: 119 INLTFWDELAHIAFQHVQKGNQIHVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSIS 178

Query: 89  TAPNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 148
           TAP++DQDS+S+VAGRKL NGA DNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH
Sbjct: 179 TAPHHDQDSNSIVAGRKLGNGAADNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 238

Query: 149 KDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAKMANFVTNFDFPSY 200
           KDTGEALWVEGRYNPPWVKSQLA+LDMRMGSLDEQEAKMANFVTN DFPSY
Sbjct: 239 KDTGEALWVEGRYNPPWVKSQLAVLDMRMGSLDEQEAKMANFVTNLDFPSY 289

[Close]

BLAST of Spg013926 vs. NCBI nr
Match: XP_031744970.1 (protein OSB1, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 341.3 bits (874), Expect = 5.7e-90
Identity = 159/174 (91.38%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 26  LFRVNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIER 85
           L+R+ LTFWDELAHIA QHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIER
Sbjct: 5   LYRIGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIER 64

Query: 86  SNSTAPNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPD 145
           SNSTAP+YDQDS+S++AGRK  +GAVDN GSTQELWQAFFANPVDWWDNRKNKKNPKYPD
Sbjct: 65  SNSTAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKNPKYPD 124

Query: 146 FKHKDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAKMANFVTNFDFPSY 200
           FKHKDTGEALWVEGRYNPPWVKSQLA+LDMRMGSLD+QEAKMANFVT+FDFPSY
Sbjct: 125 FKHKDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKMANFVTSFDFPSY 178

[Close]

BLAST of Spg013926 vs. NCBI nr
Match: XP_038896738.1 (protein OSB2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 339.3 bits (869), Expect = 2.2e-89
Identity = 156/171 (91.23%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 29  VNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 88
           +NLTFWDELAH+A QH+QKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS
Sbjct: 123 INLTFWDELAHVASQHIQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 182

Query: 89  TAPNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 148
           T P+YDQDS+SV+AG+KL +GAVDN+GSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH
Sbjct: 183 TGPHYDQDSNSVMAGKKLGSGAVDNVGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 242

Query: 149 KDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAKMANFVTNFDFPSY 200
           KDTGEALWVEGRYNPPWVKSQLA+LDMRM SLD+QEAKMANFVTNFDFPSY
Sbjct: 243 KDTGEALWVEGRYNPPWVKSQLALLDMRMSSLDDQEAKMANFVTNFDFPSY 293

[Close]

BLAST of Spg013926 vs. NCBI nr
Match: XP_004146958.1 (protein OSB2, chloroplastic isoform X1 [Cucumis sativus] >KGN44765.1 hypothetical protein Csa_016591 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 1.1e-88
Identity = 157/171 (91.81%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 29  VNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 88
           + LTFWDELAHIA QHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS
Sbjct: 124 IGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 183

Query: 89  TAPNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 148
           TAP+YDQDS+S++AGRK  +GAVDN GSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH
Sbjct: 184 TAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 243

Query: 149 KDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAKMANFVTNFDFPSY 200
           KDTGEALWVEGRYNPPWVKSQLA+LDMRMGSLD+QEAKMANFVT+FDFPSY
Sbjct: 244 KDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKMANFVTSFDFPSY 294

[Close]

BLAST of Spg013926 vs. NCBI nr
Match: XP_022155803.1 (protein OSB2, chloroplastic-like isoform X2 [Momordica charantia])

HSP 1 Score: 336.3 bits (861), Expect = 1.8e-88
Identity = 159/171 (92.98%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 29  VNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 88
           +NLTFWDELAHIAFQHVQKGNQI+VSGRLVADLVEADDGKQQTYYKVVVQQLNFIERS S
Sbjct: 119 INLTFWDELAHIAFQHVQKGNQIHVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSIS 178

Query: 89  TAPNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 148
           TAP++DQDS+S+VAGRKL NGA DNMGSTQELWQAFFANPVDWWDNRKN KNPKYPDFKH
Sbjct: 179 TAPHHDQDSNSIVAGRKLGNGAADNMGSTQELWQAFFANPVDWWDNRKN-KNPKYPDFKH 238

Query: 149 KDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAKMANFVTNFDFPSY 200
           KDTGEALWVEGRYNPPWVKSQLA+LDMRMGSLDEQEAKMANFVTN DFPSY
Sbjct: 239 KDTGEALWVEGRYNPPWVKSQLAVLDMRMGSLDEQEAKMANFVTNLDFPSY 288

[Close]

BLAST of Spg013926 vs. ExPASy Swiss-Prot
Match: Q9SX99 (Protein OSB1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OSB1 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-24
Identity = 61/163 (37.42%), Postives = 90/163 (55.21%), Query Frame = 0


Query: 27  FRVNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADD--GKQQTYYKVVVQQLNFIE 86
           FR++L  WD +A     H++  + I VSGRL +    + D        Y+V V ++N++ 
Sbjct: 96  FRISLRMWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYV- 155

Query: 87  RSNSTAPNYDQDSS-SVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKY 146
              +  P++  DS  S     K  +   ++      LWQ FF+NP DWWDNR+NKKNPK 
Sbjct: 156 ---AAPPSHVLDSQISKNPKTKTEDDIEESKKDEIYLWQVFFSNPYDWWDNRRNKKNPKQ 215

Query: 147 PDFKHKDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAK 187
           PDFKHKDTGEALW+     P W+  +L + D +    DE++ +
Sbjct: 216 PDFKHKDTGEALWLCSDL-PDWITRRLELFDQKNRFYDEEKTR 253

[Close]

BLAST of Spg013926 vs. ExPASy Swiss-Prot
Match: Q8GXH3 (Protein OSB2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OSB2 PE=1 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-13
Identity = 53/157 (33.76%), Postives = 79/157 (50.32%), Query Frame = 0


Query: 27  FRVNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIE-R 86
           F + + F  +LA  A ++V K +QI+VSG+L  D    +    Q   +V+VQ LNFI+  
Sbjct: 138 FWIPIIFEGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPM 197

Query: 87  SNSTAPNYDQDSS-SVVAGRKLSNGAVDN---MGSTQELWQAFFANPVDWWDNRKNKKN- 146
           S S +P     SS    +G K           +    + W     NP +WWD+R+NK N 
Sbjct: 198 SPSPSPFMVMSSSEKEESGIKKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNG 257

Query: 147 ---PKYPDFKHKDTGEALWVEGRYNPPWVKSQLAILD 175
              P++PDFK KD+  +LW+     P WV  +L  L+
Sbjct: 258 LVKPRHPDFKSKDSSFSLWLNKA--PNWVLPKLEGLE 292

[Close]

BLAST of Spg013926 vs. ExPASy Swiss-Prot
Match: Q8GWJ4 (Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OSB3 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-13
Identity = 51/153 (33.33%), Postives = 75/153 (49.02%), Query Frame = 0


Query: 27  FRVNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERS 86
           F + + F  +LA IA QHV+K ++I+VSG+L  D    +    Q+  +V+VQ LNF++ +
Sbjct: 121 FWIPIIFEGDLAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAA 180

Query: 87  NSTA-----PNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKN- 146
            ST      P  +  S      R      +D    T   W+    NP +W D+R NK N 
Sbjct: 181 TSTTKTISPPEKEVTSIKKKPARSKKVKVIDE--ETSNSWKHLIENPKEWLDHRGNKANG 240

Query: 147 ---PKYPDFKHKDTGEALWVEGRYNPPWVKSQL 171
              P +PDFK K  G +LW+     P W   +L
Sbjct: 241 LVKPGHPDFKMKVGGLSLWLSTA--PDWALLKL 269

[Close]

BLAST of Spg013926 vs. ExPASy Swiss-Prot
Match: Q9FYJ2 (Protein OSB4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OSB4 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-08
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 118 QELWQAFFANPVDWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQL 171
           +E W+    N   WWDNR +K+ PK PDFKHK+TG  LW+    +P WV  +L
Sbjct: 293 EESWKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLSD--SPSWVLEKL 343

[Close]

BLAST of Spg013926 vs. ExPASy TrEMBL
Match: A0A6J1DQC6 (protein OSB2, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022838 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 9.5e-91
Identity = 160/171 (93.57%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 29  VNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 88
           +NLTFWDELAHIAFQHVQKGNQI+VSGRLVADLVEADDGKQQTYYKVVVQQLNFIERS S
Sbjct: 119 INLTFWDELAHIAFQHVQKGNQIHVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSIS 178

Query: 89  TAPNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 148
           TAP++DQDS+S+VAGRKL NGA DNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH
Sbjct: 179 TAPHHDQDSNSIVAGRKLGNGAADNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 238

Query: 149 KDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAKMANFVTNFDFPSY 200
           KDTGEALWVEGRYNPPWVKSQLA+LDMRMGSLDEQEAKMANFVTN DFPSY
Sbjct: 239 KDTGEALWVEGRYNPPWVKSQLAVLDMRMGSLDEQEAKMANFVTNLDFPSY 289

[Close]

BLAST of Spg013926 vs. ExPASy TrEMBL
Match: A0A0A0K4W2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G378540 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 5.2e-89
Identity = 157/171 (91.81%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 29  VNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 88
           + LTFWDELAHIA QHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS
Sbjct: 124 IGLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 183

Query: 89  TAPNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 148
           TAP+YDQDS+S++AGRK  +GAVDN GSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH
Sbjct: 184 TAPHYDQDSNSIMAGRKPGSGAVDNTGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 243

Query: 149 KDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAKMANFVTNFDFPSY 200
           KDTGEALWVEGRYNPPWVKSQLA+LDMRMGSLD+QEAKMANFVT+FDFPSY
Sbjct: 244 KDTGEALWVEGRYNPPWVKSQLALLDMRMGSLDDQEAKMANFVTSFDFPSY 294

[Close]

BLAST of Spg013926 vs. ExPASy TrEMBL
Match: A0A6J1DNW7 (protein OSB2, chloroplastic-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022838 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.9e-89
Identity = 159/171 (92.98%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 29  VNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 88
           +NLTFWDELAHIAFQHVQKGNQI+VSGRLVADLVEADDGKQQTYYKVVVQQLNFIERS S
Sbjct: 119 INLTFWDELAHIAFQHVQKGNQIHVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSIS 178

Query: 89  TAPNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 148
           TAP++DQDS+S+VAGRKL NGA DNMGSTQELWQAFFANPVDWWDNRKN KNPKYPDFKH
Sbjct: 179 TAPHHDQDSNSIVAGRKLGNGAADNMGSTQELWQAFFANPVDWWDNRKN-KNPKYPDFKH 238

Query: 149 KDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAKMANFVTNFDFPSY 200
           KDTGEALWVEGRYNPPWVKSQLA+LDMRMGSLDEQEAKMANFVTN DFPSY
Sbjct: 239 KDTGEALWVEGRYNPPWVKSQLAVLDMRMGSLDEQEAKMANFVTNLDFPSY 288

[Close]

BLAST of Spg013926 vs. ExPASy TrEMBL
Match: A0A1S3BRV3 (protein OSB2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492617 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.2e-87
Identity = 154/171 (90.06%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 29  VNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 88
           ++LTFWDELAHIA QHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS
Sbjct: 126 ISLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 185

Query: 89  TAPNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 148
           TAP+YDQDS+S++AGRK S+GAVDN  STQELWQAFFANPVDWWDNRKNKKNPKYPDFKH
Sbjct: 186 TAPHYDQDSNSIMAGRKPSSGAVDNTASTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 245

Query: 149 KDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAKMANFVTNFDFPSY 200
           KDTGEALWVEGRYNPPWVKSQLA+LDMRM SLD+QE KM NFV+NFDFPSY
Sbjct: 246 KDTGEALWVEGRYNPPWVKSQLALLDMRMSSLDDQEVKMTNFVSNFDFPSY 296

[Close]

BLAST of Spg013926 vs. ExPASy TrEMBL
Match: A0A5D3DR47 (Protein OSB2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00530 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.3e-87
Identity = 153/171 (89.47%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 29  VNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 88
           ++LTFWDELAHIA QHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS
Sbjct: 126 ISLTFWDELAHIASQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERSNS 185

Query: 89  TAPNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKYPDFKH 148
           TAP+YDQDS+S++AGRK S+GAVDN  STQELWQAFFANPVDWWDNRKNKK+PKYPDFKH
Sbjct: 186 TAPHYDQDSNSIMAGRKPSSGAVDNTASTQELWQAFFANPVDWWDNRKNKKSPKYPDFKH 245

Query: 149 KDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAKMANFVTNFDFPSY 200
           KDTGEALWVEGRYNPPWVKSQLA+LDMRM SLD+QE KM NFV+NFDFPSY
Sbjct: 246 KDTGEALWVEGRYNPPWVKSQLALLDMRMSSLDDQEVKMTNFVSNFDFPSY 296

[Close]

BLAST of Spg013926 vs. TAIR 10
Match: AT1G47720.1 (Primosome PriB/single-strand DNA-binding )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 61/163 (37.42%), Postives = 90/163 (55.21%), Query Frame = 0


Query: 27  FRVNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADD--GKQQTYYKVVVQQLNFIE 86
           FR++L  WD +A     H++  + I VSGRL +    + D        Y+V V ++N++ 
Sbjct: 96  FRISLRMWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYV- 155

Query: 87  RSNSTAPNYDQDSS-SVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKNPKY 146
              +  P++  DS  S     K  +   ++      LWQ FF+NP DWWDNR+NKKNPK 
Sbjct: 156 ---AAPPSHVLDSQISKNPKTKTEDDIEESKKDEIYLWQVFFSNPYDWWDNRRNKKNPKQ 215

Query: 147 PDFKHKDTGEALWVEGRYNPPWVKSQLAILDMRMGSLDEQEAK 187
           PDFKHKDTGEALW+     P W+  +L + D +    DE++ +
Sbjct: 216 PDFKHKDTGEALWLCSDL-PDWITRRLELFDQKNRFYDEEKTR 253

[Close]

BLAST of Spg013926 vs. TAIR 10
Match: AT4G20010.2 (plastid transcriptionally active 9 )

HSP 1 Score: 79.0 bits (193), Expect = 4.9e-15
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = 0


Query: 27  FRVNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIE-R 86
           F + + F  +LA  A ++V K +QI+VSG+L  D    +    Q   +V+VQ LNFI+  
Sbjct: 138 FWIPIIFEGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPM 197

Query: 87  SNSTAPNYDQDSS-SVVAGRKLSNGAVDN---MGSTQELWQAFFANPVDWWDNRKNKKN- 146
           S S +P     SS    +G K   G       +    + W     NP +WWD+R+NK N 
Sbjct: 198 SPSPSPFMVMSSSEKEESGIKKQPGIAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNG 257

Query: 147 ---PKYPDFKHKDTGEALWVEGRYNPPWVKSQLAILD 175
              P++PDFK KD+  +LW+     P WV  +L  L+
Sbjct: 258 LVKPRHPDFKSKDSSFSLWLNKA--PNWVLPKLEGLE 292

[Close]

BLAST of Spg013926 vs. TAIR 10
Match: AT4G20010.1 (plastid transcriptionally active 9 )

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-14
Identity = 53/157 (33.76%), Postives = 79/157 (50.32%), Query Frame = 0


Query: 27  FRVNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIE-R 86
           F + + F  +LA  A ++V K +QI+VSG+L  D    +    Q   +V+VQ LNFI+  
Sbjct: 138 FWIPIIFEGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPM 197

Query: 87  SNSTAPNYDQDSS-SVVAGRKLSNGAVDN---MGSTQELWQAFFANPVDWWDNRKNKKN- 146
           S S +P     SS    +G K           +    + W     NP +WWD+R+NK N 
Sbjct: 198 SPSPSPFMVMSSSEKEESGIKKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNG 257

Query: 147 ---PKYPDFKHKDTGEALWVEGRYNPPWVKSQLAILD 175
              P++PDFK KD+  +LW+     P WV  +L  L+
Sbjct: 258 LVKPRHPDFKSKDSSFSLWLNKA--PNWVLPKLEGLE 292

[Close]

BLAST of Spg013926 vs. TAIR 10
Match: AT5G44785.2 (organellar single-stranded DNA binding protein 3 )

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-14
Identity = 51/153 (33.33%), Postives = 75/153 (49.02%), Query Frame = 0


Query: 27  FRVNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERS 86
           F + + F  +LA IA QHV+K ++I+VSG+L  D    +    Q+  +V+VQ LNF++ +
Sbjct: 121 FWIPIIFEGDLAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAA 180

Query: 87  NSTA-----PNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKN- 146
            ST      P  +  S      R      +D    T   W+    NP +W D+R NK N 
Sbjct: 181 TSTTKTISPPEKEVTSIKKKPARSKKVKVIDE--ETSNSWKHLIENPKEWLDHRGNKANG 240

Query: 147 ---PKYPDFKHKDTGEALWVEGRYNPPWVKSQL 171
              P +PDFK K  G +LW+     P W   +L
Sbjct: 241 LVKPGHPDFKMKVGGLSLWLSTA--PDWALLKL 269

[Close]

BLAST of Spg013926 vs. TAIR 10
Match: AT5G44785.1 (organellar single-stranded DNA binding protein 3 )

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-14
Identity = 51/153 (33.33%), Postives = 75/153 (49.02%), Query Frame = 0


Query: 27  FRVNLTFWDELAHIAFQHVQKGNQIYVSGRLVADLVEADDGKQQTYYKVVVQQLNFIERS 86
           F + + F  +LA IA QHV+K ++I+VSG+L  D    +    Q+  +V+VQ LNF++ +
Sbjct: 121 FWIPIIFEGDLAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAA 180

Query: 87  NSTA-----PNYDQDSSSVVAGRKLSNGAVDNMGSTQELWQAFFANPVDWWDNRKNKKN- 146
            ST      P  +  S      R      +D    T   W+    NP +W D+R NK N 
Sbjct: 181 TSTTKTISPPEKEVTSIKKKPARSKKVKVIDE--ETSNSWKHLIENPKEWLDHRGNKANG 240

Query: 147 ---PKYPDFKHKDTGEALWVEGRYNPPWVKSQL 171
              P +PDFK K  G +LW+     P W   +L
Sbjct: 241 LVKPGHPDFKMKVGGLSLWLSTA--PDWALLKL 269

The following BLAST results are available for this feature:

BLAST of Spg013926 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155802.1	2.0e-90	93.57	protein OSB2, chloroplastic-like isoform X1 [Momordica charantia]	[more]
XP_031744970.1	5.7e-90	91.38	protein OSB1, mitochondrial isoform X2 [Cucumis sativus]	[more]
XP_038896738.1	2.2e-89	91.23	protein OSB2, chloroplastic-like [Benincasa hispida]	[more]
XP_004146958.1	1.1e-88	91.81	protein OSB2, chloroplastic isoform X1 [Cucumis sativus] >KGN44765.1 hypothetica...	[more]
XP_022155803.1	1.8e-88	92.98	protein OSB2, chloroplastic-like isoform X2 [Momordica charantia]	[more]

BLAST of Spg013926 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX99	1.5e-24	37.42	Protein OSB1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OSB1 PE=1 SV=1	[more]
Q8GXH3	3.4e-13	33.76	Protein OSB2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OSB2 PE=1 SV=2	[more]
Q8GWJ4	3.4e-13	33.33	Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OSB...	[more]
Q9FYJ2	5.7e-08	47.17	Protein OSB4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OSB4 PE=2 SV=1	[more]

BLAST of Spg013926 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQC6	9.5e-91	93.57	protein OSB2, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A0A0K4W2	5.2e-89	91.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G378540 PE=4 SV=1	[more]
A0A6J1DNW7	8.9e-89	92.98	protein OSB2, chloroplastic-like isoform X2 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3BRV3	2.2e-87	90.06	protein OSB2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492617 PE=4 SV...	[more]
A0A5D3DR47	8.3e-87	89.47	Protein OSB2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00530 P...	[more]

BLAST of Spg013926 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47720.1	1.1e-25	37.42	Primosome PriB/single-strand DNA-binding	[more]
AT4G20010.2	4.9e-15	34.39	plastid transcriptionally active 9	[more]
AT4G20010.1	2.4e-14	33.76	plastid transcriptionally active 9	[more]
AT5G44785.2	2.4e-14	33.33	organellar single-stranded DNA binding protein 3	[more]
AT5G44785.1	2.4e-14	33.33	organellar single-stranded DNA binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 27..100 e-value: 4.5E-11 score: 44.8
None	No IPR available	PANTHER	PTHR10302:SF15	OS03G0633900 PROTEIN	coord: 28..191
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 30..82 e-value: 2.6E-8 score: 33.8
IPR000424	Primosome PriB/single-strand DNA-binding	PROSITE	PS50935	SSB	coord: 1..84 score: 11.071334
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 28..191
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 28..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013926.1	Spg013926.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006264	mitochondrial DNA replication
biological_process	GO:0051096	positive regulation of helicase activity
biological_process	GO:0006260	DNA replication
cellular_component	GO:0042645	mitochondrial nucleoid
molecular_function	GO:0003697	single-stranded DNA binding