Spg013621 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013621
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S27
Location	scaffold3: 41436800 .. 41438301 (-)
RNA-Seq Expression	Spg013621
Synteny	Spg013621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCCTTTATATTCCTCTTTGACGGCGCTTTTCTTTTCTTCCGTAACATACATCGCACCGCCCTGTTTCTCTCGCGAACTCTCGTTGGGATTTAGGGTTCGCGATCCAGACAATTGCTTTCTGATCAACATGGTAAACTCTAATTTCTTCCTGCTGCATTCGCTTATGCCTCTTCATCTCTCCTGAATTCGGATCCAACAATTTTCACTTTCTTTCACGCTATTGGCAGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCCGAACTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTATGTCGTTTCGTGTAAATTCTTTTGCCTTTATTTGATCTAATCTTTTCTTCGATAATGGTGATTGAGCTGTTCTGTGAATTTTGCGTGCAGGACGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTCTTCATCTTTGTTCATTTATTGTAGTTACTTGACCTATTTATTTTCTGAAAGGTGTAGATATTTGGTAATTGAATGATTGATGACACGAAACTCTTTGAATGAAAAACAGAACCACTGTATTCAGTCATTCACAAACAGTTGTAGTGTGTGGGAATTGCCAGGCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTTACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAAATTCTTGGCCTAGAATTTGCTTGTAGTAGGATCAGGATGGGTGGGTTTGATTTTTGATATTGCAATTGAGCACATTTTGTCTTTGTCTCGGGTTTTCTACGTTTTGGTGGTTGATTATTCAATTTTGCTTGAGAAGAAGAGCATTTTGGCACCGCTGTTGCAGTTAATTTGATGTTGTCAATGAAACTAAGTTTTGTTTGAAGTAATTCACACCAAGTGTTTTGCGTGTTCCCCAATACTTGTTTAATTGATCGAACTGTTTTGATTTGCTTGCCATTATTCCCTGAGCTATAAATTTAGATCCTATTTTCTTCTGCTTTTAATCTTTGAAATGTTGAAGTGCTCTTTGTTGAATAGTTTGTCATTTGTAAGCAATTAGAATTTCTTGTTTTATTGTCTCGATCTGGGAGTGTACTGGTTGTCTATTTGCTCCTCATGATCCTTTTTCGAGTGTACTACTTATCGTTTTTGTACTGTTAACTGTTAAGTGACATCCACCGAACGAGTTTTGCAGACCATGCTGTTTGATATTGCATTCTGACCATACAAATTTTGGCTGTGGTGGTCTCTTATATTGGCTACTGGTTTGTAGAAAAAATTGGTCCATTTGTTTTCTTTAACTTTTCTGTAGTTGGCTTGAGCGGGATTTGTTATCTGGGGTAAATAGATTTGTAGCAATATGATTAGAGCAGGATTTAAAAGCAGGATTTCAGCTATGCAAATTGTTTCGGCCTGAAGTTATCTGGTATGTTTCAGATACATGGCTCAAAAGAAAACTTTAGCTCGGAGGAAGATGATCTTGAGTA

mRNA sequence

GCTCCTTTATATTCCTCTTTGACGGCGCTTTTCTTTTCTTCCGTAACATACATCGCACCGCCCTGTTTCTCTCGCGAACTCTCGTTGGGATTTAGGGTTCGCGATCCAGACAATTGCTTTCTGATCAACATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCCGAACTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTAGTGTGTGGGAATTGCCAGGCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTTACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA

Coding sequence (CDS)

GCTCCTTTATATTCCTCTTTGACGGCGCTTTTCTTTTCTTCCGTAACATACATCGCACCGCCCTGTTTCTCTCGCGAACTCTCGTTGGGATTTAGGGTTCGCGATCCAGACAATTGCTTTCTGATCAACATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCCGAACTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTAGTGTGTGGGAATTGCCAGGCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTTACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA

Protein sequence

APLYSSLTALFFSSVTYIAPPCFSRELSLGFRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

Homology

[Close]

BLAST of Spg013621 vs. NCBI nr
Match: XP_022991567.1 (40S ribosomal protein S27-2-like [Cucurbita maxima])

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-48
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 31  FRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITT 90
           FRVRDPD CFLI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITT
Sbjct: 51  FRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITT 110

Query: 91  VFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD 130
           VFSHSQTVVVCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 111 VFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 149

[Close]

BLAST of Spg013621 vs. NCBI nr
Match: XP_022953224.1 (uncharacterized protein LOC111455834 [Cucurbita moschata])

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-48
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 31  FRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITT 90
           FRVRDPD CFLI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITT
Sbjct: 111 FRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITT 170

Query: 91  VFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD 130
           VFSHSQTVVVCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 171 VFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 209

[Close]

BLAST of Spg013621 vs. NCBI nr
Match: KAG6592828.1 (40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187.6 bits (475), Expect = 6.8e-44
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 37  DNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ 96
           D+  LINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ
Sbjct: 287 DSSLLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ 346

Query: 97  TVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD 130
           TVVVCGNCQ+VLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 347 TVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 379

[Close]

BLAST of Spg013621 vs. NCBI nr
Match: KAF5449188.1 (hypothetical protein F2P56_029664, partial [Juglans regia])

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-42
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 40  FLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV 99
           FL  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV
Sbjct: 25  FLFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV 84

Query: 100 VCGNCQAVLCQPTGGRAKLTEGCSFRRKGD 130
           VCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 85  VCGNCQTVLCQPTGGRARLTEGCSFRRKGD 114

[Close]

BLAST of Spg013621 vs. NCBI nr
Match: EYU46714.1 (hypothetical protein MIMGU_mgv1a016569mg [Erythranthe guttata])

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 90/116 (77.59%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 14  SVTYIAPPCFSRELSLGFRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSP 73
           ++  +A   F  ELSL F  + P++     MVL ND DLLNPPAELEKRKHKLKRLVQSP
Sbjct: 5   AIRLLAQNFFPVELSLRFTDQHPES----TMVLSNDYDLLNPPAELEKRKHKLKRLVQSP 64

Query: 74  NSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD 130
           NSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 65  NSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 116

[Close]

BLAST of Spg013621 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 3.2e-44
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 44  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 103
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 104 CQAVLCQPTGGRAKLTEGCSFRRKGD 130
           CQ +LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Spg013621 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.3e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 44  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 103
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 104 CQAVLCQPTGGRAKLTEGCSFRRK 128
           CQ +LC PTGG+AKLTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Spg013621 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 167.9 bits (424), Expect = 7.4e-41
Identity = 79/86 (91.86%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 44  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 103
           MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1   MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 104 CQAVLCQPTGGRAKLTEGCSFRRKGD 130
           CQ VLCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of Spg013621 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 2.1e-40
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 44  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 103
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 104 CQAVLCQPTGGRAKLTEGCSFRRK 128
           CQ VLCQPTGG+A+L EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Spg013621 vs. ExPASy Swiss-Prot
Match: P47903 (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-36
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 44  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 103
           MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1   MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 104 CQAVLCQPTGGRAKLTEGCSFRRKGD 130
           C +VLC PTG   +LTEGCSFRRK D
Sbjct: 61  CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of Spg013621 vs. ExPASy TrEMBL
Match: A0A6J1JM72 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111488139 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.0e-48
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 31  FRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITT 90
           FRVRDPD CFLI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITT
Sbjct: 51  FRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITT 110

Query: 91  VFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD 130
           VFSHSQTVVVCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 111 VFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 149

[Close]

BLAST of Spg013621 vs. ExPASy TrEMBL
Match: A0A6J1GP15 (40S ribosomal protein S27 OS=Cucurbita moschata OX=3662 GN=LOC111455834 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.0e-48
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 31  FRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITT 90
           FRVRDPD CFLI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITT
Sbjct: 111 FRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITT 170

Query: 91  VFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD 130
           VFSHSQTVVVCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 171 VFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 209

[Close]

BLAST of Spg013621 vs. ExPASy TrEMBL
Match: A0A0A0K9G0 (40S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 41  LINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVV 100
           LI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVV
Sbjct: 57  LIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVV 116

Query: 101 CGNCQAVLCQPTGGRAKLTEGCSFRRKGD 130
           CGNCQ VLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 117 CGNCQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of Spg013621 vs. ExPASy TrEMBL
Match: A0A022S2Y8 (40S ribosomal protein S27 OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016569mg PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 90/116 (77.59%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 14  SVTYIAPPCFSRELSLGFRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSP 73
           ++  +A   F  ELSL F  + P++     MVL ND DLLNPPAELEKRKHKLKRLVQSP
Sbjct: 5   AIRLLAQNFFPVELSLRFTDQHPES----TMVLSNDYDLLNPPAELEKRKHKLKRLVQSP 64

Query: 74  NSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD 130
           NSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 65  NSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 116

[Close]

BLAST of Spg013621 vs. ExPASy TrEMBL
Match: A0A6J1D6X7 (40S ribosomal protein S27 OS=Momordica charantia OX=3673 GN=LOC111017497 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.4e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 44  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 103
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 104 CQAVLCQPTGGRAKLTEGCSFRRKGD 130
           CQAVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61  CQAVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of Spg013621 vs. TAIR 10
Match: AT3G61110.1 (ribosomal protein S27 )

HSP 1 Score: 179.1 bits (453), Expect = 2.3e-45
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 44  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 103
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 104 CQAVLCQPTGGRAKLTEGCSFRRKGD 130
           CQ +LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Spg013621 vs. TAIR 10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-42
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 44  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 103
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 104 CQAVLCQPTGGRAKLTEGCSFRRK 128
           CQ +LC PTGG+AKLTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Spg013621 vs. TAIR 10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-41
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 44  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 103
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 104 CQAVLCQPTGGRAKLTEGCSFRRK 128
           CQ VLCQPTGG+A+L EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Spg013621 vs. TAIR 10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 151.0 bits (380), Expect = 6.6e-37
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 44  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 103
           MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 104 CQAVLCQPTGGRAKLTEGCSFRRKGD 130
           CQ VLCQPTGG+AKLT GCSFR+  D
Sbjct: 61  CQNVLCQPTGGKAKLTVGCSFRKLTD 86

The following BLAST results are available for this feature:

BLAST of Spg013621 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991567.1	2.1e-48	95.96	40S ribosomal protein S27-2-like [Cucurbita maxima]	[more]
XP_022953224.1	2.1e-48	95.96	uncharacterized protein LOC111455834 [Cucurbita moschata]	[more]
KAG6592828.1	6.8e-44	94.62	40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF5449188.1	1.3e-42	95.56	hypothetical protein F2P56_029664, partial [Juglans regia]	[more]
EYU46714.1	2.2e-42	77.59	hypothetical protein MIMGU_mgv1a016569mg [Erythranthe guttata]	[more]

BLAST of Spg013621 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2F1	3.2e-44	96.51	40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2	[more]
O64650	3.3e-41	92.86	40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1	[more]
Q96564	7.4e-41	91.86	40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2	[more]
Q8L953	2.1e-40	91.67	40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2	[more]
P47903	1.1e-36	83.72	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=...	[more]

BLAST of Spg013621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JM72	1.0e-48	95.96	40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111488139 PE=3 SV=1	[more]
A0A6J1GP15	1.0e-48	95.96	40S ribosomal protein S27 OS=Cucurbita moschata OX=3662 GN=LOC111455834 PE=3 SV=...	[more]
A0A0A0K9G0	1.1e-42	97.75	40S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1	[more]
A0A022S2Y8	1.1e-42	77.59	40S ribosomal protein S27 OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016569mg ...	[more]
A0A6J1D6X7	1.4e-42	100.00	40S ribosomal protein S27 OS=Momordica charantia OX=3673 GN=LOC111017497 PE=3 SV...	[more]

BLAST of Spg013621 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61110.1	2.3e-45	96.51	ribosomal protein S27	[more]
AT2G45710.1	2.3e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	1.5e-41	91.67	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	6.6e-37	82.56	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023407	Ribosomal protein S27, zinc-binding domain superfamily	GENE3D	2.20.25.100		coord: 48..128 e-value: 3.9E-48 score: 163.3
IPR000592	Ribosomal protein S27	PFAM	PF01667	Ribosomal_S27e	coord: 73..127 e-value: 9.4E-27 score: 92.5
IPR000592	Ribosomal protein S27	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 43..128
IPR000592	Ribosomal protein S27	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 81..113
IPR000592	Ribosomal protein S27	HAMAP	MF_00371	Ribosomal_S27e	coord: 67..127 score: 16.658947
None	No IPR available	PANTHER	PTHR11594:SF7	40S RIBOSOMAL PROTEIN S27-RELATED	coord: 43..128
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 73..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013621.1	Spg013621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome