Spg013420 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg013420
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Locationscaffold1: 21749742 .. 21760052 (+)
RNA-Seq ExpressionSpg013420
SyntenySpg013420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCGCCCACAGTCCCTCATCTCCAACGTTCTCCGGTGAGCACGGGACCCATGACGGCGACGATATAGAAGCAATTTCGAGGCGGCTTTTCGGCGGTTTTTGCGGTGTTTCGCGGTGGGTTTTCTTTCTTCTCGAGCTACCCCCCCGCACCGATCTCTCTCCCTATCTCTCTGTTTTCCCTTTCTTCTCCGGTGACAGCTGTCCTTTGATGCGTTTTTCGGTGACCGACGAAGCGGACAGTTCGATTTTGGGTCCTTTTTAGGCGTTTCCAGCGAGCTTCACAGTGGGTTTTCATCTCTCTCCCTAGTGGGTTTTCTTTCTCCTTCGAGCTACCCTCCCTCGCACCGACCTCTCTCCTTATCTCTCTATTTTCCCTTTCTTCTCCGGCGATAACAGTCCTTAGAGGCATTTTCCGGCGTGCGATGGCGCGAACAACTCGATTTTGGGTCGTTTTTAAGCGTTTCCAGCGAGGTTCATCTGTGGGTTTTCATCTCTCTCCCTATTGGGTTTTCAGCGAGGTTCATCTATCGCCGGAGAACGCCTGGAGACGACGTCGGAGATGAGGGACTGTGGGCGGCAACTTGAATCAAACAAAAAAAAATGAAGAAGAATGTTAAATAACTCTTTAGTTTTATTTTCAGTTTTTATTCTCTGCCTTTTTGTTGCTTTATTTGTTTTTTCTTATGTTGCCTTTGGTCCAATCTTTCTTTGACATGTGTAGGGTTTTTCTCTTGGTTACCACTATTTATTAGCACCTTTCTTTCCCTCTGTTGTAATTTTTTATATCAAACATTTTGGCTGCCGCCACAAAGCATTTTTCTTTAGCCTTTTCACATTTTCATGATAAAGAAGGCTTACGTTTTTTTTTAAAAAAAGAAAAGTTAGAGAGGGAGAGGAGGAAGAAAAACAAAAAAGATGTCGGCGGCGGCCATGTGGTGATGAAGAAGAACAGTAGTCGGCCATGGTTGAAGAAGGAGATGGAATAAGAAGAGACAAGAGACAAGAGACAAGAGAGAAGAAATAAAAAAGTTATAAGAAAATAATATTTTTATTATTTTTAATATATTTTTATTTTGAAAAATTAAAAAATATTTAAAAAAAAAATAATAGCGCCACGTCAGCAAGCCGGAGGGACTAAAATGAAACGAAATCCAAACCTCAGGGACTAAATTGTCGAATTTGAAAACTCAGGGACCAAAATGAAACCTAATCCAAACCTCAGGGACTAAAAGTGTATTTTTCCCTTTATACTAAATATTCTCTAATTTATATTACTATATAAAGAGGTCATGCTTCAGACGCATCCGTGATCTCTCTGAACAGTGGTGATGCCAATATGGAGCAGCTCCATTATATGTACAACATACCTATTGCACCTCCTCTTGGACCTAGGCGTAGAGGAGGTGCTCGTGTCCAAGAAGAGGATATTCCAGTACAGCCTTATATTCAGGTACATGAGGATGTTCTAGTACAACCTCATATTACGGTACAAGAGCGTATTCCAGTCCAGGAGCATTTCCCACCAATTGTACCAGAAGAATTTCACCACAATGTTGACGACACGCCTCCTTTTACTCAGATGCAAGATGGTGTTGGTCTGTCCACTCCAGCGATGACGATACCGACCCCTAGTACTCTATACCTTCACACTCCAATTCCACCATCATGGCATGATTATGAGGTTGGTCCTTCATCGTCATCTGCTCACGGACGTGGACGTGGACGTGGAGAGCATGCACAATATGTATACCCTACAGAGCTTGTAGAGGAACCCAGGGAACAAGAGGATCCAGATGATCAGGTACCGAGGGGTCGTCGTCAGCAATCAGCTCGTAATCGACGACGTCTGCCTTGTGGCACACATTAGTCATATTAGCTTCGTGTATTGACTTTTATTGAACTTATATTTGTACTGAATTTTAATTAATGAATCATCATTTAGAAATGTATGTTTGAAAAAAAAATGATAATGATGAATTATTTATCCATTAAAAATATTTCTTCATGCTAAGAAATTTAAGAACAAGAATTAATTGAAATAACAAATTAAATTGAAATGAACAAACAATAACGAAATTGAAATATCTAAAGAAAAAAACATAAAATCACAAAATATAAATAAACTACAAGTACCCACAAATTGAAAAAAAAAAAAAAGAAAAATCAATATCCAAGGAATTGTTGTAAAGAAAATATTCCTTGAAAGTTTCTTTAAATAGCAATATAATATCCAATGATTTTTTTAAAAAAAAAATGGGATAACAGCAAGAATGGCCAAATTTAAATGTGCGTTTTGAAAAATAGTATAACAAACTATGATATCCATATTTAAATATAAAATTTAAAATGATTTAACAAAATCTGTGATTTGGTCTGAATTTAATATATCAAAAATCTAGATACACTTGGAGCGTGTTTTGCACATTGACTGGAGGGGCAAGGTCGGTATTTAGTAAAATGTTGTGGTATGCACATCTCACGTGCGATCATTTTTTAGTGATTTTATAATTTTGGACATATTTCAAAACCGACCCTCAAAATTTGCCATCCATACAAATTTCTCAAAAAAATTGATAATATCCAAGGAATTGGGACATTTTTTATTAATTTTATTTTAATTTATCCATAATGTGTTTAAATAATTAGTACTTAGTTAAATTTTAATTGAATTAGAGAAAAAGAAATAAATTGTAATATAAAAATTCAATTTGTTTAAAACATTTAAAAGAATGCAATTATCTATTTCATTTTTTAAAAAAAAATATTAGAAGAAAAAAATAGGAAGGAAAAAAAAATTAAAATAAAGGAAACCTGCGTTCAATTTTATTTGAACCTGAGATCTCTATCTCTAACTATAAAAACGAACTAGTTGCCAATATGGCAATAATACATTATATTACAAATTCGTCTAACAGCCATTTGTAGGTCACCAGAATTTTTTTTTAAATCGTGGCCTGACGTGCGACACGTGGATAAAATCATCATATTTTCTTAAAAACTTTTAAAATTTTCAATTTTAATAAAAAAAAGTCCTATTGCTAATGCATCAGCCACAAAATTACAATCCCTTTTGATATGAACAAAACAAACTGATTCACAAAAGGGAAGCTACTAGAGAATATCTCTCACCCAAGTGCCAATCTCATTCGGAAATTAAAGAGGACGAACCCTTCAAACGTATATTTGTGCATTGGTTATAAACTTATATTTGTACAAAGCTTTCTTTTATTGAAATTGTTGAATCTATAAAGATTTTTACATTATTTTTTTTAAAAAAAAAATTAATGAATGAATTATCGAAAATTGAACCAAGAGTAAAAATTTCAACACTTCTTTTAAGTTTGGAGTTCAATTTGATGGAATTAAGGAGTGATGGTTTAACTTTTCAACTGTTTAATTTTGAAAAACAAAATCTAGTGTTTGACAACCACTAAAAATTACTTATTAAAAAATGAGACTGAGAAGTAAATGAGAGAAACACAAGGTAAATTTTTTTAAAAAAGTTTTTAAGTATTTAATAACTTGTGTATAAAAACAATTAGAAAATGTAACCAAACATATGAGTGTTTAAATTCTAAACAATTTTTATACAAAATGTTTAAAAGAAAATGCATTTTTGAAAAACACTTAAACTAAAATGTATTTCAAACGGGCCCTAAAAGTTTAAGGTACAAATTTGGACCATTACCTAACAAGTATACATTGAAAATTGATTTTTTATTTTTCTGTTTTTCTAAATAGGAAACAACAAATTGAAAAAAGAAATTATTCACATGATGGATGAAATGATGAAAATGGTTGTGGTAATTAAGAGAGGGTTTCGTCATTCCCCAAATGTTACGGCTGGATAACATATTGTTTTTTCCAAAGCATGTTTTCAAATAAAATGTGTCACACCAACCAAGATTGGCTGCATTCTAAATGGCTTTCTGTGTGCTCCAACAGTTGCAATGTCCATCAATTCAAAAAGCCATTCCTCTTTAAAATCTTCTTTTACGTTAAATTAATGCAAATCCTAAATTCCAAATTATATTAAACTATCAATCAAAATTGCAAACATGAACATAGTTCAACTGGTATAAAATTTGTATTAATGATCAAGATGTCTATGGTTCGAATCTCTCACCTCACATATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTATCAGTGAAAACTCTGGTACATATATTATAGATTCAACTTTAATTGTACTGAAAAATCCAACTTTAATCTTTTTTGAATTAAATTAATCGTACCAGTTGTTGTCTATAAAGTATTTTTAAAAATAAATAATAAATAAAAAGGTTATAATTTTTGTCTATATGTAGATACTTAAAATCTAGGATGGTGTGTGTTGAATGAGAAATTTCGGCCAATCACAAATTGCCACATCATTAATTTGAATTAATGATAAAATAAATTTGGGACCAATTACAAATTTACATGTGTCCCTAAATTAAATTAATAGACATTAAAATTCGGCAAATCAAACAATGCCACTTGTCTATTATTGATCCATCAGATGACATAAGTCAAGTCCAATCAAATTATGCCACGTGGCAATTGGGCCCGAGACTAATGTACCCGAGGTCACTGAAGAAATTGGGTCAAATTAAAATAATCTAACCTTATTAAAAAGAGGTTGGATTAGAGCCCAAATATAGCCCAAGCCCAAATGTTAGACCCAAGTTCAAGCTCATATGAGGTCCATCAAACTCTATAAATAGAGGAGGCCACCATCCATTTTGGGCATTGAGATTCAGAGACAGAGTCAAAGAACTCAGAGTCTAGAGCATTCTGCCAGAGTCCAGAGTCGTCAGAAGCCAAAGAGTCAAGAGAATTCAGAAGGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGGTTTGAAGACTAGAAGACTCTAAGAAGAGATCAACAAGCCAACCGACTGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAATCGACCGATCAAGAGGATCAACAAGTCAGCAGGTCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACATATCATCAAGCCAACAGGCCGATCCAAAAGAACGTCAAGCCAGCAGGCCGATCATCCAAGAAGATTAACAAGTCACAACAGGCCGATCCAAAAGATCATTAAGCCAATAGGCCGATCATCCAAAAAGATCAACAAGCCAACAGGCCGATCTAAGAGATCATCAAACCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGCTAGAGGCCAAAGTTTATATATTTTTGAGAAAGAATCAGAGGATAAATATTAGAGATTGTACACTTCTACATACAAAATCAATAAAATCAAGTTCATTTCCACGATTTAAATTTCCTTGTCGAAATCTCGTGTGAACAAATTGGCACGCCCAGTGGGACAGTCTCTACCTCTCATCTCTTTTTCTCGCAAAGAAATCATGACTTCCGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGTAGTCGCTCCAAGAAAACCCAACACGAAGACAACCAAACTCTTGTCATTGCAAACAAGATGCTGAGACGCATGACAAAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGGCAAATTCATCTCTCTTTCTCAGCAACTAAATGAAACATTGAGTCTTGACGTAATGTCTGTTATGATGACTGATGCAGGAACTAGTGAAGAATGGATGGCTGAAGTTGAGAAGAAAATCAGCATGTTACTGAAAATGGTTGAAGAGAAAGACAACGAAATTGCCTCTCTCAAAAGCCAAATGGACAGTCGGGATGCTGTTGAATCAAGTCAGACCCCTGCCATCAAAGACAAGGGAAAGACCACTATACAAGATCAATCACAACACTCCGCTTCTATTGCTTCACTGTCTGTACAACAACTTCAGGATATGATCATGAATTCTATCAGAGCTCAATATAGTGGACCGACTCGGAACTCTCTCTTGTATTCCAAGCCGTATACCAAGAGAATCGACAATCTGAGAATGCCTAACGGATACCAGCCACCAAAGTATCAACAATTCGATGGGAAGGGCAATCCCAAGCAGCACGTTGCTCATTTCGTCGAGACATGTGAAAACGCTGGTACTAAAGGAGACCTACTGGTCAAGCAGTTCGTACGAACACTGAAGGGAAATGCTTTCGACTGGTATACCGACCTTGAGCCTGAGACTATTGATAATTGGGAACAACTTGAGAAGGAGTTCCTTAACCGCTTCTACAGCACAAGGCGAACCGTCAGCATGATAGAGCTCACCAATGCCAAACAACGAAAAGGTGAACCAGTTGTTGACTACATCAATCGTTGGAGAGCTCTAAGCCTAGACTGCAAGGACCGACTCACCGAAGTGTCTTCTGTTGAAATGTGCATCCAAGGCATGCATTGGGGACTTCTATATATTCTACAAGGAATAAAACCTCGTACTTTCGAAGAATTAGCAACACGCGCCCACGATATGGAGTTAAGTATTGCTAGTCGAGGAGATGAAGACCTTCTACTCGCTAATATGAAGAAAGACGAAGAGAACGTTGAAGCAACTATAGAAGAATCTATGGTTGTAAATACAACCCCTCCCGAGTTGTCTTCTAAAGAAAAACACAAGAAGATTGAAAAGCAACAAGGAAATGAAAGGTGTCGCTTGACTTTGAAGGAAAGACAGAAAAAGGTCTATCCTTTTCCTAATTCCGACGTCCCTAACATGTTAGAACAACTACTGAAAACACGGTTGATAGAACTTCCCAAGTGCAAACGACCAGAAGAGATTGAAAAGGTCGACGATCCCAACTACTGCAAGTATCATTGAGTTATCAGTCATCCGGTAGAAAAATGTTTTGTCCTGAAAGAGCTAATTCTGAGGTTAGCTAAAGAAGGAAAAATCGAGTTGGATCTTGAGGAAGTAGCTCAATCAAATCATGCTACGACAACAACAAACACTTGCAATCAAATGTGTTTTGATTCACTTCACAGTCAAGAGATGCACCTACTTCAATTTGGAACATTGGAGCCTATAGCTATTTGGTTTCACCATGAGGTATCAGGAGACAAATCTCAAGATACAGTCAATCTTGTCAGCGATGAATGTAAAGGAAGTACTGTCATGACTCGTCGGAAGAAACAAGGACAACATCTTGTTCAGAAAGGATGTTGCTCATCCAAAAGAAAGAATAGACATCGAAGACAGAAGAATTCAAAGAAACCTAAACTTGAGAAAGAAAGAAATCAAGATCCTTCTCAACATCGCCAATTGGTAACCTTTAAATAATCATCCTCGAGAAATTTTCGTCCCATCAAGAAAATGGAAGAAAATTTTGCAAGTTCATGTTATATCAATGTAGAAGAAGATGGTGCATTGAAGGAAATCAAGCAAAGGACTTCTGTCTTTAATCGCATTGAGCCTTCAACTACTAGACTTTCGGTCTTCCAAAGAATAAGTATGGCTATAGCAGGAGAAGAAGATCAAAGTTTGACGTCCGCCATCACTCGACATTCAGTTTTCCAAAGACTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTCAACAACTGTTTTTGATCGCCTCAAAGTAACAAGCGACCAACATGAAAGAAAGGTGGACAATTCAGAAGTTAAATTGTTCGATGAAATAAACGATGACAATAAGCTTCATAGTACCACGCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCTTTGAAGGTGAAACCAAATCTTATCATTTTGACAAATCCTACAAATGAAGGGTCTGATCAAGACTATGATAGAGAAAAAGAAATTTAAAATGTATTGCTCCTTATCGCATGAGCATAAACTGCATGATGCTCCTAGGTCACACGAGCTTAAAAGGTGAATGCGAAAAAAAAAGTTAAATAAAATAAACTTGAACTACGTTATGACTTGATCCCTTTCCTTCAAGGGTACGTAGGCAGCTTAAAAAAAAAACTTTAAGTTCAGTCCTTGCAAACAAAAAAAGTGTCACAAATATAGAAGCATGACAATACAAGTTAAAGATCCTTCCCCTTACTGGGGGCAACACAGTAAATTGAAGACGTACATTGCTATGAATGGAATGCTACGAATTAAATGCATAAAAGAAGGTTGCGTTCTTTCAAGTTCGACGATTCGCTCGCTCCAAGTCCGGCGTCTCGCCTAGTTCGGTGTCTCGCTCCTTCTATGTTTGCATTCCACACACTTCAAGTTCGGTGTTTCGCTCCTTCAAAGTTTGGAGTCTCACCCCCTTCAAGTTTGGCATCCTACTTCCTCTAAGTTTGCATTCTCCATGCTTCAAGTTTGGTGTTTCGCTCGCTCAAAGTTCGACGTCTCACCCTCTCCATGTTCGGCGATTGCTCCATTCAAGTTTGGCTTATCACTTGTCCCAAGTTTGATACCTTGCTTCACCTTCAAAGGGTGGCAGTTGAAGACTTCACTATCACTTCATCTTCAAAATTTGGCGATCTACATCGCTTCATTTTCAAAGGTTGACCATTGACAACTTTGCTTCATCTCCAAAAGATAGCGGTGGAAGGATTCGTTGTCGCTTCATTCTTCAAAGTTGACGGTTGACAACTTCACTTCAAAGTTGGTGGTTGGCGACTTTCACTTCACTTCAAAGTTGGCGGTTGGCGACTTTCACTTCATTTTCAAAAGTTGACGGTTGGCAGTCTCGCTTCTTCTTCAAAGTTGACGGTTGACAACTTCACTTCAAAGTTGGCGGTTGGCGACTTTCACTTCATTTTCAAAAGTTGACGATGGGCAGTCTCGCTTTTTCTTCAAAAATTTACGGCTGACAACTTCACTTCATATTCAAAAGTTGGCGATTAAAGTCTTCGCTTTAGAACATCTGCAAAGATGAACAACTTTAACGTTGACTTTATCTTGAAAGTGTCTAGACTGGAAGATGCATCTTAGCTGCAAGTTAAAAAAAAAAATGCTTAATATCAAGCAACAAAAAAAAAAAAAAAAAAAAAAAAGAGAAAGAAAGACAATAAAGGTGTTGTTAAAAAAATGGTGACCACCCCTGCAGGATACTACGGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTATAAGTGAATCTAATGATGACCGTTGTAGGCGAGTCTAGTGACCACCCCTGCAGGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAATGGATCTGATGACGACCGTTGTAGGCGAGTCTGGTGACCACCCCTGCAGGATATTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAATGAATCTGATGACGATCACTGTAGCAAGTCTGGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGAGGACTGGTCTAGCAAGAATGCATCGCTGTAGGCAAATATGGTGACTACCCCTACAGGCTACTCAGATCACCCAATAAATACAGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCAAGTCTAGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGGGGGCTGGTCTAGCAAGAGTGCATCGTTGTAGGGAAATATGGTGACTACCCCTGCAAGCTACTCAAATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTGGACGAATCTGGTGACCACCCCTGCAGGCTACTCAATCACCCAATAAAATGGGGACTAGTCTAGCAGGAGCGCATCACTGTAGGCGAATCTGGTGACTACTCCTGTAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCTAGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGACCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGACCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCAAGTCTGATGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCTGGTGA

mRNA sequence

GCCGCCCACAGTCCCTCATCTCCAACGTTCTCCGGTGAGCACGGGACCCATGACGGCGACGATATAGAAGCAATTTCGAGGCGGCTTTTCGGCGGTTTTTGCGGTGTTTCGCGAGGTCATGCTTCAGACGCATCCGTGATCTCTCTGAACAGTGGTGATGCCAATATGGAGCAGCTCCATTATATGTACAACATACCTATTGCACCTCCTCTTGGACCTAGGCGTAGAGGAGGTGCTCGTGTCCAAGAAGAGGATATTCCAGTACAGCCTTATATTCAGGTACATGAGGATGTTCTAGTACAACCTCATATTACGGTACAAGAGCGTATTCCAGTCCAGGAGCATTTCCCACCAATTGTACCAGAAGAATTTCACCACAATGTTGACGACACGCCTCCTTTTACTCAGATGCAAGATGGTGTTGGTCTGTCCACTCCAGCGATGACGATACCGACCCCTAGTACTCTATACCTTCACACTCCAATTCCACCATCATGGCATGATTATGAGGTTGGTCCTTCATCGTCATCTGCTCACGGACGTGGACGTGGACGTGGAGAGCATGCACAATATGTATACCCTACAGAGCTTGTAGAGGAACCCAGGGAACAAGAGGATCCAGATGATCAGAGACAGAGTCAAAGAACTCAGAGTCTAGAGCATTCTGCCAGAGTCCAGAGTCGTCAGAAGCCAAAGAGTCAAGAGAATTCAGAAGGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGTCGCTCCAAGAAAACCCAACACGAAGACAACCAAACTCTTGTCATTGCAAACAAGATGCTGAGACGCATGACAAAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGGCAAATTCATCTCTCTTTCTCAGCAACTAAATGAAACATTGAGTCTTGACGTAATGTCTGTTATGATGACTGATGCAGGAACTAGTGAAGAATGGATGGCTGAAGTTGAGAAGAAAATCAGCATGTTACTGAAAATGGTTGAAGAGAAAGACAACGAAATTGCCTCTCTCAAAAGCCAAATGGACAGTCGGGATGCTGTTGAATCAAAAGAAGATGGTGCATTGAAGGAAATCAAGCAAAGGACTTCTGTCTTTAATCGCATTGAGCCTTCAACTACTAGACTTTCGGTCTTCCAAAGAATAAGTATGGCTATAGCAGGAGAAGAAGATCAAAGTTTGACGTCCGCCATCACTCGACATTCAGTTTTCCAAAGACTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTCAACAACTGTTTTTGATCGCCTCAAAGTAACAAGCGACCAACATGAAAGAAAGGTGGACAATTCAGAAGTTAAATTGTTCGATGAAATAAACGATGACAATAAGCTTCATAGTACCACGCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCTTTGAAGGCGAGTCTAGTGACCACCCCTGCAGGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGACAGGTGGTGAAATCACTGCAAATGAATCTGATGACGATCACTGTAGCAAGTCTGGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGAGGACTGGTCTAGCAAGAATGCATCGCTGTAGGCAAATATGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCTGGTGA

Coding sequence (CDS)

GCCGCCCACAGTCCCTCATCTCCAACGTTCTCCGGTGAGCACGGGACCCATGACGGCGACGATATAGAAGCAATTTCGAGGCGGCTTTTCGGCGGTTTTTGCGGTGTTTCGCGAGGTCATGCTTCAGACGCATCCGTGATCTCTCTGAACAGTGGTGATGCCAATATGGAGCAGCTCCATTATATGTACAACATACCTATTGCACCTCCTCTTGGACCTAGGCGTAGAGGAGGTGCTCGTGTCCAAGAAGAGGATATTCCAGTACAGCCTTATATTCAGGTACATGAGGATGTTCTAGTACAACCTCATATTACGGTACAAGAGCGTATTCCAGTCCAGGAGCATTTCCCACCAATTGTACCAGAAGAATTTCACCACAATGTTGACGACACGCCTCCTTTTACTCAGATGCAAGATGGTGTTGGTCTGTCCACTCCAGCGATGACGATACCGACCCCTAGTACTCTATACCTTCACACTCCAATTCCACCATCATGGCATGATTATGAGGTTGGTCCTTCATCGTCATCTGCTCACGGACGTGGACGTGGACGTGGAGAGCATGCACAATATGTATACCCTACAGAGCTTGTAGAGGAACCCAGGGAACAAGAGGATCCAGATGATCAGAGACAGAGTCAAAGAACTCAGAGTCTAGAGCATTCTGCCAGAGTCCAGAGTCGTCAGAAGCCAAAGAGTCAAGAGAATTCAGAAGGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGTCGCTCCAAGAAAACCCAACACGAAGACAACCAAACTCTTGTCATTGCAAACAAGATGCTGAGACGCATGACAAAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGGCAAATTCATCTCTCTTTCTCAGCAACTAAATGAAACATTGAGTCTTGACGTAATGTCTGTTATGATGACTGATGCAGGAACTAGTGAAGAATGGATGGCTGAAGTTGAGAAGAAAATCAGCATGTTACTGAAAATGGTTGAAGAGAAAGACAACGAAATTGCCTCTCTCAAAAGCCAAATGGACAGTCGGGATGCTGTTGAATCAAAAGAAGATGGTGCATTGAAGGAAATCAAGCAAAGGACTTCTGTCTTTAATCGCATTGAGCCTTCAACTACTAGACTTTCGGTCTTCCAAAGAATAAGTATGGCTATAGCAGGAGAAGAAGATCAAAGTTTGACGTCCGCCATCACTCGACATTCAGTTTTCCAAAGACTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTCAACAACTGTTTTTGATCGCCTCAAAGTAACAAGCGACCAACATGAAAGAAAGGTGGACAATTCAGAAGTTAAATTGTTCGATGAAATAAACGATGACAATAAGCTTCATAGTACCACGCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCTTTGAAGGCGAGTCTAGTGACCACCCCTGCAGGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGACAGGTGGTGAAATCACTGCAAATGAATCTGATGACGATCACTGTAGCAAGTCTGGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGAGGACTGGTCTAGCAAGAATGCATCGCTGTAGGCAAATATGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCTGGTGA

Protein sequence

AAHSPSSPTFSGEHGTHDGDDIEAISRRLFGGFCGVSRGHASDASVISLNSGDANMEQLHYMYNIPIAPPLGPRRRGGARVQEEDIPVQPYIQVHEDVLVQPHITVQERIPVQEHFPPIVPEEFHHNVDDTPPFTQMQDGVGLSTPAMTIPTPSTLYLHTPIPPSWHDYEVGPSSSSAHGRGRGRGEHAQYVYPTELVEEPREQEDPDDQRQSQRTQSLEHSARVQSRQKPKSQENSEGFEIQNSKDSRLRSRSKKTQHEDNQTLVIANKMLRRMTKSAQLEIATAENLMLGKFISLSQQLNETLSLDVMSVMMTDAGTSEEWMAEVEKKISMLLKMVEEKDNEIASLKSQMDSRDAVESKEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLINTEGSLKASLVTTPAGYYSHQSDWSRQVTGGEITANESDDDHCSKSGDYPCRLLRSPNKMRTGLARMHRCRQIWLLRSPNKMGTGLAGVHHCESGDYPCRLLRSPNKMGTGLAGVHHCRRIW
Homology
[Close]
BLAST of Spg013420 vs. NCBI nr
Match: TYK14888.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 5.3e-30
Identity = 80/126 (63.49%), Postives = 97/126 (76.98%), Query Frame = 0 

Query: 360 SKEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSV 419
           SKE     EI QRTSVF+RI+PSTTR SVFQR+SMA   EE+Q  T   TR S F+RLS+
Sbjct: 60  SKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTRTSTFKRLSI 119

Query: 420 STSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLI 479
           STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E NDD+K+HS  PSRMKRK SV I
Sbjct: 120 STSKKDRPSTSAFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLSVDI 179

Query: 480 NTEGSL 486
           NTEGSL
Sbjct: 180 NTEGSL 185

[Close]
BLAST of Spg013420 vs. NCBI nr
Match: TYK09793.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 5.3e-30
Identity = 80/126 (63.49%), Postives = 97/126 (76.98%), Query Frame = 0 

Query: 360 SKEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSV 419
           SKE     EI QRTSVF+RI+PSTTR SVFQR+SMA   EE+Q  T   TR S F+RLS+
Sbjct: 465 SKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTRTSTFKRLSI 524

Query: 420 STSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLI 479
           STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E NDD+K+HS  PSRMKRK SV I
Sbjct: 525 STSKKDRPSTSAFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLSVDI 584

Query: 480 NTEGSL 486
           NTEGSL
Sbjct: 585 NTEGSL 590

[Close]
BLAST of Spg013420 vs. NCBI nr
Match: KAA0046209.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 2.6e-29
Identity = 79/126 (62.70%), Postives = 97/126 (76.98%), Query Frame = 0 

Query: 360 SKEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSV 419
           SKE     EI QRTSVF+RI+PSTTR SVFQR+SMA+  EE+Q  T   TR S F+RLS+
Sbjct: 60  SKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMAMKEEENQCPTFIYTRTSTFKRLSI 119

Query: 420 STSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLI 479
           STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E NDD+K+HS  PSRMKRK  V I
Sbjct: 120 STSKKDRPSTSSFDRLKMTNDQRQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFVDI 179

Query: 480 NTEGSL 486
           NTEGSL
Sbjct: 180 NTEGSL 185

[Close]
BLAST of Spg013420 vs. NCBI nr
Match: KAA0025376.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 5.8e-29
Identity = 78/126 (61.90%), Postives = 96/126 (76.19%), Query Frame = 0 

Query: 360 SKEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSV 419
           SKE     EI QRTSVF+RI+PSTTR SVFQR+SMA   EE+Q  T   TR S F+RLS+
Sbjct: 330 SKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTRTSTFKRLSI 389

Query: 420 STSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLI 479
           STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E NDD+K+HS  PSRMK+K  V I
Sbjct: 390 STSKKDRPSTSAFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKKKLFVDI 449

Query: 480 NTEGSL 486
           NTEGSL
Sbjct: 450 NTEGSL 455

[Close]
BLAST of Spg013420 vs. NCBI nr
Match: TYK27425.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-28
Identity = 78/128 (60.94%), Postives = 97/128 (75.78%), Query Frame = 0 

Query: 358 VESKEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRL 417
           V SKE     EIK+RTS+F+RI+PSTTR SVFQR+SMA   EE+Q  TS  TR S F+RL
Sbjct: 364 VSSKEVDYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRL 423

Query: 418 SVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSV 477
           S+STS+K RPST+VF+RLK+T+DQ +R+  + + K F E NDD+K+HS  PS MKR  SV
Sbjct: 424 SISTSKKDRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKRTLSV 483

Query: 478 LINTEGSL 486
            INTEGSL
Sbjct: 484 DINTEGSL 491

[Close]
BLAST of Spg013420 vs. ExPASy TrEMBL
Match: A0A5D3CUI5 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00200 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-30
Identity = 80/126 (63.49%), Postives = 97/126 (76.98%), Query Frame = 0 

Query: 360 SKEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSV 419
           SKE     EI QRTSVF+RI+PSTTR SVFQR+SMA   EE+Q  T   TR S F+RLS+
Sbjct: 60  SKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTRTSTFKRLSI 119

Query: 420 STSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLI 479
           STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E NDD+K+HS  PSRMKRK SV I
Sbjct: 120 STSKKDRPSTSAFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLSVDI 179

Query: 480 NTEGSL 486
           NTEGSL
Sbjct: 180 NTEGSL 185

[Close]
BLAST of Spg013420 vs. ExPASy TrEMBL
Match: A0A5D3CD55 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00850 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-30
Identity = 80/126 (63.49%), Postives = 97/126 (76.98%), Query Frame = 0 

Query: 360 SKEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSV 419
           SKE     EI QRTSVF+RI+PSTTR SVFQR+SMA   EE+Q  T   TR S F+RLS+
Sbjct: 465 SKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTRTSTFKRLSI 524

Query: 420 STSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLI 479
           STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E NDD+K+HS  PSRMKRK SV I
Sbjct: 525 STSKKDRPSTSAFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLSVDI 584

Query: 480 NTEGSL 486
           NTEGSL
Sbjct: 585 NTEGSL 590

[Close]
BLAST of Spg013420 vs. ExPASy TrEMBL
Match: A0A5D3CD55 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00850 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.1e-04
Identity = 50/145 (34.48%), Postives = 79/145 (54.48%), Query Frame = 0 

Query: 233 SQENSEGFEIQNSKDSRLRSRSKKTQ-HEDNQTLVIANKMLRRMTKSAQLEIATAENLML 292
           SQ N+        K     SRS++ Q  E      +A  +  +++K  +  I   EN  +
Sbjct: 3   SQGNTSKALSDIGKRPNTHSRSREIQSFEVTPPFEVAKNIWEQISKPPKGGIVIKENPAI 62

Query: 293 GKFISLSQQLNETL-SLDVMSVMMTDAGTSEEWMAEVEKKISMLLKMVEEKDNEIASLKS 352
            +  S SQ  +E +   ++MSVM+T+  TSE  M E+EKK++ML+K+VEE+D EIA LK+
Sbjct: 63  DEHYSSSQPSSEEMPHPNIMSVMVTNVDTSENRMTELEKKVNMLMKVVEERDYEIAFLKN 122

Query: 353 QMDSRDAVESKEDGALKEIKQRTSV 376
            ++S DA ES     +K   +  +V
Sbjct: 123 HIESHDAAESSHKHTVKNTDKGKAV 147


HSP 2 Score: 141.4 bits (355), Expect = 1.3e-29
Identity = 79/126 (62.70%), Postives = 97/126 (76.98%), Query Frame = 0 

Query: 360 SKEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSV 419
           SKE     EI QRTSVF+RI+PSTTR SVFQR+SMA+  EE+Q  T   TR S F+RLS+
Sbjct: 60  SKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMAMKEEENQCPTFIYTRTSTFKRLSI 119

Query: 420 STSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLI 479
           STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E NDD+K+HS  PSRMKRK  V I
Sbjct: 120 STSKKDRPSTSSFDRLKMTNDQRQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFVDI 179

Query: 480 NTEGSL 486
           NTEGSL
Sbjct: 180 NTEGSL 185

[Close]
BLAST of Spg013420 vs. ExPASy TrEMBL
Match: A0A5A7SHQ6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00030 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.8e-29
Identity = 78/126 (61.90%), Postives = 96/126 (76.19%), Query Frame = 0 

Query: 360 SKEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSV 419
           SKE     EI QRTSVF+RI+PSTTR SVFQR+SMA   EE+Q  T   TR S F+RLS+
Sbjct: 330 SKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTRTSTFKRLSI 389

Query: 420 STSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLI 479
           STS+K RPST+ FDRLK+T+DQ +R++ +S+ K F E NDD+K+HS  PSRMK+K  V I
Sbjct: 390 STSKKDRPSTSAFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKKKLFVDI 449

Query: 480 NTEGSL 486
           NTEGSL
Sbjct: 450 NTEGSL 455

[Close]
BLAST of Spg013420 vs. ExPASy TrEMBL
Match: A0A5D3DVW2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001190 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.3e-29
Identity = 78/128 (60.94%), Postives = 97/128 (75.78%), Query Frame = 0 

Query: 358 VESKEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRL 417
           V SKE     EIK+RTS+F+RI+PSTTR SVFQR+SMA   EE+Q  TS  TR S F+RL
Sbjct: 364 VSSKEVDYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRL 423

Query: 418 SVSTSRKCRPSTTVFDRLKVTSDQHERKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSV 477
           S+STS+K RPST+VF+RLK+T+DQ +R+  + + K F E NDD+K+HS  PS MKR  SV
Sbjct: 424 SISTSKKDRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKRTLSV 483

Query: 478 LINTEGSL 486
            INTEGSL
Sbjct: 484 DINTEGSL 491

The following BLAST results are available for this feature:
BLAST of Spg013420 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK14888.15.3e-3063.49gag protease polyprotein [Cucumis melo var. makuwa][more]
TYK09793.15.3e-3063.49ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0046209.12.6e-2962.70gag protease polyprotein [Cucumis melo var. makuwa][more]
KAA0025376.15.8e-2961.90retrotransposon gag protein [Cucumis melo var. makuwa][more]
TYK27425.11.3e-2860.94retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of Spg013420 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg013420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CUI52.6e-3063.49Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3CD552.6e-3063.49Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3CD553.1e-0434.48Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SHQ62.8e-2961.90Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3DVW26.3e-2960.94Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of Spg013420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 324..351
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..260
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..215
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..241

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg013420.1Spg013420.1mRNA