Spg013340 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013340
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	PI31_Prot_N domain-containing protein
Location	scaffold1: 14628511 .. 14629430 (+)
RNA-Seq Expression	Spg013340
Synteny	Spg013340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATCCATCCCTCTTCCAGAAGCCTAAAGCAAAAACACACAATAAAAATACCATTCGTGTGTGTCTGTGTGTGTGTACTGTTCGTTTCATCATTATTTCAAACCCAGAAAGGAAAAACCCCCAGCTTTCTTTCACCCGATTCCTTGGGGTTGATCGAGATGGGTTTTTGTAATTGGAAGTGTCTGTTTCTGGGTTTGCTTCTGCTCTCTGTTTCTTTCAGAAATGGAGCTGTGGAAGCTGGTAGGCCCTTTTCGATCTTCCCACTCAAGCTTCACAAAGGTAATACAATACAAGAGCAACATCAACTTTTTGGTTCTAATTTAATAACAATTCTCTTTGTGATTTACTTGTTTGATTTTATGGCAGGTTTTGAGGGATATAATTCACAGATTTTTGCTACCTTGGGAATTGAATGCAAGTGCTGTGATGGGACTGCAGGTGAATGCACTACTGTCCTCACAACTTCTTGCTCTAATCTCCATTGTTCTCCTTGGAAACAGTATTAAAACCAATCTCTTGTCAGGATTTGAATTTCTGATTTTTTGGTCGATAATATATGTCTTAACCAATTGTAATGTTAGAGAGCTTTATTCTTTCCTTTATTGCGGGAGATCAAAGTTCCATCTTAAAATAGAAGATGATAGATTGATTGATAGTAATAGTTTCTTATCTCTCAGTTTAATTAGTAGAGTAGTTTTATGGTATTTTTAATTTTGGGCTAAGCTCTTATATGCTTTTTTTTCCTAAAAAAAATAGGGGATCTTGGGGAAATAAAGATGATGTTTTTATTTATAAATTCATGATTTTTCTTTTCTATTTTTATTGAATGTCATACTTTGGACAACATTTGTATTTTGTAGCATAAATGATTAGACGTACTCTTCAAATGAAATTGGGAGTGGAATAATATAAGGTGTCG

mRNA sequence

CTTATCCATCCCTCTTCCAGAAGCCTAAAGCAAAAACACACAATAAAAATACCATTCGTGTGTGTCTGTGTGTGTGTACTGTTCGTTTCATCATTATTTCAAACCCAGAAAGGAAAAACCCCCAGCTTTCTTTCACCCGATTCCTTGGGGTTGATCGAGATGGGTTTTTGTAATTGGAAGTGTCTGTTTCTGGGTTTGCTTCTGCTCTCTGTTTCTTTCAGAAATGGAGCTGTGGAAGCTGGTAGGCCCTTTTCGATCTTCCCACTCAAGCTTCACAAAGGTTTTGAGGGATATAATTCACAGATTTTTGCTACCTTGGGAATTGAATGCAAGTGCTGTGATGGGACTGCAGGTGAATGCACTACTGTCCTCACAACTTCTTGCTCTAATCTCCATTGTTCTCCTTGGAAACAGTATTAA

Coding sequence (CDS)

CTTATCCATCCCTCTTCCAGAAGCCTAAAGCAAAAACACACAATAAAAATACCATTCGTGTGTGTCTGTGTGTGTGTACTGTTCGTTTCATCATTATTTCAAACCCAGAAAGGAAAAACCCCCAGCTTTCTTTCACCCGATTCCTTGGGGTTGATCGAGATGGGTTTTTGTAATTGGAAGTGTCTGTTTCTGGGTTTGCTTCTGCTCTCTGTTTCTTTCAGAAATGGAGCTGTGGAAGCTGGTAGGCCCTTTTCGATCTTCCCACTCAAGCTTCACAAAGGTTTTGAGGGATATAATTCACAGATTTTTGCTACCTTGGGAATTGAATGCAAGTGCTGTGATGGGACTGCAGGTGAATGCACTACTGTCCTCACAACTTCTTGCTCTAATCTCCATTGTTCTCCTTGGAAACAGTATTAA

Protein sequence

LIHPSSRSLKQKHTIKIPFVCVCVCVLFVSSLFQTQKGKTPSFLSPDSLGLIEMGFCNWKCLFLGLLLLSVSFRNGAVEAGRPFSIFPLKLHKGFEGYNSQIFATLGIECKCCDGTAGECTTVLTTSCSNLHCSPWKQY

Homology

[Close]

BLAST of Spg013340 vs. NCBI nr
Match: KAG6595355.1 (hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 7.2e-15
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 49  LGLIEMGFCNWKCLFLGLLLLSVSFRNGAVEAG--RPFSIFPLKLHK-GFEGYNSQIFAT 108
           + L EM    WK   +GL+L+   F NG V  G  R   + P+KLHK GFE Y+S + AT
Sbjct: 1   MDLREMDLREWKWALVGLVLVGACFSNGVVVEGSSRRSWMLPVKLHKGGFEAYDSNMIAT 60

Query: 109 LGIECKCCDG-TAGECTT-VLTTSCSNLHCSPWKQY 140
           LGIECKCCD    G+C+T     SCSNL CSPWK Y
Sbjct: 61  LGIECKCCDDEIGGKCSTHFAAASCSNLRCSPWKHY 96

[Close]

BLAST of Spg013340 vs. NCBI nr
Match: KAE8649554.1 (hypothetical protein Csa_018195 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 4.7e-14
Identity = 46/71 (64.79%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 54  MGFCNWKCLFLGLLLLSVSFRNGAV---EAGRPFSIFP-LKLHKGFEG-YNSQIFATLGI 113
           MGF N+KCLFLG LL  V FRNG +    + RPFSI P LKL KGF+G Y+SQIFAT+GI
Sbjct: 1   MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 114 ECKCCDGTAGE 120
           ECKCCD   G+
Sbjct: 61  ECKCCDEIGGK 71

[Close]

BLAST of Spg013340 vs. NCBI nr
Match: QCD98537.1 (hypothetical protein DEO72_LG6g3259 [Vigna unguiculata])

HSP 1 Score: 74.3 bits (181), Expect = 9.1e-10
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 58  NWKCLFLGLLLL---SVSFRNGAVEAGRPFSIFPLKLHKGFEGYNS-QIFATLGIECKCC 117
           NW  LF   LL+   ++S     VEA R  +I   + H  F+GY   Q+++TLG+ C+CC
Sbjct: 30  NWFMLFFVCLLIIARNLSVNPNTVEATRVLTINRNRSH--FKGYTKRQVYSTLGMVCECC 89

Query: 118 DGTAGECTTVLTTSCSNLHCSPWK 138
           DG AGECTT    +CSNL C PWK
Sbjct: 90  DGKAGECTTTWDDACSNLKCHPWK 111

[Close]

BLAST of Spg013340 vs. NCBI nr
Match: PON59940.1 (hypothetical protein PanWU01x14_156590 [Parasponia andersonii])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 62  LFLGLLLLSVSFRNGAVEAGRPFSIFPLKLHKGFEGYNSQIFATLGIECKCCDGTAGECT 121
           LFL LL++S S ++ AV+A          L    +   + +FATLG+ CKCCDG AGECT
Sbjct: 10  LFLLLLVVSASEKSAAVQA--------RLLSSAAQRRYADVFATLGLVCKCCDGPAGECT 69

Query: 122 TVLTTSCSNLHCSPWKQY 140
           + LT SCS + C PWKQ+
Sbjct: 70  SSLTKSCSKVQCLPWKQF 79

[Close]

BLAST of Spg013340 vs. NCBI nr
Match: CAB4284618.1 (unnamed protein product [Prunus armeniaca] >CAB4315035.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-09
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 60  KCLFLGLLLLSVSF---RNGAVEAGRPFSIFPLKLHKGFEGYNSQIFATLGIECKCCDGT 119
           K   L LLLL V F   ++ AVEA RP SI P + H       +++F+TLGI C+CCDG 
Sbjct: 5   KFYLLPLLLLIVVFASKKSSAVEA-RPLSILPQQGH-------AKVFSTLGIACECCDGA 64

Query: 120 AGECTTVLTTSCSNLHCSPWKQY 140
            GECT+  T  C+ L C PWK Y
Sbjct: 65  GGECTSTWTEPCTRLKCLPWKHY 79

[Close]

BLAST of Spg013340 vs. ExPASy TrEMBL
Match: A0A0A0KXD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.6e-26
Identity = 63/91 (69.23%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 54  MGFCNWKCLFLGLLLLSVSFRNGAV---EAGRPFSIFP-LKLHKGFEG-YNSQIFATLGI 113
           MGF N+KCLFLG LL  V FRNG +    + RPFSI P LKL KGF+G Y+SQIFAT+GI
Sbjct: 1   MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 114 ECKCCDGTAGECTTVLTTSCSNLHCSPWKQY 140
           ECKCCD   G+C+T  TTSCSNLHCSPWKQY
Sbjct: 61  ECKCCDEIGGKCSTEFTTSCSNLHCSPWKQY 91

[Close]

BLAST of Spg013340 vs. ExPASy TrEMBL
Match: A0A4D6MC20 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g3259 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.4e-10
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 58  NWKCLFLGLLLL---SVSFRNGAVEAGRPFSIFPLKLHKGFEGYNS-QIFATLGIECKCC 117
           NW  LF   LL+   ++S     VEA R  +I   + H  F+GY   Q+++TLG+ C+CC
Sbjct: 30  NWFMLFFVCLLIIARNLSVNPNTVEATRVLTINRNRSH--FKGYTKRQVYSTLGMVCECC 89

Query: 118 DGTAGECTTVLTTSCSNLHCSPWK 138
           DG AGECTT    +CSNL C PWK
Sbjct: 90  DGKAGECTTTWDDACSNLKCHPWK 111

[Close]

BLAST of Spg013340 vs. ExPASy TrEMBL
Match: A0A2P5CFV8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_156590 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.8e-10
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 62  LFLGLLLLSVSFRNGAVEAGRPFSIFPLKLHKGFEGYNSQIFATLGIECKCCDGTAGECT 121
           LFL LL++S S ++ AV+A          L    +   + +FATLG+ CKCCDG AGECT
Sbjct: 10  LFLLLLVVSASEKSAAVQA--------RLLSSAAQRRYADVFATLGLVCKCCDGPAGECT 69

Query: 122 TVLTTSCSNLHCSPWKQY 140
           + LT SCS + C PWKQ+
Sbjct: 70  SSLTKSCSKVQCLPWKQF 79

[Close]

BLAST of Spg013340 vs. ExPASy TrEMBL
Match: A0A6J5VFF2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS40202 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.5e-10
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 60  KCLFLGLLLLSVSF---RNGAVEAGRPFSIFPLKLHKGFEGYNSQIFATLGIECKCCDGT 119
           K   L LLLL V F   ++ AVEA RP SI P + H       +++F+TLGI C+CCDG 
Sbjct: 5   KFYLLPLLLLIVVFASKKSSAVEA-RPLSILPQQGH-------AKVFSTLGIACECCDGA 64

Query: 120 AGECTTVLTTSCSNLHCSPWKQY 140
            GECT+  T  C+ L C PWK Y
Sbjct: 65  GGECTSTWTEPCTRLKCLPWKHY 79

[Close]

BLAST of Spg013340 vs. ExPASy TrEMBL
Match: M5W4H4 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G264500 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.8e-10
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 60  KCLFLGLLLLSVSF---RNGAVEAGRPFSIFPLKLHKGFEGYNSQIFATLGIECKCCDGT 119
           K   L LLLL V F   ++ AVEA RP SI P       +GY +++F+TLGI C+CCDG 
Sbjct: 5   KFYLLPLLLLIVVFASKKSSAVEA-RPLSILPQ------QGY-AKVFSTLGIACECCDGA 64

Query: 120 AGECTTVLTTSCSNLHCSPWKQY 140
            GECT+  T  C+ L C PWK Y
Sbjct: 65  GGECTSTWTEPCTRLKCLPWKHY 79

The following BLAST results are available for this feature:

BLAST of Spg013340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595355.1	7.2e-15	51.04	hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8649554.1	4.7e-14	64.79	hypothetical protein Csa_018195 [Cucumis sativus]	[more]
QCD98537.1	9.1e-10	46.43	hypothetical protein DEO72_LG6g3259 [Vigna unguiculata]	[more]
PON59940.1	1.2e-09	47.44	hypothetical protein PanWU01x14_156590 [Parasponia andersonii]	[more]
CAB4284618.1	1.6e-09	48.19	unnamed protein product [Prunus armeniaca] >CAB4315035.1 unnamed protein product...	[more]

BLAST of Spg013340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg013340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXD1	2.6e-26	69.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1	[more]
A0A4D6MC20	4.4e-10	46.43	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g3259 PE=4 SV=1	[more]
A0A2P5CFV8	5.8e-10	47.44	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_156590 PE...	[more]
A0A6J5VFF2	7.5e-10	48.19	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS40202 PE=4 S...	[more]
M5W4H4	9.8e-10	49.40	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G264500 PE=4 SV=1	[more]

BLAST of Spg013340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37078:SF6	SUBFAMILY NOT NAMED	coord: 54..138
None	No IPR available	PANTHER	PTHR37078	FAMILY NOT NAMED	coord: 54..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013340.1	Spg013340.1	mRNA