Spg013184 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg013184
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProline-rich protein HaeIII subfamily 1-like
Locationscaffold1: 18054143 .. 18054739 (-)
RNA-Seq ExpressionSpg013184
SyntenySpg013184
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAACACAACAAAATGGCATCAAATAACTGTAATGTGTTTTTGGGAGCTTGTGCTATCATAGTCCTCAGATTTCACCTTACAATCTATCAAACAGATGCTAGAAAAATTTTGATAGCCAATGAAGACAACTCCATTCTAGAAAGGGAATTGAGGGATAACTTTATAAAACATCCAAAAGGCATACACATTCCTCCATCAGTCATTTTAATAGAGCCCAAGGTCAACTTTGGAATGCTACCAAAAAGCGTACGTATTCCTCCATCTGGGCCGAGTCAAAGGACATCAGACTATCTGCCTCCTACACCACGTGCTCCATCTGTCATTTTAAATAAAGAATCTAAGGTGGAATTTGGAATGTTACCAAAAGGAGCACGTATTCCTCCATCTGGACCGAGTCAAAGGACATCAGATTATCCAGCTCCACCACCTTCTGTCCCATCATTCAGTTTAAAGAAGGAATCTAGAATTAACTTTGGAATACTACCAAAAGGTGTACGTATTCCTCCGTCTAGACCAAGTCAAAGGACTTCAGACTATCCGTCTCCTCCACCACATGTTCCACCATCTGGAGGGAGTGGAAGGCACGATTAA

mRNA sequence

ATGGGAAAACACAACAAAATGGCATCAAATAACTGTAATGTGTTTTTGGGAGCTTGTGCTATCATAGTCCTCAGATTTCACCTTACAATCTATCAAACAGATGCTAGAAAAATTTTGATAGCCAATGAAGACAACTCCATTCTAGAAAGGGAATTGAGGGATAACTTTATAAAACATCCAAAAGGCATACACATTCCTCCATCAGTCATTTTAATAGAGCCCAAGGTCAACTTTGGAATGCTACCAAAAAGCGTACGTATTCCTCCATCTGGGCCGAGTCAAAGGACATCAGACTATCTGCCTCCTACACCACGTGCTCCATCTGTCATTTTAAATAAAGAATCTAAGGTGGAATTTGGAATGTTACCAAAAGGAGCACGTATTCCTCCATCTGGACCGAGTCAAAGGACATCAGATTATCCAGCTCCACCACCTTCTGTCCCATCATTCAGTTTAAAGAAGGAATCTAGAATTAACTTTGGAATACTACCAAAAGGTGTACGTATTCCTCCGTCTAGACCAAGTCAAAGGACTTCAGACTATCCGTCTCCTCCACCACATGTTCCACCATCTGGAGGGAGTGGAAGGCACGATTAA

Coding sequence (CDS)

ATGGGAAAACACAACAAAATGGCATCAAATAACTGTAATGTGTTTTTGGGAGCTTGTGCTATCATAGTCCTCAGATTTCACCTTACAATCTATCAAACAGATGCTAGAAAAATTTTGATAGCCAATGAAGACAACTCCATTCTAGAAAGGGAATTGAGGGATAACTTTATAAAACATCCAAAAGGCATACACATTCCTCCATCAGTCATTTTAATAGAGCCCAAGGTCAACTTTGGAATGCTACCAAAAAGCGTACGTATTCCTCCATCTGGGCCGAGTCAAAGGACATCAGACTATCTGCCTCCTACACCACGTGCTCCATCTGTCATTTTAAATAAAGAATCTAAGGTGGAATTTGGAATGTTACCAAAAGGAGCACGTATTCCTCCATCTGGACCGAGTCAAAGGACATCAGATTATCCAGCTCCACCACCTTCTGTCCCATCATTCAGTTTAAAGAAGGAATCTAGAATTAACTTTGGAATACTACCAAAAGGTGTACGTATTCCTCCGTCTAGACCAAGTCAAAGGACTTCAGACTATCCGTCTCCTCCACCACATGTTCCACCATCTGGAGGGAGTGGAAGGCACGATTAA

Protein sequence

MGKHNKMASNNCNVFLGACAIIVLRFHLTIYQTDARKILIANEDNSILERELRDNFIKHPKGIHIPPSVILIEPKVNFGMLPKSVRIPPSGPSQRTSDYLPPTPRAPSVILNKESKVEFGMLPKGARIPPSGPSQRTSDYPAPPPSVPSFSLKKESRINFGILPKGVRIPPSRPSQRTSDYPSPPPHVPPSGGSGRHD
Homology
BLAST of Spg013184 vs. NCBI nr
Match: KAG6603169.1 (hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.6 bits (488), Expect = 3.3e-45
Identity = 101/165 (61.21%), Postives = 118/165 (71.52%), Query Frame = 0

Query: 30  IYQTDARKILIANEDNSILERELRDNFIKHPKGIHIPPS--------VILIEPKVNFGML 89
           +Y+TDA+K++  +  ++I E EL D  +KHPKGI I  S         +   P V   ML
Sbjct: 25  VYETDAKKVVEVDVYDTIREEELTDQMVKHPKGISISSSRSSQRTLFHLTPPPPVVLRML 84

Query: 90  PKSVRIPPSGPSQRTSDYLPPTPRAPSVILNKESKVEFGMLPKGARIPPSGPSQRTSDYP 149
           PK V I PSGPSQRTSDY PP PRA SVIL+K+SK+ FGMLPKG  IPPSGPSQRTSDYP
Sbjct: 85  PKGVPISPSGPSQRTSDYPPPPPRASSVILSKQSKINFGMLPKGVPIPPSGPSQRTSDYP 144

Query: 150 APPPSVPSFSLKKESRINFGILPKGVRIPPSRPSQRTSDYPSPPP 187
            PPP   S  L K+S+INFG+LPKGV IPPS PSQRTS+YP PPP
Sbjct: 145 PPPPRASSVILNKQSKINFGMLPKGVPIPPSGPSQRTSNYPPPPP 189

BLAST of Spg013184 vs. NCBI nr
Match: XP_022967687.1 (actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima])

HSP 1 Score: 188.7 bits (478), Expect = 4.7e-44
Identity = 99/165 (60.00%), Postives = 116/165 (70.30%), Query Frame = 0

Query: 30  IYQTDARKILIANEDNSILERELRDNFIKHPKGIHIPPSVI--------LIEPKVNFGML 89
           IY+TDA+ ++  + D++I E EL D  +++PKGI I  S             P + FGML
Sbjct: 185 IYETDAKNVVEVDVDDNIREAELTDLIVQNPKGISISSSRSSQRTLFHRTPSPSLVFGML 244

Query: 90  PKSVRIPPSGPSQRTSDYLPPTPRAPSVILNKESKVEFGMLPKGARIPPSGPSQRTSDYP 149
           PK V IPPS PSQRTSDY PP PRA S+ILNK SK+  GMLP+G  IPPSGPSQRTSDYP
Sbjct: 245 PKGVPIPPSRPSQRTSDYPPPPPRASSIILNKHSKINLGMLPRGVPIPPSGPSQRTSDYP 304

Query: 150 APPPSVPSFSLKKESRINFGILPKGVRIPPSRPSQRTSDYPSPPP 187
            PPP   S  L K+S+INFG+LPKGV IPPS PSQRTS YP PPP
Sbjct: 305 PPPPHASSVILNKQSKINFGMLPKGVPIPPSGPSQRTSXYPPPPP 349

BLAST of Spg013184 vs. NCBI nr
Match: XP_038882352.1 (uncharacterized protein LOC120073615 [Benincasa hispida])

HSP 1 Score: 182.6 bits (462), Expect = 3.4e-42
Identity = 99/182 (54.40%), Postives = 119/182 (65.38%), Query Frame = 0

Query: 13  NVFLGACAIIVLRFHLTIYQTDARKILIANEDNSILERELRDNFIKHPK-GIHIP----P 72
           NVF GACA I L  H TIYQTDA+ + +  + +S +E EL D  IKHPK  IH       
Sbjct: 8   NVFFGACAFIFLGLHSTIYQTDAKNVFVVEKGDSTIENELSDENIKHPKRHIHFSLGKYK 67

Query: 73  SVILIEPKVNFGMLPKSVRIPPSGPSQRTSDYLPPTPRAPSVILNKESKVEFGMLPKGAR 132
            +  + P  N G+L K  R+PPSG SQ TSD  PP P   S+IL+KES++ F +L KG R
Sbjct: 68  RIPDLAPPFNLGILSKEERVPPSGLSQSTSDNPPPPPHVISIILHKESRINFRVLSKGNR 127

Query: 133 IPPSGPSQRTSDYPAPPPSVPSFSLKKESRINFGILPKGVRIPPSRPSQRTSDYPSPPPH 190
           IPPSGPSQRTS+ P PPP   S  L K+  INFGILPK + IPPS PS+R S+YPSPP H
Sbjct: 128 IPPSGPSQRTSESPPPPPHALSVILHKKPGINFGILPKSMHIPPSGPSKRFSNYPSPPTH 187

BLAST of Spg013184 vs. NCBI nr
Match: KAA0040932.1 (proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK10605.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 4.1e-40
Identity = 100/191 (52.36%), Postives = 124/191 (64.92%), Query Frame = 0

Query: 7   MASNNCNVFLGACAIIVLRFHLTIYQTDARKILIANEDNSILERELRDNFIKHPKGI-HI 66
           M S   N+F  ACA+I L  H  IY T+A++  + +EDNS LE  LR + I HPK + H 
Sbjct: 1   MVSVGTNIFFRACALIFLGLHFEIYLTNAKRSFVVDEDNSSLENVLRGDIINHPKKVAHF 60

Query: 67  ----PPSVILIEPKVNFGMLPKSVRIPPSGPSQRTSDYLPPTPRAPSVILNKESKVEFGM 126
               P  +  + P  + G+L K +R PPSG SQ TS+  PP+P    +IL+KES V FG+
Sbjct: 61  SWPKPKKIPDLAPPFSLGILSKGIRTPPSGLSQGTSNN-PPSPHVAPIILHKESMVNFGI 120

Query: 127 LPKGARIPPSGPSQRTSDYPAPPPSVPSFSLKKESRINFGILPKGVRIPPSRPSQRTSDY 186
           LPKG RIPPSGPS+RTSD   PPP + +F   KESRI +GILPKGVRIPPS PS+R SDY
Sbjct: 121 LPKGVRIPPSGPSRRTSD---PPPPLSNFHSIKESRIKYGILPKGVRIPPSGPSKRNSDY 180

Query: 187 PSPPP---HVP 190
             PPP   H P
Sbjct: 181 YPPPPMHLHAP 187

BLAST of Spg013184 vs. NCBI nr
Match: KAA0043502.1 (proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK01137.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 7.8e-39
Identity = 99/188 (52.66%), Postives = 123/188 (65.43%), Query Frame = 0

Query: 7   MASNNCNVFLGACAIIVLRFHLTIYQTDARKILIANEDNSILERELRDNFIKHPKG-IHI 66
           M S + N+    CAI++L  H  IYQT+ R +    EDNS+ E EL+ N I HPK  IH 
Sbjct: 1   MMSISSNMTFKTCAIVLLGLHFGIYQTNGRNLFEVKEDNSVFENELKANSIIHPKQYIHF 60

Query: 67  PPSVILIEPKVN----FGMLPKSVRIPPSGPSQRTSDYLPPTPRAPSVILNKESKVEFGM 126
             +    +P+ +    FG+  K VRIPPSGPSQR+SD    +P +PS+IL KES++ FG+
Sbjct: 61  SLTKSKGKPEFDTHFRFGIFSKDVRIPPSGPSQRSSD----SPPSPSMILPKESRINFGI 120

Query: 127 LPKGARIPPSGPSQRTSDYPAPPPSVPSFSLKKESRINFGILPKGVRIPPSRPSQRTSDY 186
           LPKG+RIPPSGPSQR SD P P    PS  L K S + FG+LPKG  IPPS PS+RTSD 
Sbjct: 121 LPKGSRIPPSGPSQRFSDSPLP----PSTFLHKGSNMIFGMLPKGHHIPPSGPSKRTSDN 180

Query: 187 PSPPPHVP 190
           P PPPH P
Sbjct: 181 PPPPPHSP 180

BLAST of Spg013184 vs. ExPASy TrEMBL
Match: A0A6J1HRH7 (actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3661 GN=LOC111467141 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 99/165 (60.00%), Postives = 116/165 (70.30%), Query Frame = 0

Query: 30  IYQTDARKILIANEDNSILERELRDNFIKHPKGIHIPPSVI--------LIEPKVNFGML 89
           IY+TDA+ ++  + D++I E EL D  +++PKGI I  S             P + FGML
Sbjct: 185 IYETDAKNVVEVDVDDNIREAELTDLIVQNPKGISISSSRSSQRTLFHRTPSPSLVFGML 244

Query: 90  PKSVRIPPSGPSQRTSDYLPPTPRAPSVILNKESKVEFGMLPKGARIPPSGPSQRTSDYP 149
           PK V IPPS PSQRTSDY PP PRA S+ILNK SK+  GMLP+G  IPPSGPSQRTSDYP
Sbjct: 245 PKGVPIPPSRPSQRTSDYPPPPPRASSIILNKHSKINLGMLPRGVPIPPSGPSQRTSDYP 304

Query: 150 APPPSVPSFSLKKESRINFGILPKGVRIPPSRPSQRTSDYPSPPP 187
            PPP   S  L K+S+INFG+LPKGV IPPS PSQRTS YP PPP
Sbjct: 305 PPPPHASSVILNKQSKINFGMLPKGVPIPPSGPSQRTSXYPPPPP 349

BLAST of Spg013184 vs. ExPASy TrEMBL
Match: A0A5D3CGG1 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00020 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.0e-40
Identity = 100/191 (52.36%), Postives = 124/191 (64.92%), Query Frame = 0

Query: 7   MASNNCNVFLGACAIIVLRFHLTIYQTDARKILIANEDNSILERELRDNFIKHPKGI-HI 66
           M S   N+F  ACA+I L  H  IY T+A++  + +EDNS LE  LR + I HPK + H 
Sbjct: 1   MVSVGTNIFFRACALIFLGLHFEIYLTNAKRSFVVDEDNSSLENVLRGDIINHPKKVAHF 60

Query: 67  ----PPSVILIEPKVNFGMLPKSVRIPPSGPSQRTSDYLPPTPRAPSVILNKESKVEFGM 126
               P  +  + P  + G+L K +R PPSG SQ TS+  PP+P    +IL+KES V FG+
Sbjct: 61  SWPKPKKIPDLAPPFSLGILSKGIRTPPSGLSQGTSNN-PPSPHVAPIILHKESMVNFGI 120

Query: 127 LPKGARIPPSGPSQRTSDYPAPPPSVPSFSLKKESRINFGILPKGVRIPPSRPSQRTSDY 186
           LPKG RIPPSGPS+RTSD   PPP + +F   KESRI +GILPKGVRIPPS PS+R SDY
Sbjct: 121 LPKGVRIPPSGPSRRTSD---PPPPLSNFHSIKESRIKYGILPKGVRIPPSGPSKRNSDY 180

Query: 187 PSPPP---HVP 190
             PPP   H P
Sbjct: 181 YPPPPMHLHAP 187

BLAST of Spg013184 vs. ExPASy TrEMBL
Match: A0A5D3BP86 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00050 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.8e-39
Identity = 99/188 (52.66%), Postives = 123/188 (65.43%), Query Frame = 0

Query: 7   MASNNCNVFLGACAIIVLRFHLTIYQTDARKILIANEDNSILERELRDNFIKHPKG-IHI 66
           M S + N+    CAI++L  H  IYQT+ R +    EDNS+ E EL+ N I HPK  IH 
Sbjct: 1   MMSISSNMTFKTCAIVLLGLHFGIYQTNGRNLFEVKEDNSVFENELKANSIIHPKQYIHF 60

Query: 67  PPSVILIEPKVN----FGMLPKSVRIPPSGPSQRTSDYLPPTPRAPSVILNKESKVEFGM 126
             +    +P+ +    FG+  K VRIPPSGPSQR+SD    +P +PS+IL KES++ FG+
Sbjct: 61  SLTKSKGKPEFDTHFRFGIFSKDVRIPPSGPSQRSSD----SPPSPSMILPKESRINFGI 120

Query: 127 LPKGARIPPSGPSQRTSDYPAPPPSVPSFSLKKESRINFGILPKGVRIPPSRPSQRTSDY 186
           LPKG+RIPPSGPSQR SD P P    PS  L K S + FG+LPKG  IPPS PS+RTSD 
Sbjct: 121 LPKGSRIPPSGPSQRFSDSPLP----PSTFLHKGSNMIFGMLPKGHHIPPSGPSKRTSDN 180

Query: 187 PSPPPHVP 190
           P PPPH P
Sbjct: 181 PPPPPHSP 180

BLAST of Spg013184 vs. ExPASy TrEMBL
Match: A0A438DWZ1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_074658 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 80/173 (46.24%), Postives = 88/173 (50.87%), Query Frame = 0

Query: 55  NFIKHPKGIHIPPS--------------VILIEPKVNFGMLPKSVRIPPSGPSQRTSDYL 114
           NF+  PKG  IPPS                   P + FGMLPK V IPPSGPSQRTSD  
Sbjct: 37  NFVMLPKGDPIPPSGPSHRGSETPPPPHSFARGPTLRFGMLPKGVPIPPSGPSQRTSD-- 96

Query: 115 PPTPRAPSVILNKESKVEFGMLPKGARIPPSGPSQRTSDYPAPPPSVPSFSLKKESRINF 174
           PP P  P     + S   FGMLPKG  IPPSGPS R S+ P PP      S  +   + F
Sbjct: 97  PPPPPQP---FARASVFRFGMLPKGDPIPPSGPSHRGSETPPPP-----HSFARGPTLRF 156

Query: 175 GILPKGVRIPPSRPSQRTSDYPSPP-----------------PHVPPSGGSGR 197
           G+LPKG  IPPS PSQRTSD P PP                   +PPSG S R
Sbjct: 157 GMLPKGDPIPPSGPSQRTSDPPPPPQPFARASVFRFGMLPKGDPIPPSGPSHR 199

BLAST of Spg013184 vs. ExPASy TrEMBL
Match: A0A6A5P9E6 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00004179 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.1e-21
Identity = 68/138 (49.28%), Postives = 81/138 (58.70%), Query Frame = 0

Query: 61  KGIHIPPSV------------ILIEPKVNFGMLPKSVRIPPSGPSQRTSDYLPPTPRAPS 120
           KG+  PPSV            I     +N+GMLPK V +PPSGPS +TSD   P P  P 
Sbjct: 48  KGLPAPPSVPSKKTSLPPNSDIETFSNINYGMLPKGVPVPPSGPSNKTSD---PPPPPPK 107

Query: 121 VILNKESKVEFGMLPKGARIPPSGPSQRTSDYPAPPPSVPSFSLKKESRINFGILPKGVR 180
             +   S + FGMLPKG R PPSGPS +TSD   PPP  P + ++  S INFG+LPKG  
Sbjct: 108 YDIETFSNINFGMLPKG-RTPPSGPSNKTSD---PPPPPPKYDIETFSNINFGMLPKGT- 167

Query: 181 IPPSRPSQRTSDYPSPPP 187
            PPS  S +TSD P PPP
Sbjct: 168 TPPSGHSNKTSDPPPPPP 177

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6603169.13.3e-4561.21hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022967687.14.7e-4460.00actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima][more]
XP_038882352.13.4e-4254.40uncharacterized protein LOC120073615 [Benincasa hispida][more]
KAA0040932.14.1e-4052.36proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK1060... [more]
KAA0043502.17.8e-3952.66proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK0113... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HRH72.3e-4460.00actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3... [more]
A0A5D3CGG12.0e-4052.36Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5D3BP863.8e-3952.66Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A438DWZ11.2e-2146.24Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_074658 PE=4 SV=1[more]
A0A6A5P9E66.1e-2149.28Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00004179 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..107
NoneNo IPR availablePANTHERPTHR33599:SF13FORMIN-LIKE PROTEIN 20coord: 75..184
NoneNo IPR availablePANTHERPTHR33599:SF13FORMIN-LIKE PROTEIN 20coord: 53..142
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 6.0
IPR039639Protein IDA-likePANTHERPTHR33599PROTEIN IDA-LIKE 5coord: 75..184
IPR039639Protein IDA-likePANTHERPTHR33599PROTEIN IDA-LIKE 5coord: 53..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg013184.1Spg013184.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010227 floral organ abscission