Spg012529 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg012529
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description4F5 domain-containing protein
Locationscaffold1: 8128263 .. 8130349 (-)
RNA-Seq ExpressionSpg012529
SyntenySpg012529
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCGACCCCTTCCAAGCGAAGACGATCTCTTCTTCGGATTAGGGTTTCAGATTATTGAGGTTCTCTCTGGGTTCCTCGTAAAAATGGGAGGGGGGAACGGGCAGAAAGCGAAGATGGCTCGCGAGAAGAACATGGAGAAGCTGAAAGCTCCTAAGGGTGAGTTTTCTCTCTAATTCTTCGCATTTATTTATAGACACTTCCTTTGATTTGACTACTTTTGTCTGGTTTTCGAGTGAATTTCTTGAACTATCGATAGTCATTGTTCTTGGAACTAATCAAAGTGACGACTCTGTTAGGGTGAAATCATTCTAATTGTTTATCCTGCTTTTCACACCCAACACTAAGAAGGTTTTATTTATTTTGGGGGGGAAGCTATTGAGTTGATTATTTTCGTCGGTTATTCCGGTTAATGTTGAAGATCTCGTTTGGTCTGTTATCAGGAAGTCAGCTCGAAGCAAACAAGAAAGCAATGTCTATTCAGGTATGTCTTGACAATGTTTGATGCTAGTTTATATGAAGATAGCTGAATCAGTTACATTGTTGATGCGAATTTATTTGTCCATGTCGATCTTTGTTTAAAAGTGTTCATAGGAATTGGTTTCTTTTTTCCACCGCTTGTACCTTAGTTTCTAGGTTATGCCGTACATTTTGACGTCTCAGAATTGTTGAATTGCAATATATTGAATTGCACATTCAGTAGAAGAGTTTCTTCGGTTAGATAGTAAGGATACCCAACTTGCGAATGGAAGGCTGGTGTCCAATTATTAAGCAAGTCTTTCAGTTCTGTTTAGGAACTTACCATTAGTGCTATGGACTAGACTATGCAGTTCATATCTGTATCGTTCAGTAAGTTAGGAAGGTATTGCTGACGGCTATAGCCTGCAGTTAGTGTGATGGTTTGAAGCATGTAAACTTCATTAATGTCAAAGTCTTGATGTCAGACATGTTTGGGGCGCTGACAAGCTCCATAGGCCTAAGCCACTATAGAAGAAATAACCTTTCGGGCCACCATCATTATTCCTGATTTTAGAAATAATGTTTTGTTCTCTCTGTCATTTATCGTTTTTTATTCCACATCTATCCTTCCTAACTGGGGCATGTTGTTTAAATGCTTGTCAATTGTTGAATTTCTCATTTGAGCTTTAGCATTATTCAACTAGAACGATTTTTTTTGAAATTTTTTTGAAATTTCAGACAACCTCTGAAAAGCTGTGTTCTGTCCTGTAGATGCAGAAGTATGTGAACTGAACTCTGAACATCATAATCCATGGGTTTATTGACAAGATTATTCTTTTAAAGGCTGCAACTTTCTGAGCCCTATGTTATTCTTGCTCGTAGAGGATTCAAAAGTTATATTGGCAGTGTGTGCTACTGTTATATAGCTTTTATGACATTTACTCTTGATTTTCTTTTCTCATGGCTGCTTAGCTTTCGTATATTGAAGAAAAATATCTGTAGGGATTTAACATGAAATATAATAGGTTCATTCAGTTCTGCTAATTTTCGATTACACTAGATGCCATGGATAATCAAGCATTTTCTATGAAACTGAATGCAGTGCAAGGTATGCATGCAAACCTTTATCTGCACCACCTCAGAGGTCAAATGCAGGGAACATGCTGAGGCCAAGCACCCAAAATCTGATGTCTATACTTGTTTCCCGCATCTTAAAAAGTGAAAGAATAAACAAGAAAGAACAGCGTCGAGGCACGTTCCGGTAGCAACCTCCTTGCCTCATTGTTTACCTGTGATTCTTCGCCTTTTCGACTCTGTAGCAGGATGCATGATTTCTGAACATGTGCTTTGTTTATGGTCTTGCTTCTCATGTATCAGAAAATTGGCTTTGGATTAATATATTAGTGGTATATTTTCCATGGTCTTATTTAACTGGCGTGTAATAGCTCACTCTTAGGTGGTTTGCTCTAGATTCTCTATCGAATTTACATGTTAGTTCTGTTCTGGTATCTTTACTTTACAAAGTTTGAAATCGACGAATTTTCTGCGATTTTACCGCATGCTAAATTTTGTGAAGAACATGTGACGTGGGTTTTCTTTACCGAAAATTTCAACGGGCTCCCATATGAG

mRNA sequence

ATGGGAGGGGGGAACGGGCAGAAAGCGAAGATGGCTCGCGAGAAGAACATGGAGAAGCTGAAAGCTCCTAAGGGAAGTCAGCTCGAAGCAAACAAGAAAGCAATGTCTATTCAGATGCAGAATGCAAGGTATGCATGCAAACCTTTATCTGCACCACCTCAGAGGTCAAATGCAGGGAACATGCTGAGGCCAAGCACCCAAAATCTGATGTCTATACTTGTTTCCCGCATCTTAAAAAGTGAAAGAATAAACAAGAAAGAACAGCGTCGAGGCACGTTCCGGTAG

Coding sequence (CDS)

ATGGGAGGGGGGAACGGGCAGAAAGCGAAGATGGCTCGCGAGAAGAACATGGAGAAGCTGAAAGCTCCTAAGGGAAGTCAGCTCGAAGCAAACAAGAAAGCAATGTCTATTCAGATGCAGAATGCAAGGTATGCATGCAAACCTTTATCTGCACCACCTCAGAGGTCAAATGCAGGGAACATGCTGAGGCCAAGCACCCAAAATCTGATGTCTATACTTGTTTCCCGCATCTTAAAAAGTGAAAGAATAAACAAGAAAGAACAGCGTCGAGGCACGTTCCGGTAG

Protein sequence

MGGGNGQKAKMAREKNMEKLKAPKGSQLEANKKAMSIQMQNARYACKPLSAPPQRSNAGNMLRPSTQNLMSILVSRILKSERINKKEQRRGTFR
Homology
[Close]
BLAST of Spg012529 vs. NCBI nr
Match: KAF9668491.1 (hypothetical protein SADUNF_Sadunf14G0009200 [Salix dunnii])

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-08
Identity = 52/93 (55.91%), Postives = 61/93 (65.59%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLK-APKGSQLEANKKAMSIQMQ-NARYACKPLSAPPQRSNA 60
          MGGGNGQKAKMAREKN+EK K A KGSQLE+NKKAMSIQ +   +Y         +R   
Sbjct: 1  MGGGNGQKAKMAREKNLEKQKAASKGSQLESNKKAMSIQCKATVQYRFLNEFVASER--- 60

Query: 61 GNMLRPSTQNLMSILVSRILKSERINKKEQRRG 92
          G+M +PST NL SI VS   +    N+ E RRG
Sbjct: 61 GSMQKPSTPNLTSIHVSPTSR----NEDESRRG 86

[Close]
BLAST of Spg012529 vs. NCBI nr
Match: PON54269.1 (hypothetical protein PanWU01x14_196590 [Parasponia andersonii])

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-08
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKAPKGSQLEANKKAMSIQMQNARY 45
          MGGGNGQKAKMARE+NMEK KA KGSQLE+NKKAMSIQ+   RY
Sbjct: 1  MGGGNGQKAKMARERNMEKQKAAKGSQLESNKKAMSIQVSRERY 44

[Close]
BLAST of Spg012529 vs. NCBI nr
Match: PON91090.1 (hypothetical protein TorRG33x02_131210 [Trema orientale])

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-08
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKAPKGSQLEANKKAMSIQMQNARY 45
          MGGGNGQKAKMARE+NMEK KA KGSQLE+NKKAMSIQ+   RY
Sbjct: 1  MGGGNGQKAKMARERNMEKQKAAKGSQLESNKKAMSIQVSRERY 44

[Close]
BLAST of Spg012529 vs. NCBI nr
Match: KAF3663051.1 (hypothetical protein FXO38_10838 [Capsicum annuum])

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKAPKGSQLEANKKAMSIQ 39
          MGGGNGQKAKMAREKNMEK+KA KGSQLEANKKAMSIQ
Sbjct: 1  MGGGNGQKAKMAREKNMEKMKAQKGSQLEANKKAMSIQ 38

[Close]
BLAST of Spg012529 vs. NCBI nr
Match: KAF3671733.1 (putative acyl-CoA-binding domain-containing protein 3-like [Capsicum annuum])

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1   MGGGNGQKAKMAREKNMEKLKAPKGSQLEANKKAMSIQ 39
           MGGGNGQKAKMAREKNMEK+KA KGSQLEANKKAMSIQ
Sbjct: 184 MGGGNGQKAKMAREKNMEKMKAQKGSQLEANKKAMSIQ 221

[Close]
BLAST of Spg012529 vs. ExPASy Swiss-Prot
Match: O64818 (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-06
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKAP-KGSQLEANKKAMSIQ 39
          MGGGN QK+ MAR KN+EK KA  KGSQLEANKKAMSIQ
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQ 39

[Close]
BLAST of Spg012529 vs. ExPASy TrEMBL
Match: A0A2P5BZT1 (4F5 domain-containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_196590 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKAPKGSQLEANKKAMSIQMQNARY 45
          MGGGNGQKAKMARE+NMEK KA KGSQLE+NKKAMSIQ+   RY
Sbjct: 1  MGGGNGQKAKMARERNMEKQKAAKGSQLESNKKAMSIQVSRERY 44

[Close]
BLAST of Spg012529 vs. ExPASy TrEMBL
Match: A0A2P5EZX3 (4F5 domain-containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_131210 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKAPKGSQLEANKKAMSIQMQNARY 45
          MGGGNGQKAKMARE+NMEK KA KGSQLE+NKKAMSIQ+   RY
Sbjct: 1  MGGGNGQKAKMARERNMEKQKAAKGSQLESNKKAMSIQVSRERY 44

[Close]
BLAST of Spg012529 vs. ExPASy TrEMBL
Match: A0A2G2X1K7 (Uncharacterized protein (Fragment) OS=Capsicum baccatum OX=33114 GN=CQW23_11133 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-08
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKAPKGSQLEANKKAMSIQ 39
          MGGGNGQKAKMAREKNMEK+KA KGSQLEANKKAMSIQ
Sbjct: 54 MGGGNGQKAKMAREKNMEKMKAQKGSQLEANKKAMSIQ 91

[Close]
BLAST of Spg012529 vs. ExPASy TrEMBL
Match: A0A2G3CPQ2 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_11864 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-08
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1   MGGGNGQKAKMAREKNMEKLKAPKGSQLEANKKAMSIQ 39
           MGGGNGQKAKMAREKNMEK+KA KGSQLEANKKAMSIQ
Sbjct: 157 MGGGNGQKAKMAREKNMEKMKAQKGSQLEANKKAMSIQ 194

[Close]
BLAST of Spg012529 vs. ExPASy TrEMBL
Match: A0A1U8GJE5 (uncharacterized protein At2g23090 OS=Capsicum annuum OX=4072 GN=LOC107867221 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-08
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKAPKGSQLEANKKAMSIQ 39
          MGGGNGQKAKMAREKNMEK+KA KGSQLEANKKAMSIQ
Sbjct: 1  MGGGNGQKAKMAREKNMEKMKAQKGSQLEANKKAMSIQ 38

[Close]
BLAST of Spg012529 vs. TAIR 10
Match: AT2G23090.1 (Uncharacterised protein family SERF )

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKAP-KGSQLEANKKAMSIQ 39
          MGGGN QK+ MAR KN+EK KA  KGSQLEANKKAMSIQ
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQ 39

The following BLAST results are available for this feature:
BLAST of Spg012529 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF9668491.13.4e-0855.91hypothetical protein SADUNF_Sadunf14G0009200 [Salix dunnii][more]
PON54269.14.4e-0881.82hypothetical protein PanWU01x14_196590 [Parasponia andersonii][more]
PON91090.14.4e-0881.82hypothetical protein TorRG33x02_131210 [Trema orientale][more]
KAF3663051.15.8e-0894.74hypothetical protein FXO38_10838 [Capsicum annuum][more]
KAF3671733.15.8e-0894.74putative acyl-CoA-binding domain-containing protein 3-like [Capsicum annuum][more]
BLAST of Spg012529 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O648182.5e-0679.49Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 P... [more]
BLAST of Spg012529 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5BZT12.1e-0881.824F5 domain-containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_196... [more]
A0A2P5EZX32.1e-0881.824F5 domain-containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_131210 P... [more]
A0A2G2X1K72.8e-0894.74Uncharacterized protein (Fragment) OS=Capsicum baccatum OX=33114 GN=CQW23_11133 ... [more]
A0A2G3CPQ22.8e-0894.74Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_11864 PE=4 SV=1[more]
A0A1U8GJE52.8e-0894.74uncharacterized protein At2g23090 OS=Capsicum annuum OX=4072 GN=LOC107867221 PE=... [more]
BLAST of Spg012529 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G23090.11.8e-0779.49Uncharacterised protein family SERF [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026939ZNF706/At2g23090 superfamilyGENE3D4.10.1050.10coord: 1..56
e-value: 6.7E-11
score: 44.4
IPR007513Uncharacterised protein family SERF, N-terminalPFAMPF044194F5coord: 3..35
e-value: 1.4E-6
score: 29.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..26
NoneNo IPR availablePANTHERPTHR33788:SF12SUBFAMILY NOT NAMEDcoord: 1..40
NoneNo IPR availableSUPERFAMILY118359Expressed protein At2g23090/F21P24.15coord: 1..40
IPR039713At2g23090-likePANTHERPTHR33788OS07G0114300 PROTEINcoord: 1..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg012529.1Spg012529.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane