Spg012512 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012512
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Location	scaffold1: 6658793 .. 6660623 (+)
RNA-Seq Expression	Spg012512
Synteny	Spg012512

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGCCTGCGAACAGCAAAGTCGTTCTATTGCTATCCTTTTCTCCATAGCCATGTCTTTATGTGTTACATTCATATATCAAATTGTTGATCGCAATGTATGTGTTGTGGGTGATTCTAAAACTCTAGAATCCAAGGACTAAGCAGGACAACGCAGCACTAACACGAAAGCTTGACTAGGAAGCGGACTTCGGAGGAGAGCGAGTCGAAGGGTTTGGGCCGAGACGGCCTCGGCCCACTCATGTGGGCCGAGTTCCCTCACCCCCGTTTGGTCCCTGGTGCCTCTGGCCACCCCAGTCCCACCTGATTTAGTCCGAAGCGCCTTCGAACGCCTAAAAACCCTAGATGAGGAACAAGTATTTAAACCTTTTTTCATCATTGAAGAAAGGGATCTCCGAACTCTATTATCTGATTCTCCTCTTGCTCTTACTCTTTTGCTTCCCATCGTTCTGCTTGCTGACTTAAGCATCAGAGGCGGTGTGGCAACCACCACACCGGTGTGCAGGTTTTACTGTCTTGAAGGCCACGCCTTCTCCTCTCTCATACAAATTCACCGTTGGTGACACGTGAAGGTAAGATGAGTTCCTTCTGTTCAGATTTTGCCATCATCAGTGTATGAAAATCCAACTTAGTATATGAAAATCCAATCCCAACAAAATTATATAATGAGTCTTCCCCTTCCCCTTCCCCTTCCCCAAGAAATCGATTACATCAAAGAATCAATAGACCAGACTATGGGCCTCCCTTTCTGCACGGAGACTCTGGAATTGAAACTCTTCGCCTCCGAAGCCCCGCCCAACGCCTCGAAGCCCGATGCCTCTCTTTGCAGTCTAAATTAAACCAACAAATTGTCTCCACTAAAACTGCCACAGTCTGTATTTTGCTACCTTTCTTTTTATCTCCATTGATCTTGATATGTTTCAGAGATTCATTACGTTGTTCTGGTTCAGGCGGAAGCAAAGTTGAGTGCGCAGAGCCTGAAGAAAGTCATCGAGAAAAACGAACAATTGAGGGAAGAGAATTCGGGTTTGGTGGAGCAATGCAAGAAAATGAAAGCCATCGCCAACAGAGGGAAATCCGTCGTCAATCGCGCCAAGGAAGCAGAAGCTCGTGTGCGTGAGTTGGAAGACGAGGTCAAAGGATTGACAAAGGATTTGAATTTCTCATTTTCTCATACTAAGGAAACAACTTAGTATATGAAAATCCAATTCCCCCTCAAATGATCCGAAGCAGGTGGATTAAAAAGTATATATTAGAATACCTCCAAGCGAAAGAAAATCCTCCAACCAATTCGAACTGGTGTCCTGTTAATAGAGGCCATCCAGTAAATTGGCTTCCTTCACCGGTAGGGAGCTGGAAGATGAACGTCGATGCGACATGGAAAGCTGGCTTACCTTGCATTGGAATCAGAGTTGTTTGTAGGGACTCAACTGGCTTACTGAAGGGAGCCTCTGCTGTCTGCATTGATATGGATTTTCCTTCCCCAGTGGTTGATTGAAAGTGATCCTGAAAGGCTTAAAATTGGATGAATCTGTAGGGTGTAAGAACATGAAGATGGAATCTGATTGCCTCCAAGCGATTAATCTAATGTCAAGGGAAGGGGAAGTGAAGAACGAAATGGGAACAGTGGTGGAAGAAATTCGAAATCGTGCCTTGTTCTTCTCTGAGATTTCCTTTTCATATATTTCTAGAAATTGTAATATTGTAGCTGATGCCATTGCAAAATGGGTTAAAAATGAAAGGAAGAATGATGTATGGATCCACTTCTTTCCAGAGTGGCTGAATGAGTTGGTCTGTAATGATCGTTATTCTGTTGCCCTCGTGGCATAA

mRNA sequence

ATGCTAGCCTGCGAACAGCAAAGTCGTTCTATTGCTATCCTTTTCTCCATAGCCATGTCTTTATGTGTTACATTCATATATCAAATTGTTGATCGCAATGTATGTGTTGTGGGAAGCGGACTTCGGAGGAGAGCGAGTCGAAGGGTTTGGGCCGAGACGGCCTCGGCCCACTCATGTGGGCCGAGTTCCCTCACCCCCGTTTGGTCCCTGGTGCCTCTGGCCACCCCAGTCCCACCTGATTTAGTCCGAAGCGCCTTCGAACGCCTAAAAACCCTAGATGAGGAACAAGTATTTAAACCTTTTTTCATCATTGAAGAAAGGGATCTCCGAACTCTATTATCTGATTCTCCTCTTGCTCTTACTCTTTTGCTTCCCATCGTTCTGCTTGCTGACTTAAGCATCAGAGGCGGTGTGGCAACCACCACACCGGTGTGCAGGTTTTACTGTCTTGAAGGCCACGCCTTCTCCTCTCTCATACAAATTCACCAGATTCATTACGTTGTTCTGGTTCAGGCGGAAGCAAAGTTGAGTGCGCAGAGCCTGAAGAAAGTCATCGAGAAAAACGAACAATTGAGGGAAGAGAATTCGGGTTTGGTGGAGCAATGCAAGAAAATGAAAGCCATCGCCAACAGAGGGAAATCCGTCGTCAATCGCGCCAAGGAAGCAGAAGCTCGTGTGCGTGAGTTGGAAGACGAGAGGCCATCCAGTAAATTGGCTTCCTTCACCGGTAGGGAGCTGGAAGATGAACGTCGATGCGACATGGAAAGCTGGCTTACCTTGCATTGGAATCAGAGGTGTAAGAACATGAAGATGGAATCTGATTGCCTCCAAGCGATTAATCTAATGTCAAGGGAAGGGGAAGTGAAGAACGAAATGGGAACAGTGGTGGAAGAAATTCGAAATCGTGCCTTGTTCTTCTCTGAGATTTCCTTTTCATATATTTCTAGAAATTGTAATATTGTAGCTGATGCCATTGCAAAATGGGTTAAAAATGAAAGGAAGAATGATGTATGGATCCACTTCTTTCCAGAGTGGCTGAATGAGTTGGTCTGTAATGATCGTTATTCTGTTGCCCTCGTGGCATAA

Coding sequence (CDS)

ATGCTAGCCTGCGAACAGCAAAGTCGTTCTATTGCTATCCTTTTCTCCATAGCCATGTCTTTATGTGTTACATTCATATATCAAATTGTTGATCGCAATGTATGTGTTGTGGGAAGCGGACTTCGGAGGAGAGCGAGTCGAAGGGTTTGGGCCGAGACGGCCTCGGCCCACTCATGTGGGCCGAGTTCCCTCACCCCCGTTTGGTCCCTGGTGCCTCTGGCCACCCCAGTCCCACCTGATTTAGTCCGAAGCGCCTTCGAACGCCTAAAAACCCTAGATGAGGAACAAGTATTTAAACCTTTTTTCATCATTGAAGAAAGGGATCTCCGAACTCTATTATCTGATTCTCCTCTTGCTCTTACTCTTTTGCTTCCCATCGTTCTGCTTGCTGACTTAAGCATCAGAGGCGGTGTGGCAACCACCACACCGGTGTGCAGGTTTTACTGTCTTGAAGGCCACGCCTTCTCCTCTCTCATACAAATTCACCAGATTCATTACGTTGTTCTGGTTCAGGCGGAAGCAAAGTTGAGTGCGCAGAGCCTGAAGAAAGTCATCGAGAAAAACGAACAATTGAGGGAAGAGAATTCGGGTTTGGTGGAGCAATGCAAGAAAATGAAAGCCATCGCCAACAGAGGGAAATCCGTCGTCAATCGCGCCAAGGAAGCAGAAGCTCGTGTGCGTGAGTTGGAAGACGAGAGGCCATCCAGTAAATTGGCTTCCTTCACCGGTAGGGAGCTGGAAGATGAACGTCGATGCGACATGGAAAGCTGGCTTACCTTGCATTGGAATCAGAGGTGTAAGAACATGAAGATGGAATCTGATTGCCTCCAAGCGATTAATCTAATGTCAAGGGAAGGGGAAGTGAAGAACGAAATGGGAACAGTGGTGGAAGAAATTCGAAATCGTGCCTTGTTCTTCTCTGAGATTTCCTTTTCATATATTTCTAGAAATTGTAATATTGTAGCTGATGCCATTGCAAAATGGGTTAAAAATGAAAGGAAGAATGATGTATGGATCCACTTCTTTCCAGAGTGGCTGAATGAGTTGGTCTGTAATGATCGTTATTCTGTTGCCCTCGTGGCATAA

Protein sequence

MLACEQQSRSIAILFSIAMSLCVTFIYQIVDRNVCVVGSGLRRRASRRVWAETASAHSCGPSSLTPVWSLVPLATPVPPDLVRSAFERLKTLDEEQVFKPFFIIEERDLRTLLSDSPLALTLLLPIVLLADLSIRGGVATTTPVCRFYCLEGHAFSSLIQIHQIHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDERPSSKLASFTGRELEDERRCDMESWLTLHWNQRCKNMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAKWVKNERKNDVWIHFFPEWLNELVCNDRYSVALVA

Homology

[Close]

BLAST of Spg012512 vs. NCBI nr
Match: XP_038885825.1 (uncharacterized protein LOC120076121 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-11
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 173 EAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDE 232
           EAKL+AQ LKK IEKN+QL EENS LVEQCKKMKA  NRGK  ++RAKE + RV ELEDE
Sbjct: 31  EAKLNAQGLKKAIEKNQQLSEENSRLVEQCKKMKAFMNRGKLALDRAKETQVRVHELEDE 90

Query: 233 RPSSKL 239
               KL
Sbjct: 91  VEELKL 96

[Close]

BLAST of Spg012512 vs. NCBI nr
Match: XP_022131622.1 (uncharacterized protein LOC111004753 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 4.0e-09
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 162 HQIHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKE 221
           HQI      +AEAKLSAQ+LKK IEKN  L EENS L  QCKK+KA AN+ K  V+RA E
Sbjct: 56  HQILAAQSSKAEAKLSAQALKKAIEKNGDLSEENSALTLQCKKLKAFANKLKMAVDRANE 115

Query: 222 AEARVRELEDE 233
             ARVRELE E
Sbjct: 116 ETARVRELEQE 126

[Close]

BLAST of Spg012512 vs. NCBI nr
Match: KAG7020228.1 (hypothetical protein SDJN02_16911, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-07
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 150 LEGHAFSSLIQIHQ-IHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAI 209
           LE    S   +++Q I      QAEA +SAQ LKK IE+NE+L +ENS L +Q K+MK I
Sbjct: 36  LEAQCLSLQSKLNQHIRSTKAAQAEAMMSAQGLKKAIERNERLSKENSRLEDQLKRMKVI 95

Query: 210 ANRGKSVVNRAKEAEARVRELEDE 233
           A+RGK  ++ AKEAE R R+L DE
Sbjct: 96  ASRGKMAIHGAKEAEDRARKLNDE 119

[Close]

BLAST of Spg012512 vs. NCBI nr
Match: KAG6585310.1 (hypothetical protein SDJN03_18043, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-07
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 150 LEGHAFSSLIQIHQ-IHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAI 209
           LE    S   +++Q I      QAEA +SAQ LKK IE+NE+L +ENS L +Q K+MK I
Sbjct: 41  LEAQCLSLQSKLNQHIRSTKAAQAEAMMSAQGLKKAIERNERLSKENSRLEDQLKRMKVI 100

Query: 210 ANRGKSVVNRAKEAEARVRELEDE 233
           A+RGK  ++ AKEAE R R+L DE
Sbjct: 101 ASRGKMAIHGAKEAEDRARKLNDE 124

[Close]

BLAST of Spg012512 vs. NCBI nr
Match: AFP55557.1 (non-ltr retroelement reverse transcriptase [Rosa rugosa])

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-07
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 258  LTLHWNQRCKNMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRN 317
            L L   +R +N+ +ESDCL+AI+L++ +       G +VE+I+N     +  S  ++ R 
Sbjct: 1552 LDLVVERRLRNIMVESDCLEAIHLLNSKERCLAPEGGLVEDIQNTMALVNISSIYHVRRE 1611

Query: 318  CNIVADAIAKWVKNERKNDVWIHFFPEWLNELVCNDR 355
             N  A AIAK+V       VW+   P+WL  L+C+D+
Sbjct: 1612 GNTAAHAIAKFVARNNGRYVWLEDGPDWLMSLICHDK 1648

[Close]

BLAST of Spg012512 vs. ExPASy TrEMBL
Match: A0A6J1BRI9 (uncharacterized protein LOC111004753 OS=Momordica charantia OX=3673 GN=LOC111004753 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-09
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 162 HQIHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKE 221
           HQI      +AEAKLSAQ+LKK IEKN  L EENS L  QCKK+KA AN+ K  V+RA E
Sbjct: 56  HQILAAQSSKAEAKLSAQALKKAIEKNGDLSEENSALTLQCKKLKAFANKLKMAVDRANE 115

Query: 222 AEARVRELEDE 233
             ARVRELE E
Sbjct: 116 ETARVRELEQE 126

[Close]

BLAST of Spg012512 vs. ExPASy TrEMBL
Match: J7G0Q7 (Non-ltr retroelement reverse transcriptase OS=Rosa rugosa OX=74645 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-07
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 258  LTLHWNQRCKNMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRN 317
            L L   +R +N+ +ESDCL+AI+L++ +       G +VE+I+N     +  S  ++ R 
Sbjct: 1552 LDLVVERRLRNIMVESDCLEAIHLLNSKERCLAPEGGLVEDIQNTMALVNISSIYHVRRE 1611

Query: 318  CNIVADAIAKWVKNERKNDVWIHFFPEWLNELVCNDR 355
             N  A AIAK+V       VW+   P+WL  L+C+D+
Sbjct: 1612 GNTAAHAIAKFVARNNGRYVWLEDGPDWLMSLICHDK 1648

[Close]

BLAST of Spg012512 vs. ExPASy TrEMBL
Match: A0A2P6P4A4 (Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0187741 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-06
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 268 NMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAK 327
           ++ +E+DCL+A+ L+   GE   E+G +VEE+R+  L        ++ R  N VA +IAK
Sbjct: 226 SLMVETDCLEAVRLVFEPGECLAEVGVLVEEVRSLLLVSPAPRIEFVPREANQVAHSIAK 285

Query: 328 WVKNERKNDVWIHFFPEWLNELVCND 354
           +V  E     W    P WL +++ ND
Sbjct: 286 FVAREVGRFKWFEVGPPWLMKVISND 311

[Close]

BLAST of Spg012512 vs. ExPASy TrEMBL
Match: A0A2P6SH84 (Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0354891 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 268 NMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAK 327
           ++ +E+DCL+A+ L+   GE   E+G +VEE+R+  L        ++ R  N VA +IA 
Sbjct: 179 SLMVETDCLEAVRLVVEPGECLAEVGVLVEEVRSLLLVSPAPRIEFVPREANQVAHSIAN 238

Query: 328 WVKNERKNDVWIHFFPEWLNELVCND 354
           +V  E     W    P WL +++ ND
Sbjct: 239 FVAREVGRFKWFEVGPPWLMKVISND 264

[Close]

BLAST of Spg012512 vs. ExPASy TrEMBL
Match: A0A6J1GIQ2 (uncharacterized protein LOC111454550 OS=Cucurbita moschata OX=3662 GN=LOC111454550 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-05
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 176 LSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDE 233
           +SAQ LKK IE+NE+L +ENS L +Q KKMK IA+RGK  ++  KEAE R R+L +E
Sbjct: 2   MSAQGLKKAIERNERLSKENSRLEDQLKKMKVIASRGKMAIHGVKEAEDRARKLNNE 58

[Close]

BLAST of Spg012512 vs. TAIR 10
Match: AT1G14680.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09060.1); Has 8132 Blast hits to 6366 proteins in 685 species: Archae - 171; Bacteria - 671; Metazoa - 4046; Fungi - 445; Plants - 318; Viruses - 23; Other Eukaryotes - 2458 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 169 LVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKK-----------MKAIANRGKSVVN 228
           LV++EA ++AQSLKK +E+N++L  E   LV QCKK            +++   G     
Sbjct: 62  LVRSEASMNAQSLKKFVEENQKLGSEREDLVNQCKKWEKECFLYHQDRESLMEFGNETDE 121

Query: 229 RAKEAEARVRELEDERPSSKLASFTGRELEDERRCDMESWL 259
           RA+EAE+RVRELE+E    K++      +E E  C ++S L
Sbjct: 122 RAREAESRVRELEEE--VRKMSDEIKSRIESEEDCLVDSIL 160

[Close]

BLAST of Spg012512 vs. TAIR 10
Match: AT4G09060.1 (unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1); Has 8168 Blast hits to 6036 proteins in 601 species: Archae - 151; Bacteria - 570; Metazoa - 4684; Fungi - 544; Plants - 345; Viruses - 91; Other Eukaryotes - 1783 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-07
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 165 HYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMK-----------AIANRGK 224
           H +  V++EA ++AQ+LKK +E+N++L  E   L+ QCKK++           A+   G 
Sbjct: 74  HVIDRVRSEASMNAQALKKFVEENQKLASECGNLLSQCKKLEKECLLYHQDRDALMEFGN 133

Query: 225 SVVNRAKEAEARVRELEDE--RPSSKLASF 242
               RA+EAEARVRELEDE  R S ++  F
Sbjct: 134 ESDERAREAEARVRELEDEIGRMSEEMQRF 163

[Close]

BLAST of Spg012512 vs. TAIR 10
Match: AT4G09060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1). )

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-07
Identity = 50/156 (32.05%), Postives = 82/156 (52.56%), Query Frame = 0


Query: 165 HYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMK-----------AIANRGK 224
           H +  V++EA ++AQ+LKK +E+N++L  E   L+ QCKK++           A+   G 
Sbjct: 74  HVIDRVRSEASMNAQALKKFVEENQKLASECGNLLSQCKKLEKECLLYHQDRDALMEFGN 133

Query: 225 SVVNRAKEAEARVRELEDE--RPSSKLASF-----TGRELEDERRCDMESWLTL------ 284
               RA+EAEARVRELEDE  R S ++  F      G +LE   R ++   + L      
Sbjct: 134 ESDERAREAEARVRELEDEIGRMSEEMQRFKRQIGDGEKLERSVRVNISKKMYLLAATYN 193

Query: 285 HWN--QRCKNMKMESDCLQAI--NLMSREGEVKNEM 293
           H+N  + C    +E D L ++  +L+S++  +   +
Sbjct: 194 HFNIVENC-TTPLEEDLLDSVLGSLISKDETIMGRL 228

[Close]

BLAST of Spg012512 vs. TAIR 10
Match: AT2G13980.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 5.4e-04
Identity = 34/112 (30.36%), Postives = 51/112 (45.54%), Query Frame = 0


Query: 242 TGRELEDERRCDMESWLTLHWNQRCKNMKMESDCLQAINLMSREGEVKNEMGTVVEEIRN 301
           T   LE E +  + + L   W +    + ME DC    NL+S      N +  ++++IR 
Sbjct: 60  TSTPLEAETKALLAA-LQQTWIRGYLRVIMEGDCETLTNLVSGSSS-HNHLANLLDDIRI 119

Query: 302 RALFFSEISFSYISRNCNIVADAIAKWVKNERKNDVWIHFFPEWLNELVCND 354
            A  FS + FS++ R  N VA  +AK   N           P WL++  CND
Sbjct: 120 WAKKFSNVQFSFVRRGGNKVAHELAKLGCNSTCFYSDSCTLPIWLHQHYCND 169

The following BLAST results are available for this feature:

BLAST of Spg012512 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885825.1	1.1e-11	69.70	uncharacterized protein LOC120076121 [Benincasa hispida]	[more]
XP_022131622.1	4.0e-09	63.38	uncharacterized protein LOC111004753 [Momordica charantia]	[more]
KAG7020228.1	1.3e-07	51.19	hypothetical protein SDJN02_16911, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6585310.1	1.3e-07	51.19	hypothetical protein SDJN03_18043, partial [Cucurbita argyrosperma subsp. sorori...	[more]
AFP55557.1	3.8e-07	35.05	non-ltr retroelement reverse transcriptase [Rosa rugosa]	[more]

BLAST of Spg012512 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg012512 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRI9	2.0e-09	63.38	uncharacterized protein LOC111004753 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
J7G0Q7	1.8e-07	35.05	Non-ltr retroelement reverse transcriptase OS=Rosa rugosa OX=74645 PE=4 SV=1	[more]
A0A2P6P4A4	4.5e-06	34.88	Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=7464...	[more]
A0A2P6SH84	1.7e-05	33.72	Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=7464...	[more]
A0A6J1GIQ2	2.9e-05	57.89	uncharacterized protein LOC111454550 OS=Cucurbita moschata OX=3662 GN=LOC1114545...	[more]

BLAST of Spg012512 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14680.1	1.4e-07	38.61	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G09060.1	1.8e-07	41.11	unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thal...	[more]
AT4G09060.2	1.8e-07	32.05	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G13980.1	5.4e-04	30.36	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 174..208
None	No IPR available	COILS	Coil	Coil	coord: 212..239
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 258..328 e-value: 1.4E-9 score: 37.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 254..337 e-value: 3.9E-5 score: 25.6
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 262..327 e-value: 8.7388E-12 score: 59.6352

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012512.1	Spg012512.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity