Spg012315 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012315
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold1: 14868476 .. 14873841 (+)
RNA-Seq Expression	Spg012315
Synteny	Spg012315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTGCACGAGGGCAATTATGTCCCTTCGAAGGTCGACACTACTACATCCTCGATCCTAATCCTAAAGGTAAAGCCCGGGTATAGAGCTGTGGTTGTGTGTGATATGTATGACAATATAATATGAATTAACAATGTATTCATTAAAGCACAAAATATATAGGATCGAGGATGACCCTCCTCGATCCTATGCAACAATAACTATGCAACAATAACTATGCAGAAAATAAGATGGACCACATAATAAATTAATAAATAACAAAATGAATCGAATAATTAAAAAAAATGAAAACGGCATTGACCCTCCTAAGAAAAGTCCCCAGCGGAGTCGCCACCAATCATCTTGGGGTGTGATTGGTCACCCGTTTTTTAAAAAAATTAACTGGTCTTAGAAACCAAATTGGGTTCGGGGGTCAGTTGTGTGTAGGGAAGGTATTAGCACCCTACAACACCCGTTTGAAAACATTCTATTTTATTACTCGAATTCATTAAACAAAGGTCCAAAAAATAACAAATAAAACTTGGAAAAAATGAAAATTAAAAATTAAATGTCTCACTAATTTCACCTTATCTTTAAATAAAGTAAGGATTTAATTTTGTGAGTGGGGTTAACCCATGACTTTATTATCATGTAGAAATTTTCTAATTAAGGAAAATATTTCACCTCAAGAATTTGAAAATTATTTCACTCCGTCATAGGCTTTACATGAATTATTTTGTCTCTTATTAATTCACATTTTAACGACAGAAATGTAAATTAACAACTTATAAAATCATTCAAAATCATGATTTAATACTTTGAAGCATTTTGAAATTTTAATTTAAAATTAAGACAAAAATTGACATCCAATTCAAATTTTCAAGTTAAACTCAATTAAGCATTATAAATCAAAATTCACTCTTGAAAGACAATTGAAATTCAAACTAAAATTCCAAACCAAAGTAAATTGAAATTAATCTCAAAACAAAACCTTAGGCTATTTTCCTTAAATACCCTCTTAAACAAGTTCCTCATGAACGTGAAATCCACAAGTCCATAAATTTTGACCAATCACAAATTGTCACGTCATTCCACGAAATTGATGACGAGATTATAATTAATTAAATTTGGGACCAATTATAAATTGACATGTGTCCCAAATTTAATTTGAAGACAAAGTTGGCCATTTAATTTGATCAATTAATCAAAATTAAATTGTTTTGATCAAATTAATTAATTTGACCAATTAATTAAAAATAATAATAATTAATTGGATCAAATTTGGGCCTTTTAAATATTTGGGTCATATGGTTTTGGGTCAAATAAACAAAACCCAAGACTAAATAGTTGAGTCCAAGACCAATAAAGCCCAAGTCCAAGTTGTTAGGCCCAAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCCATTTGTAGGGGGAGAATTTTGAAGCTCGAAGCCAGAGTCAGAGAATTCAGAGAACTTCATCAAGATTGAAGACTGAAGACTGAAGACTCCCTGAAATCCACAAGTTTCAAAGTGTTGAACATTTCCTGAAGACTGAAGACTCCTTCAAGATTTGGAAGACTTCAAGCTCCAAGAATCCGTTGAAGCTCCAGACTCGAGATCAAGCGTTCCAGCCCTCGAGTGAAACACATCCACACACAAGAGAGAGAATCAGAGGATCAACATTAGAGATTGTATATCCACACGCATACAAATATTAATACAAGTATATCGTTTATTCCACTTGTCTCCATCTCCGAGGTTACGTGTGAACAAATTGGCACGCCCAGTGGGACCATCTCTACCTCTCATCTCTTTCTCTTGTTAAAAGATCCAACCAACGTGATGGCACCAAAGAAAGCTCCCGTGAAGCTTACAACATCAAGCGACTCTTACACTGGTCCTATCACTCGTAGTCGTTCCCAAGGAATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCAAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAGTCTAGCCAGACCCCTGCTGCAGGAAAGAATGATAAAGGGAAGGCTGTCGTGCATGAGGATCAACCGCAACACTCCGTGTCAGTTGCTTCTTTGTCTGTCCAACAACTGCAGGACATGATCATGAATTCCATCAGGGCTCAGTATGGTGGACCCACTCAAAGTTCCCTCTTGTATTCTAAACCTTATACAAAGAGGATTGACAATCTCAGACTACCCACTGGGTTTCAGCCTCCCAAATTCCAGCAGTTTGACGGAAAGGGCAACCCAAAGCAACACATCGCCCACTTTGTTGAAACCTGTGAGAACGCCGGTACTCGGGGAGATTTGCTTGTTAAGCAATTTGTCCGAACACTGAAGGGAAACGCGTTCGATTGGTACACTGACCTGGAGCCTGATACAATTGACAGCTGGGAACAGATGGAGAGAGAGTTTCTGAATCGCTTCTACAGTACGAGGCGAACAGTTAGTATGACAGAACTCACAAGCACAAAGCAGCGAAAGGGTGAGCCAGTCATTGATTACATCAATCGTTGGAGAGCCTTGAGTCTTGACTGTAAAGATAGACTCTCCGAGGTGTCCTCTGTTGAAATGTGCACCCAAGGTATGCACTGGGGACTTCTTTACATCTTGCAGGGGATAAAACCCCGGACCTTTGAAGAATTGGCGACTCGCGCTCATGATATGGAGTTGAGCATCGCTAGTAGAGGGGGCAAAGATCCCGTAGTCCCAGACATGAGGAAAGAAAAGAAGGAAGTCAAGGGCACTGAGAAAGTTGCAAAGAGTGCCACGAAAGAATCCATGGTCGTTAACACGACCCCGTTGAAATTTTCCTCCAAAGGAAAAGAAAGTAAATCCAGTAAGCAAATAGAGACAGGCGAGAGACGTCGCCTAACTTTAAAAGAAAGACAAGAAAAGGTATATCCATTTCCAGACTCCGACGTTCCAGATATGTTGGAACAGCTGTTGGAGAAGCAGCTGATTGAACTACCTGAATGCAAACGACCGGAAGAGTTAGGAAAAGTCAATGATCCTAACTACTGCAAGTATCACCGAGTTGTTAGTCATCCAGTGGAAAAATGTTTTGTATTGAAAGAGCTAATCCTTAAGTTGGCTCGTGAAAGGAAAATTGAGTTGGACCTTGATGAGGTGGCTCAAACAAATCATGCAACCATAATGGCAAATGTAGGGAATGAAAATCCCCTAATCTCCTCATGTGATTATGAAGAAAGATTAATTCAATTTGGGACCCTTGATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGGCCCCAAGGAAAATATAATTCCGTTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGCCGCAAAAAGCAAAAGCAAAGTTACGCACAGAAAGAGTCCCGCCTATATCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCCAGGAGGTCAAAGCCTGTCGTGGAGGAAGATGATGACGTCCTCGCTAGCTCCTCGGGAGTGGCGGCAGGTTCTGGAGACTTATCCTTTTTCAGCATAAAGGACTTACTGTCACTTCCTCAGGAAGCTAAAAACGTCCTCATTAACGCATTGATAGAGTCCGATGGTACAAAGATTCCAACCTCTGAGGCACACACATGTGCTTCGTGTTGCGTGACTATAGGGTTTTCCGATGAAGATTTGCTGCTAGGGTCAAAACCTCACAATAGACCTTTATTCGTCTCGGGATACATCCGAGAACAGAGGGTAAGTCGGATCCTCATCGACGATGGATCAGCTGTCAATATAATGTCTAAGTCAACCATGAAGCAATTAGGCATCTCGATGGAAGAATTATCAAACAGTAAATTGGTGATTCAAGGTTTCAATCAAGGCGGACAGCGAGCGATTGGCATGATACGTCTCGAGCTCATCATCGGAGATTTGAAGGCCGATACTTTGTTTCATGTGATAGACTCCAAGACCACTTATAAGTTGCTATTAGGTCGTCCTTGGATCCACGGCAATGGAGTGATAACTTCTACATTGCACCAGTGTTTCAAATTCTATCAAGATGGCATTAAGAAAGTTGAAGCTGACACTAACCCATTTTCAGAAGCTGAATCCCATTTCGCTGATGCAAAATTTTATATGAAGAGCGACAACACAGGGGAAACTATACCTACAGAAATCCCCTTGATAAAAAAGAATGATAAACTCGATTTAGAGCCACAAGCAGATGCAGGGAAGGAAGTTGTTGAGAATGTGAAGGCATCTAACCCGAAGAATGGTGGGGCATCTACAAGCCTTGAGAAATCTAAAGTTGTAGAGGATGAGAGGTGTTCACCTGTTCTACGATACATCCCTTTATCCCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCGAAAAGCATAAAGGTCGGTGACGTTGAAATTCTGAAGGAAGGTTTCACTATGCCTCTTACAAAGATCACAGAGCAAGAGATTAGGAAACCTGAGGATGATCAGATAAAAGCAATTTTGCCTGAAAAACGAACTAAAGACGGGTTCGACCCGAAGGCATACAAACTTCTAGCGAAAGCAGGTTATGACTTCACAGCTCACACTGAGTTTAAAAGTCTGAGGGTTTTTGATGGAAGATCTGAGCTCTCTGCAACACAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAGTCGCCTGAACCAGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGCAAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGA

mRNA sequence

ATGCGCCTGCACGAGGGCAATTATGTCCCTTCGAAGGTCGACACTACTACATCCTCGATCCTAATCCTAAAGGTAAAGCCCGGGTATAGAGCTGTGGTTGGGGAGAATTTTGAAGCTCGAAGCCAGAGAATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCAAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAATTAATTCAATTTGGGACCCTTGATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGGCCCCAAGGAAAATATAATTCCGTTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGCCGCAAAAAGCAAAAGCAAAGTTACGCACAGAAAGAGTCCCGCCTATATCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCCAGGAGGTCAAAGCCTGTCGTGGAGGAAGATGATGACGTCCTCGCTAGCTCCTCGGGAGTGGCGGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGA

Coding sequence (CDS)

ATGCGCCTGCACGAGGGCAATTATGTCCCTTCGAAGGTCGACACTACTACATCCTCGATCCTAATCCTAAAGGTAAAGCCCGGGTATAGAGCTGTGGTTGGGGAGAATTTTGAAGCTCGAAGCCAGAGAATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCAAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAATTAATTCAATTTGGGACCCTTGATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGGCCCCAAGGAAAATATAATTCCGTTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGCCGCAAAAAGCAAAAGCAAAGTTACGCACAGAAAGAGTCCCGCCTATATCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCCAGGAGGTCAAAGCCTGTCGTGGAGGAAGATGATGACGTCCTCGCTAGCTCCTCGGGAGTGGCGGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGA

Protein sequence

MRLHEGNYVPSKVDTTTSSILILKVKPGYRAVVGENFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKRKVKSQRKKGKKKSRRSKPVVEEDDDVLASSSGVAAGNYSHQSDWSRQVVKSLQVKLMTTVVTTPVGNYSHQSDWSRQVVKSLQVKLMTTVVTTPAGNYSHQSDWSRQVVKSLQSEADDDRGDHPCRKLQSSK

Homology

[Close]

BLAST of Spg012315 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-13
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 54  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAE 113
           A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAE
Sbjct: 38  AIAQSILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAE 97

Query: 114 MERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ 150
           MERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Sbjct: 98  MERKINLLMKVVDERDHEIAALKEQMQTRETAESSQ 133

[Close]

BLAST of Spg012315 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 9.4e-08
Identity = 44/123 (35.77%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 115 ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGP 174
           E+++ L ++ V + +  E+  +     SR + E    L+QFGT +P+VV+F +E +   P
Sbjct: 503 EKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDP 562

Query: 175 QGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKRKVKSQRKKGKKKSRRSKPVV 233
           QG+   +E+++EGW +V  RKK++    Q+ESR Y++ +R  K+Q+ K KKK+ + K V 
Sbjct: 563 QGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVH 622

HSP 2 Score: 88.6 bits (218), Expect = 1.1e-13
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 54  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAE 113
           A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAE
Sbjct: 38  AIAQSILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAE 97

Query: 114 MERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ 150
           MERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Sbjct: 98  MERKINLLMKVVDERDHEIAALKEQMQTRETAESSQ 133

[Close]

BLAST of Spg012315 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 9.4e-08
Identity = 44/123 (35.77%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 115 ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGP 174
           E+++ L ++ V + +  E+  +     SR + E    L+QFGT +P+VV+F +E +   P
Sbjct: 503 EKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDP 562

Query: 175 QGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKRKVKSQRKKGKKKSRRSKPVV 233
           QG+   +E+++EGW +V  RKK++    Q+ESR Y++ +R  K+Q+ K KKK+ + K V 
Sbjct: 563 QGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVH 622

HSP 2 Score: 88.6 bits (218), Expect = 1.1e-13
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 54  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAE 113
           A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAE
Sbjct: 38  AIAQSILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAE 97

Query: 114 MERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ 150
           MERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Sbjct: 98  MERKINLLMKVVDERDHEIAALKEQMQTRETAESSQ 133

[Close]

BLAST of Spg012315 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-13
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 54  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAE 113
           A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAE
Sbjct: 38  AIAQSILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAE 97

Query: 114 MERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ 150
           MERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Sbjct: 98  MERKINLLMKVVDERDHEIAALKEQMQTRETAESSQ 133

[Close]

BLAST of Spg012315 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 9.4e-08
Identity = 44/123 (35.77%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 115 ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGP 174
           E+++ L ++ V + +  E+  +     SR + E    L+QFGT +P+VV+F +E +   P
Sbjct: 503 EKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDP 562

Query: 175 QGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKRKVKSQRKKGKKKSRRSKPVV 233
           QG+   +E+++EGW +V  RKK++    Q+ESR Y++ +R  K+Q+ K KKK+ + K V 
Sbjct: 563 QGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVH 622

HSP 2 Score: 88.6 bits (218), Expect = 1.1e-13
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 54  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAE 113
           A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAE
Sbjct: 38  AIAQSILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAE 97

Query: 114 MERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ 150
           MERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Sbjct: 98  MERKINLLMKVVDERDHEIAALKEQMQTRETAESSQ 133

[Close]

BLAST of Spg012315 vs. ExPASy TrEMBL
Match: A0A5A7UG56 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00780 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.5e-14
Identity = 68/186 (36.56%), Postives = 102/186 (54.84%), Query Frame = 0


Query: 4   HEGNYVPSKVDTTTSSILI---LKVKPGYRAVVGENF-------EARSQRIEIKEDHTPL 63
           H G+ + SK  T+ +   I    K++P ++    +N        +ARS+ I I+E     
Sbjct: 59  HRGSKLSSKSSTSRTPSKIEASSKIQPFFQDSNFKNITCFASSNQARSKGI-IQEQDQGS 118

Query: 64  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAE 123
            VA  I K + ES K  + +K+NPL+++    S + K   +PDVMSV+MAD+  +  M E
Sbjct: 119 NVAQSILKQLIESPKAGIVIKENPLYDNSDSASSKSKKEAHPDVMSVVMADITAEAAMVE 178

Query: 124 MERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQFGTLDPVVVRFQK-EATMRGPQGK 179
           MERK+N LMKAV+ERD EI  L+ Q+++RE  E  Q     PVV    K +  ++  Q +
Sbjct: 179 MERKINFLMKAVEERDHEITALREQMRTRETIESSQ----TPVVKATDKGKNVVQENQPQ 238

[Close]

BLAST of Spg012315 vs. ExPASy TrEMBL
Match: A0A5D3BY32 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00100 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-13
Identity = 50/113 (44.25%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 36  NFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTS-KQPKDTLN 95
           N  +RS+ I+  ED  P  VA  I + I +  KD + +K+NP  +     S +  ++   
Sbjct: 19  NTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKDGIIIKENPAIDEHNSLSDRSNEEAPQ 78

Query: 96  PDVMSVMMADVD-QDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAE 147
           P++MSVM+ DVD  ++RMAE+E+K+N+LMKAV+ERD EIA LKN ++SR+ AE
Sbjct: 79  PNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNHIKSRDAAE 131

[Close]

BLAST of Spg012315 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-13
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 31  AVVGENFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPK 90
           A  G    +RS+ I  ++D     VA  I K + ES K  + +K+NPL+++   +S + K
Sbjct: 16  AYTGPITRSRSKGITQEQDQGS-NVAQSILKQLMESLKAGIVIKENPLYDNSDSSSSKSK 75

Query: 91  DTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ 150
              +PDVMSVMMAD+  +  MAEMERK+N LMKAV+ERD EI  L+ Q+++RE AE  Q
Sbjct: 76  KETHPDVMSVMMADITPEAAMAEMERKINFLMKAVEERDHEIIALREQMRTRETAESSQ 133

[Close]

BLAST of Spg012315 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 161 QKEATMRGPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKRKVKSQRKKGKK 220
           ++E T    Q K   +E+++EGWT+V RRKK+K +  QKESRLY + +R  K+Q+ K KK
Sbjct: 459 EEEVTPEDSQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKK 518

Query: 221 KSRRSKPVVEEDDD 235
           K+R+ K V E+D D
Sbjct: 519 KTRKLKLVHEKDKD 532

HSP 2 Score: 85.9 bits (211), Expect = 3.6e-13
Identity = 49/113 (43.36%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 36  NFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTL-N 95
           N  +RS+ I+  ED  P  VA  I + I +  K  + +K+NP  +    +SK   + + +
Sbjct: 19  NTHSRSREIQSFEDTPPFEVAKNIWEQISKPPKSGIVIKENPAIDEHYSSSKPSSEEMPH 78

Query: 96  PDVMSVMMADVDQDE-RMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAE 147
           P++MSVM+ +VD  E RMAE+E+K+N+LMK V+ERD EIA+LKN ++SR+ AE
Sbjct: 79  PNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDTAE 131

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BLAST of Spg012315 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.7e-13
Identity = 49/113 (43.36%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 36  NFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTL-N 95
           N  +RS+ I+  ED  P  VA  I + I +  K  + +K+NP  +     S++  + +  
Sbjct: 19  NTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENPAMDEHNSLSERSNEEVPQ 78

Query: 96  PDVMSVMMADVD-QDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAE 147
           P++MSVM+ DVD  ++RMAE+E+K+N+LMKAV+ERD EIA LKN ++SR+ AE
Sbjct: 79  PNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNHIESRDAAE 131

The following BLAST results are available for this feature:

BLAST of Spg012315 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739134.1	1.1e-13	54.17	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031739134.1	9.4e-08	35.77	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	9.4e-08	35.77	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031735972.1	1.1e-13	54.17	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031735972.1	9.4e-08	35.77	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]

BLAST of Spg012315 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg012315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UG56	9.5e-14	36.56	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BY32	2.1e-13	44.25	Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa...	[more]
A0A5D3BY54	2.1e-13	45.38	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BY54	1.0e-04	47.30	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TZU9	4.7e-13	43.36	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]

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BLAST of Spg012315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 321..341
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 304..320
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 304..341

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012315.1	Spg012315.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process