Spg012242 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012242
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	30S ribosomal protein S31, chloroplastic
Location	scaffold1: 15370475 .. 15373012 (-)
RNA-Seq Expression	Spg012242
Synteny	Spg012242

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATTTTTCAATTTGTGCATACAACCCAAAAGAATAATCGAAATCTCGAGTATGGGTTTTTCAACTTGTGCCCAAATTCTAATGGGCTGCATAGTGGGCCGTAAGCCGTGAAATCCAAACAAGCCCACTTTACAGATGCTTGCTTCCTTTCCTTCCGTCTTCTTAAACGACATGTCGTTCATAAAGAGCGCCAATCTTTACCTTGTCGGAGCTCCGAAAACCCGACCGGGTCAACTATAAAAGCAGGATCATATCCGTCACATTCTCCACTCGAAACTTATCTTGGTGATTCTCTGCTTCATCTTCATCCATCCATGGCTTCACTTCCTTTCGGACTTCTTCAGGCCGCATCTCAATCTCCAACTCTTTCTCCTTGTTTTTTCTCTTTCTCCAAATCCGAAACCCTAGGAAAATCTCTGCATTCTTCTACTGCTTCTCTTGCAATCTCTGGAACTTCATCGCCTTCTTCAATTCCCGCTGGTATGCATTTGTTAGCTTGTTTTCAACTGTTCACGTCTCTTCTGTACACATTCGATTGCTTAATTTTTGCTTTTTCAGTGTATTGTGGCCGAGGCGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCACTCATACGGAAATGTATGTAGTTCTCTCTTCTCTCTTCGTTTTGTTCGTTTTCTTATCTGATTGCGAGTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTTGGATGAGTTATCTTTCGTTTTTTATTTTGAATTTTTTGGGGGGAAAATGTACAGGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACTCCAAGAGTACCAACTCCTTCTCCGCCTAGGAAGGATAAATTTGATGACGATGAGAAAATTAAGATCGAGATTGACGAGTCTCTTTTCTCTAGTTAGTCATGGAGCAACATAATTCTGTTTATTTGAATGTGTTTTCTAAATCCAGAAGGTACTTCCACTTCTTATATTCGCATTATTTTTGTATGAATTCTTCAGTCGCTCATTGGCTTCTCGAATCTGTTGATCATTTTCAGTCTACTGGAAGTATGCTCTCTCTGTCTCTTGCTTTTTAACCATTTCTGAGCTAGACTTGACTATTGGTGCTTCATAGATAATATTTGCGTCATTAGCAGGCGTTTGTTTCAAAGGAGGAATTTAAGTTAACTTCCCCCATGTTATCTAAGGCTAGAGTTGAGCTATTTAAGATTAACGTTAGATACAAAAAGAATTTATTAGCTCCTTTTTGGTTTTACCAATTTCTTTCCAATTGTCTTAGGTTGGCTTGGCTTTATAGGGGATCGTCCATTGCTTGTTTATCTACTAAGTTCTGAGCCGAGATTGGGAGGACTTATCCAATATTCTCTCTGTAATAGACTAACAGAGACTACTTATATTATTGCACTTCATGATTATAAAACTATAATCAAAAAGTAGATACGACCTTGGATAGGCTGTTTCCTATGACAAATAAATGGTATAGTAGAGTAGATCTCTTTGCCGGCTTTTACAAATAATATATTTCTTTAACTCAATTTCAGCCGTCTCTGTTGCCTTTTATGTGTGTTTTGGAGGTTCTACTGTCTCTCTATAAAGAGAAAATGTCTCCTGATTCATTGAATAATCGGTATCTACCAAAGCCTTTCAGATAACCATGTCAATACCAGAGATAACCGAAGAAGAAGAAGAAGAAGAAAAGATACCTAGGTTTATTGAAGACCAAAACGAAAGAATCCGACAAATACTGAAGTACCAGAAATCTGCGTATTCTTCTTCTTCTTCTTCATCTTCATCATCTTTTTCCTCTGCATCATCTTTAAGGAGCAGTAGTTTACTAGACTTGATGAAAGCAGGAAACACTTCTCTCAGGAGATTATTTGACATGCAGCATACTAGTTTGGCCACCTATTTCGATAAGTACAGTGGATCACCTATAATAAAGCCTATACCATTGTGGGGCAGTGATTCTGATGTTGAAATCTGCGATGCTTGGGCATCCATCAAGGTCGGACTCTCGCATGATTCTGGGTCTCGCCGAACTAATTGCCCATCAAACGGTAGCTTCATGGACAGAAAGATAGGGTTTCAGGATAGCACAATAAGGGATAGCAAGCACAAGTTAACTAGGAAAAAGTCATTTCGGAAGCTGCCTAGATTTGGTCTGTTATGGAGTAGTGGGAGATTTAGAGTCAGGTTCAGGTTCAGGTTGAGACGACTTAGGATAATGATTTGTGGTAAAATTTTCTAATGTGGCCGTAGTGGAGCTCTGTTTTCCTATCTAGTCTTTGAAGTACAAGGAATTTTTGCTATGGCTTTCTTCAGTACGCTGGTGTTGGCTAATCTCCTTAGTATACTGATTAATCTTGAGATCTGCCCATGAAATATTATTGTGAATTCTACAATGGAGACAGTTCAATTCGGCCGATCAAGGTATTTCAATGAAGAGAGGTAACACTTGAAATCTGATATAACTCCTTAGTTCAGTCTCTAGGTGATCCAGCCGATCCTAAATCAGTTAAAATCTGATCAACAAATC

mRNA sequence

ATGGCTTCACTTCCTTTCGGACTTCTTCAGGCCGCATCTCAATCTCCAACTCTTTCTCCTTGTTTTTTCTCTTTCTCCAAATCCGAAACCCTAGGAAAATCTCTGCATTCTTCTACTGCTTCTCTTGCAATCTCTGGAACTTCATCGCCTTCTTCAATTCCCGCTGTGTATTGTGGCCGAGGCGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCACTCATACGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACTCCAAGAGTACCAACTCCTTCTCCGCCTAGGAAGGATAAATTTGATGACGATGAGAAAATTAAGATCGAGATTGACGAGTCTCTTTTCTCTAGTTAG

Coding sequence (CDS)

ATGGCTTCACTTCCTTTCGGACTTCTTCAGGCCGCATCTCAATCTCCAACTCTTTCTCCTTGTTTTTTCTCTTTCTCCAAATCCGAAACCCTAGGAAAATCTCTGCATTCTTCTACTGCTTCTCTTGCAATCTCTGGAACTTCATCGCCTTCTTCAATTCCCGCTGTGTATTGTGGCCGAGGCGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCACTCATACGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACTCCAAGAGTACCAACTCCTTCTCCGCCTAGGAAGGATAAATTTGATGACGATGAGAAAATTAAGATCGAGATTGACGAGTCTCTTTTCTCTAGTTAG

Protein sequence

MASLPFGLLQAASQSPTLSPCFFSFSKSETLGKSLHSSTASLAISGTSSPSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPSPPRKDKFDDDEKIKIEIDESLFSS

Homology

[Close]

BLAST of Spg012242 vs. NCBI nr
Match: XP_022151467.1 (30S ribosomal protein S31, chloroplastic [Momordica charantia])

HSP 1 Score: 204.5 bits (519), Expect = 5.0e-49
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPCFFSFSKSETLGKSLHSSTASLAISGTSSPSSIPAVYCGR 60
           MASLPFGLLQAASQSPTLSP FFSFSKSETLG SL +STASLA S TSSPSS+PAVYCGR
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 111

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPT-PSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPT P+PPRKDKF+DDEKIKIEID+SLF+
Sbjct: 112 GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLFA 171

[Close]

BLAST of Spg012242 vs. NCBI nr
Match: XP_038882305.1 (30S ribosomal protein S31, chloroplastic [Benincasa hispida])

HSP 1 Score: 198.4 bits (503), Expect = 3.6e-47
Identity = 110/122 (90.16%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPCFFSFSKSETLGKSLH-SSTASLAISGTSSPSSIPAVYCG 60
           MASLPFGLLQAASQSPTLSP FFSFSKSETLG SL  SSTASLA S TSSPSSIPAVYCG
Sbjct: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASSTASLATSTTSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPT-PSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTEKGKRFN SYGNARPR+KTKGRGTPRVPT PSPPRKDKF+DDEKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFNRSYGNARPRNKTKGRGTPRVPTPPSPPRKDKFEDDEKIKIEIDESLF 120

[Close]

BLAST of Spg012242 vs. NCBI nr
Match: XP_008449316.1 (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYJ96295.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 8.0e-47
Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPCFFSFSKSETLGKSLH-SSTASLAISGTSSPSSIPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSKSETLG SL  SSTASLAIS  SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPT-PSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPT PSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of Spg012242 vs. NCBI nr
Match: XP_023517799.1 (30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 105/120 (87.50%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPCFFSFSKSETLGKSLHSSTASLAISGTSSPSSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSP  FSFSKSETLG SL +ST    IS TSSPSSIPAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST---GISATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPT-PSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPT PSPPRKDKFDDDEKIKIEIDESLFS
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of Spg012242 vs. NCBI nr
Match: XP_022931892.1 (30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545.1 30S ribosomal protein S31, chloroplastic [Cucurbita maxima] >KAG6595386.1 30S ribosomal protein S31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027394.1 30S ribosomal protein S31, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.7e-44
Identity = 104/120 (86.67%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPCFFSFSKSETLGKSLHSSTASLAISGTSSPSSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSP  FSFSKSETLG SL +ST +   S TSSPSSIPAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGT---SATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPT-PSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPT PSPPRKDKFDDDEKIKIEIDESLFS
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of Spg012242 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-27
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 24  SFSKSETLGKSLHSSTASLAISGTSSPSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDK 83
           S S SET G SL   T   ++S TSS SSIP VYCGRGD+KT KGKRFNHS+GNARPR+K
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLS-TSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 81

Query: 84  TKGRGTPRVPT-PSPPRKDKFDDDEKIKIEIDESLFSS 121
           +KGRG  RVP  P+PPRKDKF++DEKIKI+IDESLFS+
Sbjct: 82  SKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFSN 118

[Close]

BLAST of Spg012242 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 1  MASLPFGLLQAASQSPTLSPCFFSFSKSETL-GKSLHS-STASLAISGTSSPSSIPAVYC 60
          MASL  G    A  S +     FSFS S+++ G SL S  T SL+ S ++SP ++P +YC
Sbjct: 1  MASLLLGTPSMACHSVS-----FSFSHSQSVAGVSLSSPPTLSLSSSVSTSP-ALPLIYC 60

Query: 61 GRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVP 94
          GRGD+KT KGKRFNHS+GNARP++K KGRG P+ P
Sbjct: 61 GRGDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAP 89

[Close]

BLAST of Spg012242 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-04
Identity = 27/42 (64.29%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 55 AVYCGRGDKKTEKGKRFNHSYGNARP-RDKTKGRGTPRVPTP 96
          AV CGRGDKKT++GKRF  SYGNARP R+K   R   RV  P
Sbjct: 29 AVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVP 70

[Close]

BLAST of Spg012242 vs. ExPASy TrEMBL
Match: A0A6J1DDL3 (30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019400 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.4e-49
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPCFFSFSKSETLGKSLHSSTASLAISGTSSPSSIPAVYCGR 60
           MASLPFGLLQAASQSPTLSP FFSFSKSETLG SL +STASLA S TSSPSS+PAVYCGR
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 111

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPT-PSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPT P+PPRKDKF+DDEKIKIEID+SLF+
Sbjct: 112 GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLFA 171

[Close]

BLAST of Spg012242 vs. ExPASy TrEMBL
Match: A0A5A7TU27 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00930 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.9e-47
Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPCFFSFSKSETLGKSLH-SSTASLAISGTSSPSSIPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSKSETLG SL  SSTASLAIS  SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPT-PSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPT PSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of Spg012242 vs. ExPASy TrEMBL
Match: A0A1S3BL51 (30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.9e-47
Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPCFFSFSKSETLGKSLH-SSTASLAISGTSSPSSIPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSKSETLG SL  SSTASLAIS  SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPT-PSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPT PSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of Spg012242 vs. ExPASy TrEMBL
Match: A0A6J1HRX4 (30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466195 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 104/120 (86.67%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPCFFSFSKSETLGKSLHSSTASLAISGTSSPSSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSP  FSFSKSETLG SL +ST +   S TSSPSSIPAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGT---SATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPT-PSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPT PSPPRKDKFDDDEKIKIEIDESLFS
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of Spg012242 vs. ExPASy TrEMBL
Match: A0A6J1EV33 (30S ribosomal protein S31, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438171 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 104/120 (86.67%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPCFFSFSKSETLGKSLHSSTASLAISGTSSPSSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSP  FSFSKSETLG SL +ST +   S TSSPSSIPAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGT---SATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPT-PSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPT PSPPRKDKFDDDEKIKIEIDESLFS
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of Spg012242 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-28
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 24  SFSKSETLGKSLHSSTASLAISGTSSPSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDK 83
           S S SET G SL   T   ++S TSS SSIP VYCGRGD+KT KGKRFNHS+GNARPR+K
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLS-TSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 81

Query: 84  TKGRGTPRVPT-PSPPRKDKFDDDEKIKIEIDESLFSS 121
           +KGRG  RVP  P+PPRKDKF++DEKIKI+IDESLFS+
Sbjct: 82  SKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFSN 118

[Close]

BLAST of Spg012242 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 4.0e-04
Identity = 24/43 (55.81%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 41 SLAISGTSSPSSIPAV----YCGRGDKKTEKGKRFNHSYGNAR 80
          S   S  S   + PAV     CGRGDKKT+KGKRF  SYGN+R
Sbjct: 27 SARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKRFKGSYGNSR 69

The following BLAST results are available for this feature:

BLAST of Spg012242 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151467.1	5.0e-49	90.00	30S ribosomal protein S31, chloroplastic [Momordica charantia]	[more]
XP_038882305.1	3.6e-47	90.16	30S ribosomal protein S31, chloroplastic [Benincasa hispida]	[more]
XP_008449316.1	8.0e-47	88.52	PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1...	[more]
XP_023517799.1	1.3e-44	87.50	30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022931892.1	3.7e-44	86.67	30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545...	[more]

BLAST of Spg012242 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80439	1.5e-27	70.41	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3...	[more]
P47910	2.5e-14	53.68	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]
P47909	1.0e-04	64.29	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of Spg012242 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDL3	2.4e-49	90.00	30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7TU27	3.9e-47	88.52	30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BL51	3.9e-47	88.52	30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228...	[more]
A0A6J1HRX4	1.8e-44	86.67	30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1EV33	1.8e-44	86.67	30S ribosomal protein S31, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Spg012242 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38140.1	1.1e-28	70.41	plastid-specific ribosomal protein 4	[more]
AT2G21290.1	4.0e-04	55.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 59..83 e-value: 1.4E-10 score: 38.9
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 18..101 e-value: 1.5E-29 score: 102.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..88
None	No IPR available	PANTHER	PTHR34550:SF2	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..119
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012242.1	Spg012242.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding