Spg012127 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012127
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Seed maturation protein PM41
Location	scaffold1: 16037382 .. 16037618 (-)
RNA-Seq Expression	Spg012127
Synteny	Spg012127

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAGCTCAGGGAGCGCAGCCGAAGGAGTCCTTCACGGCCACCACTTACGAGTCGGTGCCCGGCGGCGAGAACCGCACCAGGACCGACCTCCGTTCCCGGGAGGACGCCGGCATGATCCAGATCGATAAGCTTCAGGACAAAGTCCAAGAAGCCGCCGGCAAAGGCGGCCCGGTCTTCGGCGCCGGAAAAGATGACAAGAAACAAGACCTTGGAGTTACCGGCACCGGATAA

mRNA sequence

ATGTCAGGAGCTCAGGGAGCGCAGCCGAAGGAGTCCTTCACGGCCACCACTTACGAGTCGGTGCCCGGCGGCGAGAACCGCACCAGGACCGACCTCCGTTCCCGGGAGGACGCCGGCATGATCCAGATCGATAAGCTTCAGGACAAAGTCCAAGAAGCCGCCGGCAAAGGCGGCCCGGTCTTCGGCGCCGGAAAAGATGACAAGAAACAAGACCTTGGAGTTACCGGCACCGGATAA

Coding sequence (CDS)

ATGTCAGGAGCTCAGGGAGCGCAGCCGAAGGAGTCCTTCACGGCCACCACTTACGAGTCGGTGCCCGGCGGCGAGAACCGCACCAGGACCGACCTCCGTTCCCGGGAGGACGCCGGCATGATCCAGATCGATAAGCTTCAGGACAAAGTCCAAGAAGCCGCCGGCAAAGGCGGCCCGGTCTTCGGCGCCGGAAAAGATGACAAGAAACAAGACCTTGGAGTTACCGGCACCGGATAA

Protein sequence

MSGAQGAQPKESFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVQEAAGKGGPVFGAGKDDKKQDLGVTGTG

Homology

[Close]

BLAST of Spg012127 vs. NCBI nr
Match: XP_038883613.1 (uncharacterized protein LOC120074530 [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 5.6e-33
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVQEAAGKGGPV 60
          MSGAQGAQPKESFTATTYESVPGGENRT+TDLRSREDAGMIQIDKLQDKVQ+AAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVPGGENRTKTDLRSREDAGMIQIDKLQDKVQDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of Spg012127 vs. NCBI nr
Match: XP_023544782.1 (uncharacterized protein LOC111804271 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.9 bits (372), Expect = 3.6e-32
Identity = 74/78 (94.87%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVQEAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKV++AAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of Spg012127 vs. NCBI nr
Match: XP_022949816.1 (uncharacterized protein LOC111453100 [Cucurbita moschata])

HSP 1 Score: 147.9 bits (372), Expect = 3.6e-32
Identity = 74/78 (94.87%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVQEAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKV++AAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of Spg012127 vs. NCBI nr
Match: KAG6603554.1 (hypothetical protein SDJN03_04163, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033744.1 hypothetical protein SDJN02_03469, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVQEAAGKGGPV 60
          MSGAQGAQPK SFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKV++AAGKGGPV
Sbjct: 1  MSGAQGAQPKGSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of Spg012127 vs. NCBI nr
Match: XP_022978324.1 (uncharacterized protein LOC111478345 [Cucurbita maxima])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 73/78 (93.59%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVQEAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKV++AAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKD+KKQDLGV+GTG
Sbjct: 61 FGAGKDEKKQDLGVSGTG 78

[Close]

BLAST of Spg012127 vs. ExPASy TrEMBL
Match: A0A6J1GD40 (uncharacterized protein LOC111453100 OS=Cucurbita moschata OX=3662 GN=LOC111453100 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.8e-32
Identity = 74/78 (94.87%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVQEAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKV++AAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of Spg012127 vs. ExPASy TrEMBL
Match: A0A6J1ITS5 (uncharacterized protein LOC111478345 OS=Cucurbita maxima OX=3661 GN=LOC111478345 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.1e-32
Identity = 73/78 (93.59%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVQEAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKV++AAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKD+KKQDLGV+GTG
Sbjct: 61 FGAGKDEKKQDLGVSGTG 78

[Close]

BLAST of Spg012127 vs. ExPASy TrEMBL
Match: A0A0A0KY41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314500 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.7e-32
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVQEAAGKGGPV 60
          MSGAQGAQPKESFTATTYESV GGENRTRTD+RSREDAGMIQIDK+QDKV++AAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKIQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of Spg012127 vs. ExPASy TrEMBL
Match: A0A5D3BF74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold67599G00010 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVQEAAGKGGPV 60
          MSGAQGAQPKESFTATTYESV GGENRTRTD+RSREDAGMIQIDKLQDKV++AAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGK+DKKQDLGVTGTG
Sbjct: 61 FGAGKEDKKQDLGVTGTG 78

[Close]

BLAST of Spg012127 vs. ExPASy TrEMBL
Match: A0A1S3CL14 (uncharacterized protein LOC103502173 OS=Cucumis melo OX=3656 GN=LOC103502173 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVQEAAGKGGPV 60
          MSGAQGAQPKESFTATTYESV GGENRTRTD+RSREDAGMIQIDKLQDKV++AAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGK+DKKQDLGVTGTG
Sbjct: 61 FGAGKEDKKQDLGVTGTG 78

[Close]

BLAST of Spg012127 vs. TAIR 10
Match: AT2G21820.1 (unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-28
Identity = 61/78 (78.21%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVQEAAGKGGPV 60
          MSGAQGA+P +S TATTYESV GG+N+T+ D+RS+ED G IQ+DKLQDKV +AAG GGPV
Sbjct: 1  MSGAQGAEPMDSRTATTYESVEGGQNKTKLDIRSKEDEGGIQVDKLQDKVSDAAGLGGPV 60

Query: 61 FGAGKDDKKQDLGVTGTG 79
          FGAGKDDKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

The following BLAST results are available for this feature:

BLAST of Spg012127 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883613.1	5.6e-33	97.44	uncharacterized protein LOC120074530 [Benincasa hispida]	[more]
XP_023544782.1	3.6e-32	94.87	uncharacterized protein LOC111804271 [Cucurbita pepo subsp. pepo]	[more]
XP_022949816.1	3.6e-32	94.87	uncharacterized protein LOC111453100 [Cucurbita moschata]	[more]
KAG6603554.1	1.1e-31	94.87	hypothetical protein SDJN03_04163, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022978324.1	1.1e-31	93.59	uncharacterized protein LOC111478345 [Cucurbita maxima]	[more]

BLAST of Spg012127 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg012127 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GD40	1.8e-32	94.87	uncharacterized protein LOC111453100 OS=Cucurbita moschata OX=3662 GN=LOC1114531...	[more]
A0A6J1ITS5	5.1e-32	93.59	uncharacterized protein LOC111478345 OS=Cucurbita maxima OX=3661 GN=LOC111478345...	[more]
A0A0A0KY41	6.7e-32	93.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314500 PE=4 SV=1	[more]
A0A5D3BF74	1.1e-31	93.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CL14	1.1e-31	93.59	uncharacterized protein LOC103502173 OS=Cucumis melo OX=3656 GN=LOC103502173 PE=...	[more]

BLAST of Spg012127 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21820.1	1.2e-28	78.21	unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR36012:SF2	OS01G0654400 PROTEIN	coord: 1..78
None	No IPR available	PANTHER	PTHR36012	OS01G0654400 PROTEIN	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012127.1	Spg012127.1	mRNA