Spg012120 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012120
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	proton-dependent oligopeptide transport (POT) family protein
Location	scaffold1: 15309527 .. 15312337 (+)
RNA-Seq Expression	Spg012120
Synteny	Spg012120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGGAGATGATCTACTTCGGCCTTCTTCTCGGTAAGCGTTGATTCCTTCTTTTATCGCCAGCATCTCGAGTGACATACTAAGATTTGAATAAATGACAATGACAATAATTTAACTTATCCCAAAATTGTATTTCTAATATTAAAAAAAGGAAAGAAGAAGAAGAAGGAAAAAAAAAAAAAAAAAAAAAAAAAACTTATCCCAAAATTTTACCTAGCCTACACTATTTGGTTTAAGTTGACCATTATATTGTGATTGCAATTATAATAATTGTTAGGCATGTTTAAAAGAATAGATCTATTTCTCACTTATAACAAATGTTGCGAATTCAATAATTTGTTGATCTAACAGAGGCTAGGGTTCTCTTATCACTATTAACTCCACAAGCTAATGGAATATGCCACGAAAATCGACCAAAATGCATTTCTGACACACAAAGAATCATCTTCTTCGCTTTAGGGTTAATCTCCATAGGAGTCTCAGATCATTTCGCAACAATTCAAAGATTCATGGCGGAGCAAACAAAAAATGAAACAGACAACAGCGTATATTATAGAGTAATGGCGGGTTTTTGTGGTGCTTCCAATGTGACTCATCTTCCTTATATATTTAGCAGGCATTACACTTTTCTACATAAAATCATAGTCCATTCGGTTTGGAATTCCTGCAATTTTTGAATTATTGGCTACCATTTTGTTCTTCAGTGGCGTTGTTTCTTATCATGGTAAGAGGCCAAGAGGTAGCCCGATTACGACGATTTTCAAAGTCTTCATCTCTTCCACTTCTAAAATGTTTCGTTCTTCAACTAGTGGTGATGATGTGCAACTCTATGACAGCTCTCATCCTGATGCTTACAAAATCCCTCGCACTAATGCCCTCGGGTCTCTCTCTCTTGTTGCATTCAACTTTTTTTTCTTTTAAATATTCTCATTTCGGGTCGGAATTCAAGCTTATGACTTCTTAGAAAAGTAAAAATGTCTTAACTATTGAACTATAGATTCCTCTTGAAATTCTAACTTAAAAAACTTACCTAAATACAACTATAAATTTTTTACAAGTAAGAGAAAGGAAGACAAAGAAACTAGGGAAAAATATACTTTTGGTCCCTGAGGTTTAGGTTAAGTTTCATTTTGGTCCCTAAGTTTGAAAACTCGACATTTTGGCCAATGAGGTTTGGATTTTGTTTCATTTTGGTAAATTCATCCAATTTTTCGTTAATTACTAACGGATTGCTGACGTGACACTATTTTTTATTATTTTTTTCATCATTCTCTTCTTCTTCTTCACCACCACCCACCACTGCTGGAACCACTACCGATGTTGGAGTCGGTTGCTTTTTCCATTCCCTTTTTTCTCGCTCCTTTTCCTCCTTTTTTTTCTTCTTCCTCCCTCTCCTCCCTTTTTCTTCTCTTCCTCCCTTTCTTTCACTGTTTTTTATTAAAAATAAAAAGAAAAATAAACCATGAAGGTTTCCCCTTCGAATCCGATTGGAACAAGCCTAGATCTAAGCTTAGTCTAGTCCAAAATCGAAGAAGAATCATTCCAACAGGATAAACATAGGGGAATCGTGGGAGTAGTTTGCCACTTGTTTGTGGGGTTTTTTTTTTTTTTTTTTTTGTGTTCAAAGGTCGTCCGTAAAGAGGCGCGTTGTCGTGGAGTTTGCTGGAGAAAAGGGTCGTTGTAGATCTTTGTGGACGTGTTCACTGGCGACGAGAGACCGCCGTCGTTGGCTCCTCATGAATCGCCAAGAAGAAGAAAGCAAGAGGAAGAAGGTGGTTGGTGGTGCTCACGAGAGGGAGAGAAAATAATTTTTAAAAAAATTGGATGATGGGACCAAAATAAAACAAAATCCAAATCGGTAGATACAAAATTTTGAGTTTTCAAATTTAAGGATCAAAATGAAAACTAACCTAAATCTTAGAGACAAAAATTGTATTTTATATATTATTTAACATTTTTTAAGTTAAGGAATCAAATGTGGGGGAGGTTCAATCTTGCACTAAATTATTATTATTATTATTATTATTTTGAGTACATCAACATTTTGGAGGTGGGAGGATTTGAACCTCTGACCTTATGATCGATGATACATGCCAATTACCGCTGAGCTAAGCTCATTTTGACAATTATTATTATTATTACTATTTTAAAATTCTTGCACTAAATTATCAGTAATGTTTTGACTTATTGAAGAATAAATAAATTAGCTGATACATGCAGTGTGATGGGTTGAGAATTGTGTATATTAAATATAATTAAATTTATTCTAGTTTGATTAAGTACTTTGCATCTTACTAATAGCCAAAATACGGTATTAGATTAGTAGTTCTCACGTTTAGATATGTGTCATCTTTTTTTTTTTTTAAAAAAAAAGAGAGAGTTTAGATGTGAATAAATTATTAATTAGATCTTACAGATCAAATTAAAATGGAAGAGCACGTATAAGAGTGAAAATGAAGTTAAGAAATGTAGTAAATTATTAAAAAAAAAAAAAAAAAGTTTTTTTTTTTTTTTTTTTGTTTTTTATAAAAGAAACTTCATTAATTAAGAACCAACCATACAACCACCCCCATTAAAACTCTTTTGTAAAAAAGAAGACAAAAAAATCCCTCTTCTGGAGTGGAATCGACAAAAAAAAAAAATGGAGCTTGAATCAACCATCTTCTCATGGTTGTAAGCCATACGTGCCAAGAAATGCGTTTCACCGTTGCCTTCCCGCCGACAGAAGGAGAAAGAGACATCGAGGGATTCCCGATTAAGCATTGTGATTGCTTTCGCTGAGTCTGATTCCATTATAATCTGTGGGTAA

mRNA sequence

ATGATCGGAGATGATCTACTTCGGCCTTCTTCTCGTGGCGTTGTTTCTTATCATGGTAAGAGGCCAAGAGGTAGCCCGATTACGACGATTTTCAAAGTCTTCATCTCTTCCACTTCTAAAATGTTTCGTTCTTCAACTAGTGGTGATGATGTGCAACTCTATGACAGCTCTCATCCTGATGCTTACAAAATCCCTCGCACTAATGCCCTCGGGTCTCTCTCTCTTATCTTTGTGGACGTGTTCACTGGCGACGAGAGACCGCCGTCGTTGGCTCCTCATGAATCGCCAAGAAGAAGAAAGCAAGAGGAAGAAGCCATACGTGCCAAGAAATGCGTTTCACCGTTGCCTTCCCGCCGACAGAAGGAGAAAGAGACATCGAGGGATTCCCGATTAAGCATTGTGATTGCTTTCGCTGAGTCTGATTCCATTATAATCTGTGGGTAA

Coding sequence (CDS)

ATGATCGGAGATGATCTACTTCGGCCTTCTTCTCGTGGCGTTGTTTCTTATCATGGTAAGAGGCCAAGAGGTAGCCCGATTACGACGATTTTCAAAGTCTTCATCTCTTCCACTTCTAAAATGTTTCGTTCTTCAACTAGTGGTGATGATGTGCAACTCTATGACAGCTCTCATCCTGATGCTTACAAAATCCCTCGCACTAATGCCCTCGGGTCTCTCTCTCTTATCTTTGTGGACGTGTTCACTGGCGACGAGAGACCGCCGTCGTTGGCTCCTCATGAATCGCCAAGAAGAAGAAAGCAAGAGGAAGAAGCCATACGTGCCAAGAAATGCGTTTCACCGTTGCCTTCCCGCCGACAGAAGGAGAAAGAGACATCGAGGGATTCCCGATTAAGCATTGTGATTGCTTTCGCTGAGTCTGATTCCATTATAATCTGTGGGTAA

Protein sequence

MIGDDLLRPSSRGVVSYHGKRPRGSPITTIFKVFISSTSKMFRSSTSGDDVQLYDSSHPDAYKIPRTNALGSLSLIFVDVFTGDERPPSLAPHESPRRRKQEEEAIRAKKCVSPLPSRRQKEKETSRDSRLSIVIAFAESDSIIICG

Homology

[Close]

BLAST of Spg012120 vs. ExPASy Swiss-Prot
Match: O80436 (Protein NRT1/ PTR FAMILY 5.5 OS=Arabidopsis thaliana OX=3702 GN=NPF5.5 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.3e-04
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 13  GVVSYHGKRPRGSPITTIFKVFISSTSKMFRSSTSGDDVQLYDSSHPDAYKIPRTNAL 71
           G  SY   +P GSP+TT+F+VF++S SKM   + S +  QLY+ +  D    P T++L
Sbjct: 182 GACSYKRVKPGGSPLTTVFRVFMASASKM-SCAYSNNSSQLYEKAECDQDIKPHTSSL 238

[Close]

BLAST of Spg012120 vs. TAIR 10
Match: AT2G38100.1 (proton-dependent oligopeptide transport (POT) family protein )

HSP 1 Score: 45.4 bits (106), Expect = 4.5e-05
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 13  GVVSYHGKRPRGSPITTIFKVFISSTSKMFRSSTSGDDVQLYDSSHPDAYKIPRTNAL 71
           G  SY   +P GSP+TT+F+VF++S SKM   + S +  QLY+ +  D    P T++L
Sbjct: 182 GACSYKRVKPGGSPLTTVFRVFMASASKM-SCAYSNNSSQLYEKAECDQDIKPHTSSL 238

The following BLAST results are available for this feature:

BLAST of Spg012120 vs.


Match Name	E-value	Identity	Description

BLAST of Spg012120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80436	6.3e-04	41.38	Protein NRT1/ PTR FAMILY 5.5 OS=Arabidopsis thaliana OX=3702 GN=NPF5.5 PE=2 SV=1	[more]

BLAST of Spg012120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Spg012120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38100.1	4.5e-05	41.38	proton-dependent oligopeptide transport (POT) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012120.1	Spg012120.1	mRNA