Spg011464 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg011464
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold8: 15670744 .. 15672471 (+)
RNA-Seq Expression	Spg011464
Synteny	Spg011464

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATCGTTGGAGAGAGGAAAAATGAGTGACTACAAGCAAGAGCAACCACCGGCTCCCGTGGTCGTCCCTTCGTATGAAGGTAAAATACTAATACAAATGTTGTTTAGTTTTCGTTCTCTTAACTTTGGTGCATTTTCATGGGTTTGTACTAAAGCTGATGACTCATGGTGTTAATTTTGGCTGTGAACGACCATAACTAAATAGGTCATCCACCAGCAGGATATCCTGTGCAGGGCTGTCCTCCTCCGGCGTTCGGTCAACCTCCACCTCAAAATCACAAACACAAACAACGAGGAGCAGGAGAATGTTGTGGTTCGTGCTTGGGAAGCTTGTAAGTTTCCTCTCTTCTTGTGTTGATTTGGATTTTGAAAATTATATTTGTTTTCTCCTAGTTTACTTATAATGGTTTTCTTTCTTTCTTGTTAAGCACACATTTAAACTTTCAGTTAAATTTCAAAACCAAAAACAAGTTTTTCGAAAATTACTGTCTCGTAAGATAATTTTTTGATTTTTGGTTTTTGAAAATCATGTTTTTTTTTTTCAAATTTTCTTACCATGGTTTTCATCTTTGTTAATGATACATTTGAATTCCTAACCAAATTCTATAAACAAAAACAAGTTTTTGAAAACTACTTTTTAAGCCTCTGTGTGATAACAATTTGGTTTGTTGTTTTTTAAAATGAAGCTTAAAAATACCCACACATAAGTTTCTCGATTTTCTTGTCTATCTAACTTCTTTTTCTATGTTTTCTATGTTTTCAAAAACCAAGTCAAGCTTTGAAAACTAAAAAAAGTAGTTTCCAAAAACTTGTTTTTGTTTTTGGAATTTGCGTAGAAAGTCAAATGTGTCCTTGGACAAAGATGTAAACCATGATAAGAAAAATGTACTTTACCATTTGTTTGATAATTAATATTTATTTTATATTAATTCAAAAAATATTTATCTTGTATAATATTTTATATTTTAAAATTTTATCTGGTCAATAAATAATAACCACTTAAAATAAAATAACATCAACTCCGAAAGGTTAATTAATTAATTAATTAATTATTTATTTTTAGAAGAATCCGAAAAGTTAATTATATATCAAAAGAACAATTACGGATATAAAATATTAATAAATTTTATTGTATATACTTAATAATATTTAGTTGATATTAATTAATAAGGACTAAGTAAAGTTAAATTGTTTATAACATTTCATAATACAATTATCTCAACTTACAAAAATAATATAGCTTTTATTAGAATAAAAATTATTAGTGGAAAATAGTTAAATTTTAGTTGTATATTTTATTTATTGTTTAACAAATTCAATAATAAACAATGGTTAATAAAAATTGAGTATCAATTAATTAATCAGAAGAAAAGTTATTGGTAGTTTAGAAAAGAAGTTGTAAAATTGTAAAATAATTATCAAAATGTCGTAGATGAGTTGTTAAATATATGCAAAAGCCTTTGAGCTTGGTTGTAAATTTTGCAGTTGTAGTGCTTTTCTTTGTGGCTGTCTGGGTGCGGGAGGACAACAACAATAGAAAAGACCTATATATTGTGATTTCAATTTTAATTTCCGTTGTGATTTCAATTTGAATTTGTATTTGATATCCAATATCCAATGTTTCACATTCATCTACTTGGCCTAATTAATATGTAACTGGAGCATGAATTATTTATCGTATGGTGCCAAGTTTTAAACTTTTAATATAGTGATTAATAAAACAAGAGTG

mRNA sequence

ATGAGTGACTACAAGCAAGAGCAACCACCGGCTCCCGTGGTCGTCCCTTCGTATGAAGGTCATCCACCAGCAGGATATCCTGTGCAGGGCTGTCCTCCTCCGGCGTTCGGTCAACCTCCACCTCAAAATCACAAACACAAACAACGAGGAGCAGGAGAATGTTGTGGTTCGTGCTTGGGAAGCTTTTGTAGTGCTTTTCTTTGTGGCTGTCTGGGTGCGGGAGGACAACAACAATAG

Coding sequence (CDS)

ATGAGTGACTACAAGCAAGAGCAACCACCGGCTCCCGTGGTCGTCCCTTCGTATGAAGGTCATCCACCAGCAGGATATCCTGTGCAGGGCTGTCCTCCTCCGGCGTTCGGTCAACCTCCACCTCAAAATCACAAACACAAACAACGAGGAGCAGGAGAATGTTGTGGTTCGTGCTTGGGAAGCTTTTGTAGTGCTTTTCTTTGTGGCTGTCTGGGTGCGGGAGGACAACAACAATAG

Protein sequence

MSDYKQEQPPAPVVVPSYEGHPPAGYPVQGCPPPAFGQPPPQNHKHKQRGAGECCGSCLGSFCSAFLCGCLGAGGQQQ

Homology

[Close]

BLAST of Spg011464 vs. TAIR 10
Match: AT3G49845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.5e-04
Identity = 30/69 (43.48%), Postives = 35/69 (50.72%), Query Frame = 0


Query: 4   YKQEQPPAPVVVPSY-EGHPPAGYPVQGCPPPAFGQPPPQNHKHKQRGAGECCGSCLGSF 63
           Y Q  P      P Y +GHPP  YP QG PPP +GQ PP+N K K+   G   G      
Sbjct: 57  YGQGYPAQGYPPPQYPQGHPPQ-YPYQGPPPPHYGQAPPKNKKDKKDSGGFMEG------ 116

Query: 64  CSAFLCGCL 72
           C A LC C+
Sbjct: 117 CLAMLCCCV 118

The following BLAST results are available for this feature:

BLAST of Spg011464 vs.


Match Name	E-value	Identity	Description

BLAST of Spg011464 vs.


Match Name	E-value	Identity	Description

BLAST of Spg011464 vs.


Match Name	E-value	Identity	Description

BLAST of Spg011464 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49845.1	1.5e-04	43.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg011464.1	Spg011464.1	mRNA