Spg011307 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg011307
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold8: 10222568 .. 10223653 (+)
RNA-Seq Expression	Spg011307
Synteny	Spg011307

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGATATTGAGCTCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGATGTTGATTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGTGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCTTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATATACTTGATATGCCTTGCTAGATTCTTAATGACGGACTTGCGAAATGTTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTTTGACTAAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCAGATTTAGAGTTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTATTTCAAAATATTTTCCACTTTTCAGGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTTATATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCCTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATAAATATTGAAAATGGAGTTTATTGAGTGTTCAGGATGCGAAAAGAGGGCAAGGAACCGAAAAGAAGCAGTGATAGAGGCTTGGCAAAGTAGGCACATCCGAGAGCCAGCGTCTCGACGCTGGTCTTTGGGCGTCTCGACGCTGGAACTTTCCTTGTTTGATTCAGGCGGCAAAAGAACACAGCGTCGAGACGCTGTGTTATAG

mRNA sequence

ATGACTGAGATATTGAGCTCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCCTCACGCCGTCTTTCGGGCTAAGCTAGCAGGATGCGAAAAGAGGGCAAGGAACCGAAAAGAAGCAGTGATAGAGGCTTGGCAAAGTAGGCACATCCGAGAGCCAGCGTCTCGACGCTGGTCTTTGGGCGTCTCGACGCTGGAACTTTCCTTGTTTGATTCAGGCGGCAAAAGAACACAGCGTCGAGACGCTGTGTTATAG

Coding sequence (CDS)

ATGACTGAGATATTGAGCTCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCCTCACGCCGTCTTTCGGGCTAAGCTAGCAGGATGCGAAAAGAGGGCAAGGAACCGAAAAGAAGCAGTGATAGAGGCTTGGCAAAGTAGGCACATCCGAGAGCCAGCGTCTCGACGCTGGTCTTTGGGCGTCTCGACGCTGGAACTTTCCTTGTTTGATTCAGGCGGCAAAAGAACACAGCGTCGAGACGCTGTGTTATAG

Protein sequence

MTEILSSRLYGTVCTQVEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAGCEKRARNRKEAVIEAWQSRHIREPASRRWSLGVSTLELSLFDSGGKRTQRRDAVL

Homology

[Close]

BLAST of Spg011307 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-23
Identity = 68/102 (66.67%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 1  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPN 60
          MTEILS RL+GTVCTQ                 VEIEL VPDTLPTS ESS S+SSYF N
Sbjct: 1  MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTN 60

Query: 61 QVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAG 86
          QVMSGLH V    FN+SV STGIVRGDDVCW HAVFRAK  G
Sbjct: 61 QVMSGLHLV----FNISVESTGIVRGDDVCWLHAVFRAKTTG 98

[Close]

BLAST of Spg011307 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-23
Identity = 75/129 (58.14%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 1   MTEILSSRLYGTVCTQVEIELLVPDTLPTSAESSRSSSS----------------YFPNQ 60
           MTEILS RLYGTVCTQV+IEL +PDTLPTSAESS S+ +                YF NQ
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  VMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAGCEKRARNRKEAVIEAWQSR 114
           VMSGLH V    FNVSVGSTGIVRGDDVCW HAVFR      +K A +  E V   +QSR
Sbjct: 61  VMSGLHLV----FNVSVGSTGIVRGDDVCWLHAVFR------DKTAVDPGECVTTWYQSR 119

[Close]

BLAST of Spg011307 vs. NCBI nr
Match: KAA0025361.1 (uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa] >TYK23441.1 uncharacterized protein E5676_scaffold605G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-20
Identity = 67/102 (65.69%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 1  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPN 60
          MTEILS RLYGTVCTQ                 VEIEL V DTL   AES  S+SSYF N
Sbjct: 1  MTEILSLRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVLDTLLMFAESFGSNSSYFTN 60

Query: 61 QVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAG 86
          QVMSGLH V    FNVSVGST IVRGDDVCW HAVFRAK AG
Sbjct: 61 QVMSGLHLV----FNVSVGSTWIVRGDDVCWLHAVFRAKTAG 98

[Close]

BLAST of Spg011307 vs. NCBI nr
Match: KAA0064296.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01032.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-17
Identity = 55/69 (79.71%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 17  VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPH 76
           VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC  H
Sbjct: 588 VEIELSVPDTLPTSAESYGSNSSYFTNQVMSGLHLV----FNVSVGSTGIVRGDDVCCLH 647

Query: 77  AVFRAKLAG 86
            VFRAK AG
Sbjct: 648 VVFRAKTAG 652

[Close]

BLAST of Spg011307 vs. NCBI nr
Match: TYK05030.1 (uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-15
Identity = 61/138 (44.20%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 1   MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPN 60
           MTEILS +LY TVCT                  VEIEL VPDTLPTSAES   +     +
Sbjct: 1   MTEILSLKLYSTVCTHVIFPLSTLSVLSDNDAVVEIELPVPDTLPTSAESFNQTPVRGWS 60

Query: 61  QVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAGCEKRARNRKEAVIEAWQS 120
            ++S        RFNVSVGS GI+RGDDVCW HAVFRAK+AG  +         +  WQ+
Sbjct: 61  CILSLFMLKCFVRFNVSVGSIGIIRGDDVCWLHAVFRAKIAGSPRGG-------VTTWQN 120

[Close]

BLAST of Spg011307 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 68/102 (66.67%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 1  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPN 60
          MTEILS RL+GTVCTQ                 VEIEL VPDTLPTS ESS S+SSYF N
Sbjct: 1  MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTN 60

Query: 61 QVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAG 86
          QVMSGLH V    FN+SV STGIVRGDDVCW HAVFRAK  G
Sbjct: 61 QVMSGLHLV----FNISVESTGIVRGDDVCWLHAVFRAKTTG 98

[Close]

BLAST of Spg011307 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 75/129 (58.14%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 1   MTEILSSRLYGTVCTQVEIELLVPDTLPTSAESSRSSSS----------------YFPNQ 60
           MTEILS RLYGTVCTQV+IEL +PDTLPTSAESS S+ +                YF NQ
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  VMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAGCEKRARNRKEAVIEAWQSR 114
           VMSGLH V    FNVSVGSTGIVRGDDVCW HAVFR      +K A +  E V   +QSR
Sbjct: 61  VMSGLHLV----FNVSVGSTGIVRGDDVCWLHAVFR------DKTAVDPGECVTTWYQSR 119

[Close]

BLAST of Spg011307 vs. ExPASy TrEMBL
Match: A0A5D3DIE3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00440 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 67/102 (65.69%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 1  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPN 60
          MTEILS RLYGTVCTQ                 VEIEL V DTL   AES  S+SSYF N
Sbjct: 1  MTEILSLRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVLDTLLMFAESFGSNSSYFTN 60

Query: 61 QVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAG 86
          QVMSGLH V    FNVSVGST IVRGDDVCW HAVFRAK AG
Sbjct: 61 QVMSGLHLV----FNVSVGSTWIVRGDDVCWLHAVFRAKTAG 98

[Close]

BLAST of Spg011307 vs. ExPASy TrEMBL
Match: A0A5A7VD33 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00370 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.8e-18
Identity = 55/69 (79.71%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 17  VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPH 76
           VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC  H
Sbjct: 588 VEIELSVPDTLPTSAESYGSNSSYFTNQVMSGLHLV----FNVSVGSTGIVRGDDVCCLH 647

Query: 77  AVFRAKLAG 86
            VFRAK AG
Sbjct: 648 VVFRAKTAG 652

[Close]

BLAST of Spg011307 vs. ExPASy TrEMBL
Match: A0A5D3C0X3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002850 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.1e-16
Identity = 61/138 (44.20%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 1   MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPN 60
           MTEILS +LY TVCT                  VEIEL VPDTLPTSAES   +     +
Sbjct: 1   MTEILSLKLYSTVCTHVIFPLSTLSVLSDNDAVVEIELPVPDTLPTSAESFNQTPVRGWS 60

Query: 61  QVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAGCEKRARNRKEAVIEAWQS 120
            ++S        RFNVSVGS GI+RGDDVCW HAVFRAK+AG  +         +  WQ+
Sbjct: 61  CILSLFMLKCFVRFNVSVGSIGIIRGDDVCWLHAVFRAKIAGSPRGG-------VTTWQN 120

The following BLAST results are available for this feature:

BLAST of Spg011307 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01041.1	2.5e-23	66.67	uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]	[more]
KAA0062407.1	3.2e-23	58.14	uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0025361.1	2.6e-20	65.69	uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0064296.1	1.2e-17	79.71	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK...	[more]
TYK05030.1	1.5e-15	44.20	uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]	[more]

BLAST of Spg011307 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg011307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BMJ4	1.2e-23	66.67	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7V638	1.6e-23	58.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DIE3	1.2e-20	65.69	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VD33	5.8e-18	79.71	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3C0X3	7.1e-16	44.20	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Spg011307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg011307.1	Spg011307.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity