Spg011135 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg011135
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	E3 ubiquitin-protein ligase COP1-like
Location	scaffold4: 25402918 .. 25404768 (+)
RNA-Seq Expression	Spg011135
Synteny	Spg011135

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAAGTATCCAAACGTCGTCGCGTGAAGCGCAAGGCAGGACGCGTCAAGGTAGTCCGAACTGATACCCCCTCGCCTCCAACCACTGATTCTGAAAGAGAAAATGCAGAGAGAGAGGAGCAGGAGAAGAAAGAAGCAGAGGATAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGATTGCGCAAGCAAAGGGCAGATAGGGGCAAGAGTGTTGCTGCAGCATCGGAGGAACCTGACGAAATAGAAGAGCCACAGTTGCCGTATGTTCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCTGAGTTGCTGAAAATAGACTTCCTGTTTGAGAGAGTATTCAATGGTGATCTTCCACATTTTCTGAGGGCCGGCATTACGAACCTGATGCGCAATTTGCTAACCGCAAGTGTACGGGTCAAGTAATAATATAGTGTTTTCGTGTAAAACGAGTGTCGTCCTCTGGATTGGATTTCTAGCAAATTAAGTACCGTGGATACTTTTGTTCAATTTTATTTAGGGAGCAAAACTCAAAGATAAAGATAAAAGTAAAGACAAAAAGCATAAAATAAAGGTGGAGACTCAAATGGAAAGACTCTTAGGGAATTGATTTCATTGTTGAGATTGAGGATAAATTAATGGGATGAATTTAGCATGCAATTATTCTACCAAGTCTAGGAACCTTTTATCACAACTATCTCTCCCGAGCATAATTGATTCTCATGCATGCAACCAACTTGATATCCCTATCTAAGTTCATTAACATGCAAGGCTTTGGGTTTAGTTCTTCAAGCAACTTCTAAAGTTATTCCAAATCCCGACACAAACTTAGAATTTCTACTTTAGTCATGCAATTAAATAAAGTAAGTCTTAGGCCAAATCCCCTCTCCCGAGCAAGATTCAACACTCAAATCATTCAACTAGTGATCAAGTAATTGAAAGCATTTAACCATAATTGCATAGGTAAAATATATGCATATTCATACCACAAATCAATCCAACAACCTAAAACAACTACATCAATCCCTAAGACAAACAACTAGCAATTCATAGTCTTTAAACTACAAACACTAATTGAAAGAAAAGCCATAAAAACTACAAGAGTTAAGGGAAAGAGAAAGGAAAACTCGAATCCGCCGACACCGCACGTCCCCGTCACGATCTCCACGTCTTCTCGCTTGATTCCCGCTCCTTGGCCTTGCCTTTAGCTCCCACAAAAGGTCTCTAGTCGAAATTAGGGCTAAAATCTCACCAATTGGACTCCCTTTGGCCGTAGCATGAAAAGATGAATTTATAGAAAATCTGGCGACAGCGTCGAGACGCTATGGACAGCGTCGCGACGCTGTCGCGATACCGCATTTTTGGAAAATTTGCCTATAGCGTCGCGACGCTATGATTTTTTTTTTTTTTTTTTTTTTTTTTTTAGATTGAAGACTCCATTTGACTCCAATTGCTGAATTAAGCTTCAAACACATACTTCCTACAAATAAAACATAAAAATGCATAAATTTGGGCAAATAATTGTAAAAGACTAGCTTAATTAATCAGAGAAAAATAACTAGCTATGCTCGCTATCAGAACCACGGCTGGGAGTTGTTTTGTTCAAAGCCGGAATCTCTGAATGCGCAGGTAGTGCGCGAGTTTTATGCAAATATTGACAAAGAAGACGGTCTCCAAGTGATCGTTCGAGGTGTTGAGGTCGACTGGAGTCCTGGTGCTATTAACGGACTGTACAACCTTCAAGATTTCCCCCACGCAGCATATAATGAGATGGTTGTGGCGCCATCTAATGAGCAGCTGAGCGACGCTGTGAGGGAAGTTGGTATTGATGGGGCGTAG

mRNA sequence

ATGTCGGAAGTATCCAAACGTCGTCGCGTGAAGCGCAAGGCAGGACGCGTCAAGGTAGTCCGAACTGATACCCCCTCGCCTCCAACCACTGATTCTGAAAGAGAAAATGCAGAGAGAGAGGAGCAGGAGAAGAAAGAAGCAGAGGATAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGATTGCGCAAGCAAAGGGCAGATAGGGGCAAGAGTGTTGCTGCAGCATCGGAGGAACCTGACGAAATAGAAGAGCCACAGTTGCCGTATGTTCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCTGAGTTGCTGAAAATAGACTTCCTGTTTGAGAGAGTATTCAATGGTGATCTTCCACATTTTCTGAGGGCCGGCATTACGAACCTGATGCGCAATTTGCTAACCGCAAGTGTACGGGTCAACTATGCTCGCTATCAGAACCACGGCTGGGAGTTGTTTTGTTCAAAGCCGGAATCTCTGAATGCGCAGGTAGTGCGCGAGTTTTATGCAAATATTGACAAAGAAGACGGTCTCCAAGTGATCGTTCGAGGTGTTGAGGTCGACTGGAGTCCTGGTGCTATTAACGGACTGTACAACCTTCAAGATTTCCCCCACGCAGCATATAATGAGATGGTTGTGGCGCCATCTAATGAGCAGCTGAGCGACGCTGTGAGGGAAGTTGGTATTGATGGGGCGTAG

Coding sequence (CDS)

ATGTCGGAAGTATCCAAACGTCGTCGCGTGAAGCGCAAGGCAGGACGCGTCAAGGTAGTCCGAACTGATACCCCCTCGCCTCCAACCACTGATTCTGAAAGAGAAAATGCAGAGAGAGAGGAGCAGGAGAAGAAAGAAGCAGAGGATAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGATTGCGCAAGCAAAGGGCAGATAGGGGCAAGAGTGTTGCTGCAGCATCGGAGGAACCTGACGAAATAGAAGAGCCACAGTTGCCGTATGTTCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCTGAGTTGCTGAAAATAGACTTCCTGTTTGAGAGAGTATTCAATGGTGATCTTCCACATTTTCTGAGGGCCGGCATTACGAACCTGATGCGCAATTTGCTAACCGCAAGTGTACGGGTCAACTATGCTCGCTATCAGAACCACGGCTGGGAGTTGTTTTGTTCAAAGCCGGAATCTCTGAATGCGCAGGTAGTGCGCGAGTTTTATGCAAATATTGACAAAGAAGACGGTCTCCAAGTGATCGTTCGAGGTGTTGAGGTCGACTGGAGTCCTGGTGCTATTAACGGACTGTACAACCTTCAAGATTTCCCCCACGCAGCATATAATGAGATGGTTGTGGCGCCATCTAATGAGCAGCTGAGCGACGCTGTGAGGGAAGTTGGTATTGATGGGGCGTAG

Protein sequence

MSEVSKRRRVKRKAGRVKVVRTDTPSPPTTDSERENAEREEQEKKEAEDKAREEAEKKAEEERLRKQRADRGKSVAAASEEPDEIEEPQLPYVRFVNNLARAKYAELLKIDFLFERVFNGDLPHFLRAGITNLMRNLLTASVRVNYARYQNHGWELFCSKPESLNAQVVREFYANIDKEDGLQVIVRGVEVDWSPGAINGLYNLQDFPHAAYNEMVVAPSNEQLSDAVREVGIDGA

Homology

[Close]

BLAST of Spg011135 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 72.0 bits (175), Expect = 7.7e-09
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 152 HGWELFCSKPESLNAQVVREFYANIDKEDGLQVIVRGVEVDWSPGAINGLYNLQDFPHAA 211
           H W+LFC+ PE L A +VREFYAN+   D   V VRGV+V  S  AIN +Y L D P   
Sbjct: 61  HNWQLFCAHPEDLIAPLVREFYANMTNPDDDTVYVRGVQVPLSAEAINTIYGLGD-PVDE 120

Query: 212 YNEMVVAPSNEQLSDAVREVGIDGA 237
           ++E V A +  +L+  +  V I GA
Sbjct: 121 HSEFVEAITEPELATVLETVAIAGA 144

[Close]

BLAST of Spg011135 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-06
Identity = 32/85 (37.65%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 152 HGWELFCSKPESLNAQVVREFYANIDKEDGLQVIVRGVEVDWSPGAINGLYNLQDFPHAA 211
           H W+ FC+ PE     +VREFYAN+   +   V VRGV+V WS  AIN ++ L D P   
Sbjct: 70  HNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDE 129

Query: 212 YNEMVVAPSNEQLSDAVREVGIDGA 237
           ++E +   + + L   +  V   GA
Sbjct: 130 HSEFIQNITQQDLITVLETVAAAGA 153

[Close]

BLAST of Spg011135 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-05
Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 152 HGWELFCSKPESLNAQVVREFYANIDKEDGLQVIVRGVEVDWSPGAINGLYNLQDFPHAA 211
           H W+ FC+ PE     +VREFYAN+       V VRGV+V WS  AIN ++ L D P   
Sbjct: 61  HNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGD-PVDE 120

Query: 212 YNEMVVAPSNEQLSDAVREVGIDGA 237
           ++E +   +   L   +  V + GA
Sbjct: 121 HSEFIENITEHDLITVLETVAVAGA 144

[Close]

BLAST of Spg011135 vs. NCBI nr
Match: PON85987.1 (hypothetical protein TorRG33x02_181920, partial [Trema orientale])

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-05
Identity = 32/85 (37.65%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 152 HGWELFCSKPESLNAQVVREFYANIDKEDGLQVIVRGVEVDWSPGAINGLYNLQDFPHAA 211
           H W  FC+ PE     +VREFYAN+   +   V VRGV+V W+  AIN ++ L D P   
Sbjct: 93  HNWRQFCAHPEDPIVPLVREFYANLTDPEEDTVYVRGVQVPWTEEAINTVFGLGD-PVDE 152

Query: 212 YNEMVVAPSNEQLSDAVREVGIDGA 237
           ++E V   + ++L   +  V   GA
Sbjct: 153 HSEFVADITEQELIMVLETVAAAGA 176

[Close]

BLAST of Spg011135 vs. NCBI nr
Match: PON32444.1 (hypothetical protein PanWU01x14_361130 [Parasponia andersonii])

HSP 1 Score: 59.7 bits (143), Expect = 3.9e-05
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 152 HGWELFCSKPESLNAQVVREFYANIDKEDGLQVIVRGVEVDWSPGAINGLYNLQDFPHAA 211
           H W  FC+ PE     +VREFYA++   +   V VRG++V WS  AIN +Y L D P   
Sbjct: 14  HNWRQFCAHPEDPIVPLVREFYAHLTDPEEDTVYVRGMQVPWSEEAINAVYGLGD-PVDE 73

Query: 212 YNEMVVAPSNEQLSDAVREVGIDGA 237
           ++E +   +  +L   +  +   GA
Sbjct: 74  HSEFIADLTEPELITVLETIAAAGA 97

[Close]

BLAST of Spg011135 vs. ExPASy TrEMBL
Match: A0A2P5B0K0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-09
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 152 HGWELFCSKPESLNAQVVREFYANIDKEDGLQVIVRGVEVDWSPGAINGLYNLQDFPHAA 211
           H W+LFC+ PE L A +VREFYAN+   D   V VRGV+V  S  AIN +Y L D P   
Sbjct: 61  HNWQLFCAHPEDLIAPLVREFYANMTNPDDDTVYVRGVQVPLSAEAINTIYGLGD-PVDE 120

Query: 212 YNEMVVAPSNEQLSDAVREVGIDGA 237
           ++E V A +  +L+  +  V I GA
Sbjct: 121 HSEFVEAITEPELATVLETVAIAGA 144

[Close]

BLAST of Spg011135 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-06
Identity = 32/85 (37.65%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 152 HGWELFCSKPESLNAQVVREFYANIDKEDGLQVIVRGVEVDWSPGAINGLYNLQDFPHAA 211
           H W+ FC+ PE     +VREFYAN+   +   V VRGV+V WS  AIN ++ L D P   
Sbjct: 70  HNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDE 129

Query: 212 YNEMVVAPSNEQLSDAVREVGIDGA 237
           ++E +   + + L   +  V   GA
Sbjct: 130 HSEFIQNITQQDLITVLETVAAAGA 153

[Close]

BLAST of Spg011135 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.6e-06
Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 152 HGWELFCSKPESLNAQVVREFYANIDKEDGLQVIVRGVEVDWSPGAINGLYNLQDFPHAA 211
           H W+ FC+ PE     +VREFYAN+       V VRGV+V WS  AIN ++ L D P   
Sbjct: 61  HNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGD-PVDE 120

Query: 212 YNEMVVAPSNEQLSDAVREVGIDGA 237
           ++E +   +   L   +  V + GA
Sbjct: 121 HSEFIENITEHDLITVLETVAVAGA 144

[Close]

BLAST of Spg011135 vs. ExPASy TrEMBL
Match: A0A2P5EK98 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_181920 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 32/85 (37.65%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 152 HGWELFCSKPESLNAQVVREFYANIDKEDGLQVIVRGVEVDWSPGAINGLYNLQDFPHAA 211
           H W  FC+ PE     +VREFYAN+   +   V VRGV+V W+  AIN ++ L D P   
Sbjct: 93  HNWRQFCAHPEDPIVPLVREFYANLTDPEEDTVYVRGVQVPWTEEAINTVFGLGD-PVDE 152

Query: 212 YNEMVVAPSNEQLSDAVREVGIDGA 237
           ++E V   + ++L   +  V   GA
Sbjct: 153 HSEFVADITEQELIMVLETVAAAGA 176

[Close]

BLAST of Spg011135 vs. ExPASy TrEMBL
Match: A0A2P5A7C9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_361130 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 152 HGWELFCSKPESLNAQVVREFYANIDKEDGLQVIVRGVEVDWSPGAINGLYNLQDFPHAA 211
           H W  FC+ PE     +VREFYA++   +   V VRG++V WS  AIN +Y L D P   
Sbjct: 14  HNWRQFCAHPEDPIVPLVREFYAHLTDPEEDTVYVRGMQVPWSEEAINAVYGLGD-PVDE 73

Query: 212 YNEMVVAPSNEQLSDAVREVGIDGA 237
           ++E +   +  +L   +  +   GA
Sbjct: 74  HSEFIADLTEPELITVLETIAAAGA 97

The following BLAST results are available for this feature:

BLAST of Spg011135 vs. NCBI nr


Match Name	E-value	Identity	Description
PON42276.1	7.7e-09	45.88	hypothetical protein PanWU01x14_283280 [Parasponia andersonii]	[more]
PON46472.1	6.1e-06	37.65	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON35554.1	1.4e-05	37.65	hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]	[more]
PON85987.1	2.3e-05	37.65	hypothetical protein TorRG33x02_181920, partial [Trema orientale]	[more]
PON32444.1	3.9e-05	35.29	hypothetical protein PanWU01x14_361130 [Parasponia andersonii]	[more]

BLAST of Spg011135 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg011135 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5B0K0	3.7e-09	45.88	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE...	[more]
A0A2P5BCG4	2.9e-06	37.65	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5AGA5	6.6e-06	37.65	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5EK98	1.1e-05	37.65	Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_181...	[more]
A0A2P5A7C9	1.9e-05	35.29	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_361130 PE...	[more]

BLAST of Spg011135 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg011135.1	Spg011135.1	mRNA