Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATAATCTCAACGCCGAGGAGATTGCAAAAGGGCTGATTTTAATGTGGAGTATATGGACGTATAGGAATAAAATTGAACATTCTCATTTTGTTCCAGCAGCAGAGCATTTACAGAAAAGCGTGGAAAGCAACATCAAAGATTGGGAAATTGAGTACCTATCAGCTCCGTTGAAGGGAAGATCTTGGAGCCACGGGAATCAAGAATTGTGGGAAGCCCCAAAGCCGAACTCCTGGAAGCTTAATTCAGACGCAGCGTGGAGCGAGAAAGAGAATTGCGGAGGAATCGGTTGGGTGGTTCATGATTCGAATGGATCCCTGATTTGTTGTGGATCGAAAGCGATTAGTCGAAATTGGCCCATTAAAACGTTGGAGGCTAAAACGATTTTAGAAGGGATGAGAATGGTGGCGGATACCTGTTCTCGGCGCCGGATCCCTCTCGATATTGAGTCTGATGCCATGGAGGTCATCAGAGTCTTGGTAGGCGATGCGGAAGAATTATCGGAGACGAAAGTTGTAACGGACTCGATCATCAGCTAA
mRNA sequence
ATGGTGGATAATCTCAACGCCGAGGAGATTGCAAAAGGGCTGATTTTAATGTGGAGTATATGGACGTATAGGAATAAAATTGAACATTCTCATTTTGTTCCAGCAGCAGAGCATTTACAGAAAAGCGTGGAAAGCAACATCAAAGATTGGGAAATTGAGTACCTATCAGCTCCGTTGAAGGGAAGATCTTGGAGCCACGGGAATCAAGAATTGTGGGAAGCCCCAAAGCCGAACTCCTGGAAGCTTAATTCAGACGCAGCGTGGAGCGAGAAAGAGAATTGCGGAGGAATCGGTTGGGTGGTTCATGATTCGAATGGATCCCTGATTTGTTGTGGATCGAAAGCGATTAGTCGAAATTGGCCCATTAAAACGTTGGAGGCTAAAACGATTTTAGAAGGGATGAGAATGGTGGCGGATACCTGTTCTCGGCGCCGGATCCCTCTCGATATTGAGTCTGATGCCATGGAGGTCATCAGAGTCTTGGTAGGCGATGCGGAAGAATTATCGGAGACGAAAGTTGTAACGGACTCGATCATCAGCTAA
Coding sequence (CDS)
ATGGTGGATAATCTCAACGCCGAGGAGATTGCAAAAGGGCTGATTTTAATGTGGAGTATATGGACGTATAGGAATAAAATTGAACATTCTCATTTTGTTCCAGCAGCAGAGCATTTACAGAAAAGCGTGGAAAGCAACATCAAAGATTGGGAAATTGAGTACCTATCAGCTCCGTTGAAGGGAAGATCTTGGAGCCACGGGAATCAAGAATTGTGGGAAGCCCCAAAGCCGAACTCCTGGAAGCTTAATTCAGACGCAGCGTGGAGCGAGAAAGAGAATTGCGGAGGAATCGGTTGGGTGGTTCATGATTCGAATGGATCCCTGATTTGTTGTGGATCGAAAGCGATTAGTCGAAATTGGCCCATTAAAACGTTGGAGGCTAAAACGATTTTAGAAGGGATGAGAATGGTGGCGGATACCTGTTCTCGGCGCCGGATCCCTCTCGATATTGAGTCTGATGCCATGGAGGTCATCAGAGTCTTGGTAGGCGATGCGGAAGAATTATCGGAGACGAAAGTTGTAACGGACTCGATCATCAGCTAA
Protein sequence
MVDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEIEYLSAPLKGRSWSHGNQELWEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSETKVVTDSIIS
Homology
BLAST of Spg010991 vs. NCBI nr
Match:
XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])
HSP 1 Score: 96.3 bits (238), Expect = 2.9e-16
Identity = 62/185 (33.51%), Postives = 97/185 (52.43%), Query Frame = 0
Query: 1 MVDNLNAEEIAKGLILMWSIWTYRNKI----EHSHFVPAAEHLQKSVESNIKDWEIEYLS 60
M+D + E++ LI W IW +RN + EHS F + L K V E Y S
Sbjct: 1 MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVT------ESSYQS 60
Query: 61 -APLKGRSWSHGNQELWEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSLICCGSKA 120
L + N+ WE P + W LN+DA+WS+ + GGIGW++ +G ++ G++
Sbjct: 61 ETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRF 120
Query: 121 ISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSETKVVT 180
+ +K LEA ILEG+R + + R PL IE+D+ EV +L E+L++T V
Sbjct: 121 VEACNNVKLLEASAILEGLRNLTNLGVLR--PLHIETDSAEVESLLNRKREDLTKTGWVV 177
BLAST of Spg010991 vs. NCBI nr
Match:
XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])
HSP 1 Score: 93.6 bits (231), Expect = 1.9e-15
Identity = 57/181 (31.49%), Postives = 93/181 (51.38%), Query Frame = 0
Query: 1 MVDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKS----VESNI-KDWEIEYL 60
+V+ L+ EE+A +++ W IW RN+ + L +S + SNI K I
Sbjct: 22 LVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQT 81
Query: 61 SAPLKGRSW-SHGNQEL------WEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSL 120
+ + G + L W AP N WKLN+DA+WSE+ GGIGW++ D G +
Sbjct: 82 RRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEI 141
Query: 121 ICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEEL 170
+ G+ I I LE TI+ G++ + + R P+ +ESD++EVIR++ + +L
Sbjct: 142 VLAGNCKIREKKEINALELMTIIRGLQFIN---MQSRSPIYLESDSVEVIRLMKKEDVDL 199
BLAST of Spg010991 vs. NCBI nr
Match:
XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])
HSP 1 Score: 90.5 bits (223), Expect = 1.6e-14
Identity = 56/182 (30.77%), Postives = 86/182 (47.25%), Query Frame = 0
Query: 2 VDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEIEYLSAPLKG 61
+D EE + +I+ W IW RNK P +Q +++ I + + LKG
Sbjct: 1 MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIIN--SAGRNTNLKG 60
Query: 62 RSWSHGNQEL-------------WEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSL 121
+S N++L W+ P NSWKLN++AAW N GGIGW++ D G +
Sbjct: 61 KS---TNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEV 120
Query: 122 ICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEEL 171
I + I I LE I EG+R + R P+ +ESD++E I +L ++
Sbjct: 121 IKASCRIIRAERNITYLEVMAICEGLRAIRQEHCR---PIHLESDSLEAIHLLHRQCQDQ 174
BLAST of Spg010991 vs. NCBI nr
Match:
XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])
HSP 1 Score: 85.9 bits (211), Expect = 3.9e-13
Identity = 59/196 (30.10%), Postives = 87/196 (44.39%), Query Frame = 0
Query: 2 VDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEI---EYL--- 61
+D EE + +I+ W IW RNK + K V S +D ++ Y+
Sbjct: 1 MDKAGEEERRRSMIIAWQIWEMRNK-----------SIFKGVHSETRDIQLVIDRYIINS 60
Query: 62 ---SAPLKGRSWSHGNQEL-------------WEAPKPNSWKLNSDAAWSEKENCGGIGW 121
LKG+S N++L W+ P NSWKLN+DAAW N GGIGW
Sbjct: 61 AGRDTNLKGKS---ANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGW 120
Query: 122 VVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSR-----RRIPLDIESDA 171
++ D G +I + I I LE I EG+R + R P+ +ESD+
Sbjct: 121 ILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDS 180
BLAST of Spg010991 vs. NCBI nr
Match:
XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])
HSP 1 Score: 84.0 bits (206), Expect = 1.5e-12
Identity = 51/167 (30.54%), Postives = 77/167 (46.11%), Query Frame = 0
Query: 1 MVDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNI-----KDWEIEYL 60
++D EE + +I+ IW RNK +Q +++ I +D ++
Sbjct: 178 LMDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDTNLKRK 237
Query: 61 SAPLKG-RSWSHGNQELWEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSLICCGSK 120
S R + W+ P NSWKLN+DAAW N GIGW++ D G +I G +
Sbjct: 238 SKDFHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCR 297
Query: 121 AISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVL 162
I I LE I EG+R + R P+ +ESD++E I +L
Sbjct: 298 IIRAERNITYLEVMAICEGLRAIRQEHCR---PIHLESDSLEAIHLL 341
BLAST of Spg010991 vs. ExPASy TrEMBL
Match:
A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)
HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 62/185 (33.51%), Postives = 97/185 (52.43%), Query Frame = 0
Query: 1 MVDNLNAEEIAKGLILMWSIWTYRNKI----EHSHFVPAAEHLQKSVESNIKDWEIEYLS 60
M+D + E++ LI W IW +RN + EHS F + L K V E Y S
Sbjct: 1 MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVT------ESSYQS 60
Query: 61 -APLKGRSWSHGNQELWEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSLICCGSKA 120
L + N+ WE P + W LN+DA+WS+ + GGIGW++ +G ++ G++
Sbjct: 61 ETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRF 120
Query: 121 ISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSETKVVT 180
+ +K LEA ILEG+R + + R PL IE+D+ EV +L E+L++T V
Sbjct: 121 VEACNNVKLLEASAILEGLRNLTNLGVLR--PLHIETDSAEVESLLNRKREDLTKTGWVV 177
BLAST of Spg010991 vs. ExPASy TrEMBL
Match:
A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)
HSP 1 Score: 93.6 bits (231), Expect = 9.1e-16
Identity = 57/181 (31.49%), Postives = 93/181 (51.38%), Query Frame = 0
Query: 1 MVDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKS----VESNI-KDWEIEYL 60
+V+ L+ EE+A +++ W IW RN+ + L +S + SNI K I
Sbjct: 22 LVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQT 81
Query: 61 SAPLKGRSW-SHGNQEL------WEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSL 120
+ + G + L W AP N WKLN+DA+WSE+ GGIGW++ D G +
Sbjct: 82 RRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEI 141
Query: 121 ICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEEL 170
+ G+ I I LE TI+ G++ + + R P+ +ESD++EVIR++ + +L
Sbjct: 142 VLAGNCKIREKKEINALELMTIIRGLQFIN---MQSRSPIYLESDSVEVIRLMKKEDVDL 199
BLAST of Spg010991 vs. ExPASy TrEMBL
Match:
A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)
HSP 1 Score: 90.5 bits (223), Expect = 7.7e-15
Identity = 56/182 (30.77%), Postives = 86/182 (47.25%), Query Frame = 0
Query: 2 VDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEIEYLSAPLKG 61
+D EE + +I+ W IW RNK P +Q +++ I + + LKG
Sbjct: 1 MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIIN--SAGRNTNLKG 60
Query: 62 RSWSHGNQEL-------------WEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSL 121
+S N++L W+ P NSWKLN++AAW N GGIGW++ D G +
Sbjct: 61 KS---TNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEV 120
Query: 122 ICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEEL 171
I + I I LE I EG+R + R P+ +ESD++E I +L ++
Sbjct: 121 IKASCRIIRAERNITYLEVMAICEGLRAIRQEHCR---PIHLESDSLEAIHLLHRQCQDQ 174
BLAST of Spg010991 vs. ExPASy TrEMBL
Match:
A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 1.9e-13
Identity = 59/196 (30.10%), Postives = 87/196 (44.39%), Query Frame = 0
Query: 2 VDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEI---EYL--- 61
+D EE + +I+ W IW RNK + K V S +D ++ Y+
Sbjct: 1 MDKAGEEERRRSMIIAWQIWEMRNK-----------SIFKGVHSETRDIQLVIDRYIINS 60
Query: 62 ---SAPLKGRSWSHGNQEL-------------WEAPKPNSWKLNSDAAWSEKENCGGIGW 121
LKG+S N++L W+ P NSWKLN+DAAW N GGIGW
Sbjct: 61 AGRDTNLKGKS---ANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGW 120
Query: 122 VVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSR-----RRIPLDIESDA 171
++ D G +I + I I LE I EG+R + R P+ +ESD+
Sbjct: 121 ILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDS 180
BLAST of Spg010991 vs. ExPASy TrEMBL
Match:
A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 7.2e-13
Identity = 54/168 (32.14%), Postives = 84/168 (50.00%), Query Frame = 0
Query: 13 GLILMWSIWTYRNKIEHSHF-VPAAEHLQKSVESNIKDWEIEYLSAPLKGRSWSHGNQEL 72
GL+L+WSIWTYRN+I HS P ++ ++ ES I ++ L L +
Sbjct: 19 GLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTN-LGGNLNMEDKNLPRTVG 78
Query: 73 WEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSLICCGS-KAISRNWPIKTLEAKTI 132
W P + WKLN DA W + + GG+GW+V DS G I KA+S++ TLEA
Sbjct: 79 WTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLKALSQS---LTLEA--- 138
Query: 133 LEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSETKVVTDSI 179
I +++ESD +EV+ ++ + L+E ++ + I
Sbjct: 139 --------------GIKIEMESDCLEVVNIINKSSMVLTEVSLIVEDI 165
BLAST of Spg010991 vs. TAIR 10
Match:
AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )
HSP 1 Score: 50.4 bits (119), Expect = 1.7e-06
Identity = 32/123 (26.02%), Postives = 53/123 (43.09%), Query Frame = 0
Query: 16 LMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEIEYLSAPLKGRSWSHGNQEL---- 75
LMW IW N + +H Q +VE + D + E+L + +GN+
Sbjct: 47 LMWRIWKSGNDLVFNH---TRTKFQTTVEMALNDTK-EWLDNTMTNEQ-QNGNRNADPSR 106
Query: 76 ---WEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAK 132
W P + K N DA+ E+ G+GW++ +S G++I CG + E
Sbjct: 107 NTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECS 164
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022155262.1 | 2.9e-16 | 33.51 | uncharacterized protein LOC111022403 [Momordica charantia] | [more] |
XP_022143317.1 | 1.9e-15 | 31.49 | uncharacterized protein LOC111013216 [Momordica charantia] | [more] |
XP_022143535.1 | 1.6e-14 | 30.77 | uncharacterized protein LOC111013412 [Momordica charantia] | [more] |
XP_022156777.1 | 3.9e-13 | 30.10 | uncharacterized protein LOC111023608 [Momordica charantia] | [more] |
XP_022154990.1 | 1.5e-12 | 30.54 | uncharacterized protein LOC111022134 isoform X1 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DNV9 | 1.4e-16 | 33.51 | uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A6J1CQG0 | 9.1e-16 | 31.49 | uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... | [more] |
A0A6J1CP26 | 7.7e-15 | 30.77 | uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... | [more] |
A0A6J1DSV1 | 1.9e-13 | 30.10 | uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A6J1D4B6 | 7.2e-13 | 32.14 | uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017... | [more] |
Match Name | E-value | Identity | Description | |
AT5G65005.1 | 1.7e-06 | 26.02 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | [more] |