Spg010732 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010732
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold10: 7790855 .. 7792679 (+)
RNA-Seq Expression	Spg010732
Synteny	Spg010732

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGGCTGCGATAGAAGAAGAAAATCAATGTTTGGTGTCTACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTCAAACTGTTCGATGAATTAAGCAGTGACAGGAAGCTTCAAAGTATTGTCCCGTCACGTATGAAAAGGAAGTTCTTTGTTCTCATAAATACAGAAGGTTCATTGACGGTGAAGCCAAATCTCATTATCGTGACCAATCCTACAAGTGAAGGATCTAATCCAGCCAAGGATGAAGATAAGAGCTTTTAAAATGTAAAAGTTCCTGATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACATGAGCTTAAAAGGTGAGTGAAAAAAAAAATTCCTGAACTACGTTATGACTTGATCCCTATTCCTTAAGGGTACGTAGGCAGCTTAAAAAAAACTTTAAGTTCAGTCTCTATAAACACAAAAAGAAAGTGCAACAAATATTGAAGCACGACAAGACAAATTGAAAAAACTCATCACTACTGGGGGAAACACAACAAATTGAAGTTGTGCACCGTTATGAATGTGAAGCTACGAGTTGGATGAATAAAAGAAAACTTCATTCCTCCAAATTCAATGTCTCGTTAGCCTCAAAGTTCGGTGTTTCACTCACCCTAAGTTTGTTGTTCCCTTCCCACCAAGTTCGAAGGTTCTTGTGCGCTTCGCTGGAGTTCCTTCCCACCAAGTTCGAAGGTTCTCACATGCTTCACTGGAGTTCCTTCCCACCAAGTTCGAAGATTCTCACGCGCTTTGCTGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTGCTTCGTTGCAGTTTCTTCTCCCTAAGTTTGAAGGTTCTTCGATGCACGCTCCTGCGTTGCTCCTTCTTCCGTTGCTCCTTCTCCAAGTCCGAAGGTTTGCACGTTGTTATGCTGCTTTGTTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTTAATTGGCAATAAAAGTGTGTCAAATAAAAAAAAATCAAAATTTTGAACAAAATTCTTGTTTTGATTAAATTGACACATCAAACGGAGTCAAAATCAAGAACAAATACCTTGCATTTTGATTCCAAAATATGTTTTTCGAGATTCACTCACATAATTTGTGCCTAAATCTCAAAAAGGGGCATTTGTTAAAAGAGAAAATTTGACCAATCACAAATTGCCACGTCATTACATGAAATTAATGACGAAATTATAATTAATTAAATTTGGAACCAATTATAAATTGACATGTGTCCCAAATTTAATTTGAAGACAATTGGCCAATTATAAATTTATAGAGCCAAATTTCTATTTGATCAATTAATTAAAATTAAATTATTTTGATCAAATTAATTAAAAATAATAATTATTTGGATCAAATTTGGGTCTTTTAAATATTTGGGTCATGGTTTTGGGTTAAATATGAACCAGACCCAAGACTAAATAGTTGAGCCCAAGCCCAAGTTGTTGGCCCAAAAGTCACCAAGGCCCATCTAGCGAGAACTCTATAAATAAGAGGGGTTCTCTTCCATTTTAGGGGAGGAGAAGTTGGAAGCTCCCAGCCAGAACCAAAGAATTCCAGAGAAGACTCTTCAAGACTTCTTGAAGACTGAGACTAGAAGACTTCAACAATTCTTGAAGACCAAAGACTCTCCAAGTCTTCAAGACCGCCAAGACTTCTTGAAGACTGAAGACCCTTCAAGACTAGAAGACTTCAAAAATCCTTGA

mRNA sequence

ATGAGTATGGCTGCGATAGAAGAAGAAAATCAATGTTTGGTGTCTACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTCAAACTGTTCGATGAATTAAGCAGTGACAGGAAGCTTCAAAGTATTGTCCCGTCACGTATGAAAAGGAAGTTCTTTGTTCTCATAAATACAGAAGGTTCTTGTGCGCTTCGCTGGAGTTCCTTCCCACCAAGTTCGAAGGTTCTCACATGCTTCACTGGAGTTCCTTCCCACCAAGTTCGAAGATTCTCACGCGCTTTGCTGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTGCTTCGTTGCAGTTTCTTCTCCCTAAGTTTGAAGGTTCTTCGATGCACGCTCCTGCGTTGCTCCTTCTTCCGTTGCTCCTTCTCCAAGTCCGAAGGGGAGGAGAAGTTGGAAGCTCCCAGCCAGAACCAAAGAATTCCAGAGAAGACTCTTCAAGACTTCTTGAAGACTGAGACTAGAAGACTTCAACAATTCTTGAAGACCAAAGACTCTCCAAGTCTTCAAGACCGCCAAGACTTCTTGAAGACTGAAGACCCTTCAAGACTAGAAGACTTCAAAAATCCTTGA

Coding sequence (CDS)

ATGAGTATGGCTGCGATAGAAGAAGAAAATCAATGTTTGGTGTCTACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTCAAACTGTTCGATGAATTAAGCAGTGACAGGAAGCTTCAAAGTATTGTCCCGTCACGTATGAAAAGGAAGTTCTTTGTTCTCATAAATACAGAAGGTTCTTGTGCGCTTCGCTGGAGTTCCTTCCCACCAAGTTCGAAGGTTCTCACATGCTTCACTGGAGTTCCTTCCCACCAAGTTCGAAGATTCTCACGCGCTTTGCTGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTGCTTCGTTGCAGTTTCTTCTCCCTAAGTTTGAAGGTTCTTCGATGCACGCTCCTGCGTTGCTCCTTCTTCCGTTGCTCCTTCTCCAAGTCCGAAGGGGAGGAGAAGTTGGAAGCTCCCAGCCAGAACCAAAGAATTCCAGAGAAGACTCTTCAAGACTTCTTGAAGACTGAGACTAGAAGACTTCAACAATTCTTGAAGACCAAAGACTCTCCAAGTCTTCAAGACCGCCAAGACTTCTTGAAGACTGAAGACCCTTCAAGACTAGAAGACTTCAAAAATCCTTGA

Protein sequence

MSMAAIEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDELSSDRKLQSIVPSRMKRKFFVLINTEGSCALRWSSFPPSSKVLTCFTGVPSHQVRRFSRALLEFLLSKFEGSHVLRCSFFSLSLKVLRCTLLRCSFFRCSFSKSEGEEKLEAPSQNQRIPEKTLQDFLKTETRRLQQFLKTKDSPSLQDRQDFLKTEDPSRLEDFKNP

Homology

[Close]

BLAST of Spg010732 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-20
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1   MSMAAIEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEV 60
           +SMA  EEENQC  ST+ R SAF+RLS+STSKK R STS FDRLK+T+DQ QR+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDELSSDRKLQSIVPSRMKRKFFVLINTEGSCALR 98
           K F E + D K+ S VPSRMKRK  V INTEGS  ++
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVK 247

[Close]

BLAST of Spg010732 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-20
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1   MSMAAIEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEV 60
           +SMA  EEENQC  ST+ R SAF+RLS+STSKK R STS FDRLK+T+DQ QR+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDELSSDRKLQSIVPSRMKRKFFVLINTEGSCALR 98
           K F E + D K+ S VPSRMKRK  V INTEGS  ++
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTVK 188

[Close]

BLAST of Spg010732 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-20
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1   MSMAAIEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEV 60
           +SMA  EEENQC +ST+ R SAF+RLS+STSKK R STS FDRLK+T+DQ QR+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDELSSDRKLQSIVPSRMKRKFFVLINTEGSCALR 98
           K F E + D K+ S VPSRMKRK  V INTEGS  ++
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVK 188

[Close]

BLAST of Spg010732 vs. NCBI nr
Match: TYK00108.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 7.3e-20
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1   MSMAAIEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEV 60
           +SMA  EE+NQC  ST TR SAF+RLS+STSKK R STS FDR+K+ +DQ QR+M +L+ 
Sbjct: 151 LSMATKEEKNQCPTSTCTRTSAFKRLSISTSKKDRPSTSAFDRVKMINDQQQREMKSLKA 210

Query: 61  KLFDELSSDRKLQSIVPSRMKRKFFVLINTEGSCALR 98
           K F E + D K+ S VPSRMKRK FV INTEGS  ++
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLFVDINTEGSLTVK 247

[Close]

BLAST of Spg010732 vs. NCBI nr
Match: KAA0063719.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-20
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 1   MSMAAIEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEV 60
           +SMA  EEENQC  ST+ R S F+RLS+STSKK R STS FDRLK+T+DQ QR+M  L+ 
Sbjct: 216 LSMATKEEENQCPTSTYARTSTFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKFLKA 275

Query: 61  KLFDELSSDRKLQSIVPSRMKRKFFVLINTEGSCALR 98
           K F E + D K+ S VPSRMKRK  V INTEGS  L+
Sbjct: 276 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTLK 312

[Close]

BLAST of Spg010732 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1   MSMAAIEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEV 60
           +SMA  EEENQC  ST+ R SAF+RLS+STSKK R STS FDRLK+T+DQ QR+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDELSSDRKLQSIVPSRMKRKFFVLINTEGSCALR 98
           K F E + D K+ S VPSRMKRK  V INTEGS  ++
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTVK 188

[Close]

BLAST of Spg010732 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1   MSMAAIEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEV 60
           +SMA  EEENQC  ST+ R SAF+RLS+STSKK R STS FDRLK+T+DQ QR+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDELSSDRKLQSIVPSRMKRKFFVLINTEGSCALR 98
           K F E + D K+ S VPSRMKRK  V INTEGS  ++
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVK 247

[Close]

BLAST of Spg010732 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-20
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1   MSMAAIEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEV 60
           +SMA  EEENQC +ST+ R SAF+RLS+STSKK R STS FDRLK+T+DQ QR+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDELSSDRKLQSIVPSRMKRKFFVLINTEGSCALR 98
           K F E + D K+ S VPSRMKRK  V INTEGS  ++
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVK 188

[Close]

BLAST of Spg010732 vs. ExPASy TrEMBL
Match: A0A5D3BLW3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00640 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-20
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1   MSMAAIEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEV 60
           +SMA  EE+NQC  ST TR SAF+RLS+STSKK R STS FDR+K+ +DQ QR+M +L+ 
Sbjct: 151 LSMATKEEKNQCPTSTCTRTSAFKRLSISTSKKDRPSTSAFDRVKMINDQQQREMKSLKA 210

Query: 61  KLFDELSSDRKLQSIVPSRMKRKFFVLINTEGSCALR 98
           K F E + D K+ S VPSRMKRK FV INTEGS  ++
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLFVDINTEGSLTVK 247

[Close]

BLAST of Spg010732 vs. ExPASy TrEMBL
Match: A0A5A7VDY3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002440 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.6e-20
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 1   MSMAAIEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEV 60
           +SMA  EEENQC  ST+ R S F+RLS+STSKK R STS FDRLK+T+DQ QR+M  L+ 
Sbjct: 216 LSMATKEEENQCPTSTYARTSTFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKFLKA 275

Query: 61  KLFDELSSDRKLQSIVPSRMKRKFFVLINTEGSCALR 98
           K F E + D K+ S VPSRMKRK  V INTEGS  L+
Sbjct: 276 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTLK 312

The following BLAST results are available for this feature:

BLAST of Spg010732 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044978.1	2.5e-20	61.86	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0050734.1	2.5e-20	61.86	gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol...	[more]
KAA0036008.1	5.6e-20	60.82	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK00108.1	7.3e-20	60.82	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0063719.1	9.5e-20	61.86	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg010732 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010732 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BBF9	1.2e-20	61.86	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TQ06	1.2e-20	61.86	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7SZJ7	2.7e-20	60.82	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3BLW3	3.5e-20	60.82	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VDY3	4.6e-20	61.86	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Spg010732 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010732.1	Spg010732.1	mRNA