Spg010652 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010652
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	transcription elongation factor TFIIS
Location	scaffold2: 2264417 .. 2266210 (-)
RNA-Seq Expression	Spg010652
Synteny	Spg010652

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCGCGGGTGCGATGTCTTTTGATTCGATGGTATTCTTTTTCTTTTTCATTGAGAAAATAAGTCGAATTCGATTTTGATTGCGATAATCCCCCCTTTCTTTGTATGCGTCTGTTTGTATCTTTCCCTTTTATGTTGTTGTTGGGATCTGATCATTCTTTTCTTCGAATGTGGTGGATAGGTTATATAAAAATTCCAAGTTGGCGGTGATTCGATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGACGTCGCTGCAGCATCATCAAATGATGGGGGAGCCGAGGAAAGTCGTTGTCTAGATGCCTACGGCAGCTCAAGAAATTTCCTGTACTTATCAAATCCTTGTTTCCACTCAGGTTTTCTTCTCATTAGACTTGAAATTTGTTTCTTTGTTGATGGTGGATGATAGTCAAAACGTAAAAAGCCGACTAGTTTGTAAAATCATACATCGTTTTTATTATGAATTAAGCCAAAAACTCTTTGTTCTTTTTTTTTTGGCTTACGAATTGGTTTCATATCGAGCTGAGTTCACTATATTTCATCTGTTTATTTGAGTTGTTCACATGACGAAATCATCTCACCTGTGACTCTTAAGTTTTGGAATAATACTCTGGTTGAATTCTTATAATTCCTTTTCCCGTGTGATTGAGGTTCATTTGCCTGTGTTGATAGTTTCGTTATCTTGTCCTCTGTAGGTTGGGAAGCGGCTTCGGCACCTCACTAAACACCCCAGGAAGAAAATACAGGACTATGCTTCTGACCTGATTGAGATGTGGAAGGACCATAGTAATCAAGGAGACCAACAAGAATAAGAAAAATGGAAATGACAACTGTAAAGAGCGACCTAAAATTGGTTCTCCCAGTGCAGAGTCCGTTAAGGTGGAGAAGTTTCAAAATCATCTTCCATGAAGGTTGAGAAAGTTTCCAAGGTTGAGCACTTCGATAGGAATGGTGCTACAAGCTCTGTAAAATTTCCAGATCAGAAAGTGCCATCTCGGAGAAAAACTCTGTCAAGGTTGAGAAAACGATTCAGTTGTCAAGGTTGAAAGAATAGTTAAAGAAGAGAAGAAAATCTCAATAGAAAAGAAACCATCAGGTGGGGTTGCTACACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGGGACAAAATTAGAGAACTTCTCTTTGAGGCCTTCTCCAAGGTTCCTGGCGAGGCTGATGAAGATGTTATAGATGAAGTAAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACCGGAGCACAAAAGGCCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGGAGAAAAGTTCTTCTTGGACTTATCAAGCCAGAAAGGGTGATCAACTTGAGCACAACTGATATGGCAAGTGATCAGAGAAAACGTGAGAATGAGGAGATTGCACAAAAGGCTTTATTTGATTGTGAGCGTGGAGGAGCTCCAAAAGCTACTACCGATCAGTTCAAGTGTGGTCGATGTGGTCAACGCAAGACAACCTACTATCAGTTGCAGACGCGGAGTGCTGATGAACCTATGACCACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTTTTGTTGAGTTTCTCGTGAGCTACTGAAAATGTTAATTGTTTGGAACAATTTACTGAGCTGCTAGTGTTATTTTGGCTTGACACTGGTTGCAGTCTGTAATCTCGTTCCACATTGCTACATTTAG

mRNA sequence

ATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGACGTCGCTGCAGCATCATCAAATGATGGGGGAGCCGAGGAAAGTCGTTGTCTAGATGCCTACGGCAGCTCAAGAAATTTCCTGTACTTATCAAATCCTTGTTTCCACTCAGTAATCAAGGAGACCAACAAGAATAAGAAAAATGGAAATGACAACTGTAAAGAGCGACCTAAAATTGGTTCTCCCAGTGCAGAGTCCGTTAAGGTTGAAAGAATAGTTAAAGAAGAGAAGAAAATCTCAATAGAAAAGAAACCATCAGGTGGGGTTGCTACACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGGGACAAAATTAGAGAACTTCTCTTTGAGGCCTTCTCCAAGGTTCCTGGCGAGGCTGATGAAGATGTTATAGATGAAGTAAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACCGGAGCACAAAAGGCCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGGAGAAAAGTTCTTCTTGGACTTATCAAGCCAGAAAGGGTGATCAACTTGAGCACAACTGATATGGCAATCTGTAATCTCGTTCCACATTGCTACATTTAG

Coding sequence (CDS)

ATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGACGTCGCTGCAGCATCATCAAATGATGGGGGAGCCGAGGAAAGTCGTTGTCTAGATGCCTACGGCAGCTCAAGAAATTTCCTGTACTTATCAAATCCTTGTTTCCACTCAGTAATCAAGGAGACCAACAAGAATAAGAAAAATGGAAATGACAACTGTAAAGAGCGACCTAAAATTGGTTCTCCCAGTGCAGAGTCCGTTAAGGTTGAAAGAATAGTTAAAGAAGAGAAGAAAATCTCAATAGAAAAGAAACCATCAGGTGGGGTTGCTACACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGGGACAAAATTAGAGAACTTCTCTTTGAGGCCTTCTCCAAGGTTCCTGGCGAGGCTGATGAAGATGTTATAGATGAAGTAAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACCGGAGCACAAAAGGCCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGGAGAAAAGTTCTTCTTGGACTTATCAAGCCAGAAAGGGTGATCAACTTGAGCACAACTGATATGGCAATCTGTAATCTCGTTCCACATTGCTACATTTAG

Protein sequence

MENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNFLYLSNPCFHSVIKETNKNKKNGNDNCKERPKIGSPSAESVKVERIVKEEKKISIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERVINLSTTDMAICNLVPHCYI

Homology

[Close]

BLAST of Spg010652 vs. NCBI nr
Match: XP_038884917.1 (transcription elongation factor TFIIS [Benincasa hispida])

HSP 1 Score: 308.9 bits (790), Expect = 3.6e-80
Identity = 185/303 (61.06%), Postives = 195/303 (64.36%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNFLY--------------- 60
           MENELVELF+AAKKAAD AAA SNDGGAEESRCLDA    + F                 
Sbjct: 1   MENELVELFQAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  ----------------LSNPCFHSVIKETNKNKKNGNDNCKERPKIGSPSAESVKVERI- 120
                           L       VIKETNKNKKNGN NCK+ PKIGSPSAESVKVE+  
Sbjct: 61  HLTKHPKKKIQEYASDLVEMWKEIVIKETNKNKKNGNGNCKDSPKIGSPSAESVKVEKFQ 120

Query: 121 ------------------------------------------------------VKEEKK 180
                                                                 VKEE++
Sbjct: 121 KSSSMKVERVSKVEQFDKNGATGSVKYSRLESAVSERNSVKVEKTDSAVKVEGTVKEERR 180

Query: 181 ISIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPI 218
           ISI+KKPSGG A PPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDV+DEVNASDPI
Sbjct: 181 ISIDKKPSGGTAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI 240

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BLAST of Spg010652 vs. NCBI nr
Match: KAG6578486.1 (Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 303.1 bits (775), Expect = 2.0e-78
Identity = 186/303 (61.39%), Postives = 194/303 (64.03%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNF-------------LYLS 60
           MENELVELFEAAKKAAD AAA SNDGGAEESRCLDA    + F               L 
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  NPCFHS------------------VIKETNKNKKNGNDNCKERPKIGSPSAES------- 120
           +   H                   VIKETNKNKKNGN +CKE PKIGSPSAES       
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120

Query: 121 ------------------------------------------------VKVERIVKEEKK 180
                                                           VKVERIVKEEK+
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNSVKVEKTDSVVKVERIVKEEKR 180

Query: 181 ISIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPI 218
           ISIEKKPS G   PPKLTSMIKSKDAARDKIRELLFEAFSKVP EADEDV+DEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

[Close]

BLAST of Spg010652 vs. NCBI nr
Match: KAG7016050.1 (Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.1 bits (775), Expect = 2.0e-78
Identity = 186/303 (61.39%), Postives = 194/303 (64.03%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNF-------------LYLS 60
           MENELVELFEAAKKAAD AAA SNDGGAEESRCLDA    + F               L 
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  NPCFHS------------------VIKETNKNKKNGNDNCKERPKIGSPSAES------- 120
           +   H                   VIKETNKNKKNGN +CKE PKIGSPSAES       
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKETNKNKKNGNIDCKESPKIGSPSAESVKVEKFR 120

Query: 121 ------------------------------------------------VKVERIVKEEKK 180
                                                           VKVERIVKEEK+
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRLESDISGKNSVKVEKTDSVVKVERIVKEEKR 180

Query: 181 ISIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPI 218
           ISIEKKPS G   PPKLTSMIKSKDAARDKIRELLFEAFSKVP EADEDV+DEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

[Close]

BLAST of Spg010652 vs. NCBI nr
Match: XP_022134049.1 (transcription elongation factor TFIIS [Momordica charantia] >XP_022134050.1 transcription elongation factor TFIIS [Momordica charantia])

HSP 1 Score: 302.0 bits (772), Expect = 4.4e-78
Identity = 183/305 (60.00%), Postives = 192/305 (62.95%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNFLY--------------- 60
           MENELVELFEAAKKAAD AAA SNDGGAEESRCLDA    + F                 
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  ----------------LSNPCFHSVIKETNKNKKNGNDNCKERPKIGSPSAESVKV---- 120
                           L       VIKETNKNKKNGN NCKE PKIGSPSAESVKV    
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKEIVIKETNKNKKNGNGNCKESPKIGSPSAESVKVEKFQ 120

Query: 121 -----------------------------------------------------ERIVKEE 180
                                                                ER+VKEE
Sbjct: 121 KSSSMKVERVSKVEQSDRNGTTSSVKYSRSESVISEKNIVKVEKTDSLEKVKAERVVKEE 180

Query: 181 KKISIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASD 218
           KKISI+K+PS G A PPKLTSMIKSKDAARDKIRELL EAFSKVPGEADEDVIDEVNASD
Sbjct: 181 KKISIDKRPSSGTAAPPKLTSMIKSKDAARDKIRELLCEAFSKVPGEADEDVIDEVNASD 240

[Close]

BLAST of Spg010652 vs. NCBI nr
Match: XP_022938772.1 (transcription elongation factor TFIIS-like [Cucurbita moschata])

HSP 1 Score: 300.4 bits (768), Expect = 1.3e-77
Identity = 184/303 (60.73%), Postives = 194/303 (64.03%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNF-------------LYLS 60
           MENELVELFEAAKKAAD AAA SNDGGAEESRCLDA    + F               L 
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  NPCFHS------------------VIKETNKNKKNGNDNCKERPKIGSPSAES------- 120
           +   H                   VIK+TNKNKKNGN +C+E PKIGSPSAES       
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 120

Query: 121 ------------------------------------------------VKVERIVKEEKK 180
                                                           VKVERIVKEEK+
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 180

Query: 181 ISIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPI 218
           ISIEKKPS G   PPKLTSMIKSKDAARDKIRELLFEAFSKVP EADEDV+DEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

[Close]

BLAST of Spg010652 vs. ExPASy Swiss-Prot
Match: Q9ZVH8 (Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-37
Identity = 124/306 (40.52%), Postives = 152/306 (49.67%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADVAAASS-NDGGAEESRCLDAYGSSRNF-------------LYL 60
           ME++L++LFE AKKAAD AA       G E S+C+DA    + F               L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  SNPCFHS------------------VIKETNKNKK-NGNDNCK---------ERPKIGSP 120
            +   H                   VI+ET K KK  G + CK         E+P   +P
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAP 120

Query: 121 ----------SAESVKVERI---------VKEEKKI------------------------ 180
                     SA+S+KVER          VK E+K+                        
Sbjct: 121 VKVQKLQRGDSAKSIKVERKEPDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEKVS 180

Query: 181 ----SIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNAS 218
               S  K P+     PPKLT+M+K  D  RDKIRELL EA  +V GEAD+   + VNAS
Sbjct: 181 KDNQSSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVNAS 240

[Close]

BLAST of Spg010652 vs. ExPASy Swiss-Prot
Match: Q92576 (PHD finger protein 3 OS=Homo sapiens OX=9606 GN=PHF3 PE=1 SV=3)

HSP 1 Score: 58.9 bits (141), Expect = 8.5e-08
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 90   KEEKKISIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVN 149
            +E KK  +EK   G +   P  ++   S D  R  +R  L +   K   +++  V +E  
Sbjct: 899  QEMKKKKVEK---GVLNVHPAASASKPSADQIRQSVRHSLKDILMKRLTDSNLKVPEEKA 958

Query: 150  ASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERVI 209
            A    +VA  +E  +F  +  +    K KYRS+MFNLKDPKN    +KVL G + P+ +I
Sbjct: 959  A----KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLI 1018

Query: 210  NLSTTDMA 218
             +S  ++A
Sbjct: 1019 RMSPEELA 1019

[Close]

BLAST of Spg010652 vs. ExPASy Swiss-Prot
Match: Q15560 (Transcription elongation factor A protein 2 OS=Homo sapiens OX=9606 GN=TCEA2 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.4e-05
Identity = 48/169 (28.40%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 53  SVIKETNKNKKNGNDNCKERPK-IGSPSAESVKVERIVKEEKKISIEKKPSGGVATPPKL 112
           S+IK   K     +   +ER + +  P++     E      K+  + + PS      P++
Sbjct: 71  SLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPS-----TPRI 130

Query: 113 TS---MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENW 172
           T+   +  + DA R+K RE+L  A      + D D +     +D  R++  +E  +F + 
Sbjct: 131 TTFPPVPVTCDAVRNKCREMLTAAL-----QTDHDHV--AIGADCERLSAQIEECIFRDV 190

Query: 173 GGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERVINLSTTDMA 218
           G +    K + RS + NLKD KNPD RR VL G I P+++  +++ +MA
Sbjct: 191 GNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMA 227

[Close]

BLAST of Spg010652 vs. ExPASy Swiss-Prot
Match: Q6ZMY3 (SPOC domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SPOCD1 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05
Identity = 35/145 (24.14%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 75  IGSPSAESVKVERIVKEEKKISIEKKPSGGVATPPKLTSM-IKSKDAARDKIRELLFEAF 134
           +G PS++    +    E ++ S+ ++P        +  S+ I  +      ++E+L+   
Sbjct: 565 LGDPSSDPACSQSGPMEAEEDSLPEQPEDSAQLQQEKPSLYIGVRGTVVRSMQEVLWTRL 624

Query: 135 SKVPGEA-DEDVIDEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNP 194
            ++P     E+V++         +A  +E+ +++   G+ G  K KYRS++FNL+DP+N 
Sbjct: 625 RELPDPVLSEEVVE--------GIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNL 684

Query: 195 DFRRKVLLGLIKPERVINLSTTDMA 218
           D   KV+ G + P  ++ +S+  +A
Sbjct: 685 DLFLKVVHGDVTPYDLVRMSSMQLA 701

[Close]

BLAST of Spg010652 vs. ExPASy Swiss-Prot
Match: Q148K0 (Transcription elongation factor A protein 2 OS=Bos taurus OX=9913 GN=TCEA2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.0e-05
Identity = 50/170 (29.41%), Postives = 82/170 (48.24%), Query Frame = 0


Query: 53  SVIKETNKNKKNGNDNCKERPKIGSPSAESVKVERIVKE--EKKISIEKKPSGGVATPPK 112
           S+IK   K     +   +ER + GS    S K     ++   K+  + + PS      P+
Sbjct: 71  SLIKSWKKLLDASDAKARERRRGGSLPTSSSKEASEAQDPSRKRPELPRMPS-----TPR 130

Query: 113 LTS---MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFEN 172
           +T+   +  + DA R K RE+L  A      + D D +     +D   +A  +E  +F +
Sbjct: 131 ITTFPPVPVTCDAVRTKCREMLTAAL-----QTDHDHV--AIGADCECLAGQIEECIFRD 190

Query: 173 WGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERVINLSTTDMA 218
            G +    K + RS + NLKD KNP  RRKVL G I P+++  +++ +MA
Sbjct: 191 VGNTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMA 228

[Close]

BLAST of Spg010652 vs. ExPASy TrEMBL
Match: A0A6J1BWY6 (transcription elongation factor TFIIS OS=Momordica charantia OX=3673 GN=LOC111006416 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 2.1e-78
Identity = 183/305 (60.00%), Postives = 192/305 (62.95%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNFLY--------------- 60
           MENELVELFEAAKKAAD AAA SNDGGAEESRCLDA    + F                 
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  ----------------LSNPCFHSVIKETNKNKKNGNDNCKERPKIGSPSAESVKV---- 120
                           L       VIKETNKNKKNGN NCKE PKIGSPSAESVKV    
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKEIVIKETNKNKKNGNGNCKESPKIGSPSAESVKVEKFQ 120

Query: 121 -----------------------------------------------------ERIVKEE 180
                                                                ER+VKEE
Sbjct: 121 KSSSMKVERVSKVEQSDRNGTTSSVKYSRSESVISEKNIVKVEKTDSLEKVKAERVVKEE 180

Query: 181 KKISIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASD 218
           KKISI+K+PS G A PPKLTSMIKSKDAARDKIRELL EAFSKVPGEADEDVIDEVNASD
Sbjct: 181 KKISIDKRPSSGTAAPPKLTSMIKSKDAARDKIRELLCEAFSKVPGEADEDVIDEVNASD 240

[Close]

BLAST of Spg010652 vs. ExPASy TrEMBL
Match: A0A6J1FF11 (transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC111444888 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 6.2e-78
Identity = 184/303 (60.73%), Postives = 194/303 (64.03%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNF-------------LYLS 60
           MENELVELFEAAKKAAD AAA SNDGGAEESRCLDA    + F               L 
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  NPCFHS------------------VIKETNKNKKNGNDNCKERPKIGSPSAES------- 120
           +   H                   VIK+TNKNKKNGN +C+E PKIGSPSAES       
Sbjct: 61  HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 120

Query: 121 ------------------------------------------------VKVERIVKEEKK 180
                                                           VKVERIVKEEK+
Sbjct: 121 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 180

Query: 181 ISIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPI 218
           ISIEKKPS G   PPKLTSMIKSKDAARDKIRELLFEAFSKVP EADEDV+DEVNASDPI
Sbjct: 181 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 240

[Close]

BLAST of Spg010652 vs. ExPASy TrEMBL
Match: A0A6J1JLK7 (transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111486982 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 3.1e-77
Identity = 189/303 (62.38%), Postives = 193/303 (63.70%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNF-------------LYLS 60
           ME ELVELFEAAKKAAD AAA SNDGGAEESRCLDA    + F               L 
Sbjct: 1   MEKELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  NPCFHS------------------VIKETNKNKKNGNDNCKERPKIGSPSAES------- 120
           +   H                   VIKETNKNKKNGN N KE  KIGSPSAES       
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENFQ 120

Query: 121 ------------------------------------------------VKVERIVKEEKK 180
                                                           VKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFNRIGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKK 180

Query: 181 ISIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPI 218
           ISIEKKPS G A PPKLTSMIKSKDAARDKIRELL EAFSKVPGEADEDVIDEVNASDPI
Sbjct: 181 ISIEKKPS-GAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPI 240

[Close]

BLAST of Spg010652 vs. ExPASy TrEMBL
Match: A0A6J1GYA3 (transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC111458597 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 3.1e-77
Identity = 189/303 (62.38%), Postives = 193/303 (63.70%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNF-------------LYLS 60
           ME ELVELFEAAKKAAD AAA SNDGGAEESRCLDA    + F               L 
Sbjct: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  NPCFHS------------------VIKETNKNKKNGNDNCKERPKIGSPSAES------- 120
           +   H                   VIKETNKNKKNGN N KE  KIGSPSAES       
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENLQ 120

Query: 121 ------------------------------------------------VKVERIVKEEKK 180
                                                           VKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKK 180

Query: 181 ISIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPI 218
           ISIEKKPS G A PPKLTSMIKSKDAARDKIRELL EAFSKVPGEADEDVIDEVNASDPI
Sbjct: 181 ISIEKKPS-GAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPI 240

[Close]

BLAST of Spg010652 vs. ExPASy TrEMBL
Match: A0A5A7U9K1 (Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002160 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 7.6e-76
Identity = 176/297 (59.26%), Postives = 189/297 (63.64%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNFLY--------------- 60
           MENELVELFEAAKKAAD AAA SNDGGAEESRCLDA    + F                 
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  ----------------LSNPCFHSVIKETNKNKKNGNDNCKERPKIGSPSAESVKVER-- 120
                           L       VIKETNKNKKNGN + K+ PKIGSPS ESVKVE+  
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 -----------------------------------------------IVKEEKKISIEKK 180
                                                          +VK E+ +  EKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEKK 180

Query: 181 PSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSV 218
           PS G A PPKLTSM+KSKDAARDKIRELLFEAFSKVPGEADEDV+DEVNASDPIRVA+SV
Sbjct: 181 PSSGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAISV 240

[Close]

BLAST of Spg010652 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-38
Identity = 124/306 (40.52%), Postives = 152/306 (49.67%), Query Frame = 0


Query: 1   MENELVELFEAAKKAADVAAASS-NDGGAEESRCLDAYGSSRNF-------------LYL 60
           ME++L++LFE AKKAAD AA       G E S+C+DA    + F               L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  SNPCFHS------------------VIKETNKNKK-NGNDNCK---------ERPKIGSP 120
            +   H                   VI+ET K KK  G + CK         E+P   +P
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAP 120

Query: 121 ----------SAESVKVERI---------VKEEKKI------------------------ 180
                     SA+S+KVER          VK E+K+                        
Sbjct: 121 VKVQKLQRGDSAKSIKVERKEPDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEKVS 180

Query: 181 ----SIEKKPSGGVATPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNAS 218
               S  K P+     PPKLT+M+K  D  RDKIRELL EA  +V GEAD+   + VNAS
Sbjct: 181 KDNQSSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVNAS 240

[Close]

BLAST of Spg010652 vs. TAIR 10
Match: AT4G18720.1 (Transcription factor IIS protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-18
Identity = 76/218 (34.86%), Postives = 113/218 (51.83%), Query Frame = 0


Query: 2   ENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNFLYLSNPCFHSVIKETNKN 61
           + E +ELFEAA +AA   +   ++   E SR +DA    +            V+ +T+  
Sbjct: 3   KREFMELFEAALRAA--KSVKGDENSPEVSRFVDAMNRLKE---APKSLVCDVVCKTSMG 62

Query: 62  KKNGNDNCKERPKIGSPS--AESVKVERIVKEEKKISIEKKPSGGVATPPKLTSMIKSKD 121
           +        + PKI S       + ++      ++ S + + +      P   +M K+ D
Sbjct: 63  QGLEFFIDHKNPKIRSEGRILRDLWMKFFYASGREKSRDNREA--AVKIPTHATMKKTGD 122

Query: 122 AARDKIRELLFEAFSKVPGE-ADEDVIDEVNASDPIRVAVSVESVMFENWGGSTGAQKAK 181
           + RDK+RE+L  + +KV  E  D ++   V A DP  VAVSVE+ MFEN G   G QKAK
Sbjct: 123 SKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFENLGCFMGPQKAK 182

Query: 182 YRSIMFNLKDPKNPDFRRKVLLGLIKPERVINLSTTDM 217
           YRSI+FN+ D  NPD RRKVLLG I  ER++ +   +M
Sbjct: 183 YRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEM 213

[Close]

BLAST of Spg010652 vs. TAIR 10
Match: AT2G42730.1 (F-box family protein )

HSP 1 Score: 89.4 bits (220), Expect = 4.2e-18
Identity = 76/218 (34.86%), Postives = 115/218 (52.75%), Query Frame = 0


Query: 2   ENELVELFEAAKKAADVAAASSNDGGAEESRCLDAYGSSRNFLYLSNPCFHSVIKETNKN 61
           + E +EL+EAA +AA       N   ++ SR +DA    ++    S  C   V+ +T+  
Sbjct: 493 KQEFLELYEAALRAAKSVKGVKN--SSKVSRFVDARNRLKD-APTSLAC--EVVSKTSMG 552

Query: 62  KKNGNDNCKERPKIGSPS--AESVKVERIVKEEKKISIEKKPSGGVATPPKLTSMIKSKD 121
           K     N  + P I S       + ++ +    ++ S +++    +   P  ++M K+ D
Sbjct: 553 KGLSFLNDHKNPHIRSEGRLLRDLWMKILYASGREKSHDRETQVKI---PTHSTMKKTGD 612

Query: 122 AARDKIRELLFEAFSKVPGE-ADEDVIDEVNASDPIRVAVSVESVMFENWGGSTGAQKAK 181
           + RDK+RE+L  +  KV  E  D ++   V A DP  VAVSVES MFE  G   G  KAK
Sbjct: 613 SKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEKLGCFMGPHKAK 672

Query: 182 YRSIMFNLKDPKNPDFRRKVLLGLIKPERVINLSTTDM 217
           YRSI+FN+ D  NPD RRKVL+G I  ER++ +   +M
Sbjct: 673 YRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEM 702

[Close]

BLAST of Spg010652 vs. TAIR 10
Match: AT5G25520.1 (SPOC domain / Transcription elongation factor S-II protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-08
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 152 DPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERVINL 211
           DP  +A  +E  +F+ +GG     K K RS++FNLKD  NP+ R  V+ G I PER+ N+
Sbjct: 359 DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNM 418

Query: 212 STTDMA 218
           +  ++A
Sbjct: 419 TAEELA 424

[Close]

BLAST of Spg010652 vs. TAIR 10
Match: AT5G25520.2 (SPOC domain / Transcription elongation factor S-II protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-08
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 152 DPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERVINL 211
           DP  +A  +E  +F+ +GG     K K RS++FNLKD  NP+ R  V+ G I PER+ N+
Sbjct: 359 DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNM 418

Query: 212 STTDMA 218
           +  ++A
Sbjct: 419 TAEELA 424

The following BLAST results are available for this feature:

BLAST of Spg010652 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884917.1	3.6e-80	61.06	transcription elongation factor TFIIS [Benincasa hispida]	[more]
KAG6578486.1	2.0e-78	61.39	Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7016050.1	2.0e-78	61.39	Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_022134049.1	4.4e-78	60.00	transcription elongation factor TFIIS [Momordica charantia] >XP_022134050.1 tran...	[more]
XP_022938772.1	1.3e-77	60.73	transcription elongation factor TFIIS-like [Cucurbita moschata]	[more]

BLAST of Spg010652 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVH8	1.8e-37	40.52	Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS P...	[more]
Q92576	8.5e-08	32.81	PHD finger protein 3 OS=Homo sapiens OX=9606 GN=PHF3 PE=1 SV=3	[more]
Q15560	1.4e-05	28.40	Transcription elongation factor A protein 2 OS=Homo sapiens OX=9606 GN=TCEA2 PE=...	[more]
Q6ZMY3	1.8e-05	24.14	SPOC domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SPOCD1 PE=2 SV=1	[more]
Q148K0	3.0e-05	29.41	Transcription elongation factor A protein 2 OS=Bos taurus OX=9913 GN=TCEA2 PE=2 ...	[more]

BLAST of Spg010652 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWY6	2.1e-78	60.00	transcription elongation factor TFIIS OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A6J1FF11	6.2e-78	60.73	transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JLK7	3.1e-77	62.38	transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GYA3	3.1e-77	62.38	transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A5A7U9K1	7.6e-76	59.26	Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Spg010652 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38560.1	1.2e-38	40.52	transcript elongation factor IIS	[more]
AT4G18720.1	2.4e-18	34.86	Transcription factor IIS protein	[more]
AT2G42730.1	4.2e-18	34.86	F-box family protein	[more]
AT5G25520.1	1.0e-08	40.91	SPOC domain / Transcription elongation factor S-II protein	[more]
AT5G25520.2	1.0e-08	40.91	SPOC domain / Transcription elongation factor S-II protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003618	Transcription elongation factor S-II, central domain	SMART	SM00510	mid_6	coord: 119..224 e-value: 3.8E-26 score: 102.8
IPR003618	Transcription elongation factor S-II, central domain	PFAM	PF07500	TFIIS_M	coord: 119..217 e-value: 3.2E-24 score: 85.6
IPR003618	Transcription elongation factor S-II, central domain	PROSITE	PS51321	TFIIS_CENTRAL	coord: 121..217 score: 21.151768
IPR036575	Transcription elongation factor S-II, central domain superfamily	GENE3D	1.10.472.30		coord: 96..218 e-value: 6.8E-25 score: 89.5
IPR036575	Transcription elongation factor S-II, central domain superfamily	SUPERFAMILY	46942	Elongation factor TFIIS domain 2	coord: 108..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..82
None	No IPR available	PANTHER	PTHR11477	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 59..217
None	No IPR available	PANTHER	PTHR11477:SF36	TRANSCRIPTION ELONGATION FACTOR TFIIS	coord: 59..217
None	No IPR available	PANTHER	PTHR11477:SF36	TRANSCRIPTION ELONGATION FACTOR TFIIS	coord: 1..43
None	No IPR available	PANTHER	PTHR11477	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010652.1	Spg010652.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0005488	binding