Spg010590 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010590
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold5: 11033615 .. 11036462 (-)
RNA-Seq Expression	Spg010590
Synteny	Spg010590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAGATTCCTTGAAGAATATCAGCATTCAGCAGTATTTAGATGCAAAGGGTGGGGCTCTTATCAGCATGCAACAGGTAGACATTCATTATGAGGTTAAAAATAGGAAAAAATCATGTAGTACAAGGACCTTTTTCAGGACATTCCCTTTGTCATGAAAGTTTTGGCTGGTATGATAGGAATGGGAAAATGCCCATGCTTTTGTGTTTCTGCCATTCAAACAGGTAGATTAGATTGTGCCCAAGGGGAGGACTTAGCTAAAAGCCAATACTCATGGGTTTCTCACCACCACCAACCCCCCCCCCCCCCCCAAAATTAAATTCAGGGACCAAACATCCCTCGCCAACCACTCAAAACCTCTAAAAGACCCCATAGATTAGCACACATCCCGGCCTGCCAAAAGAACCTTTCTCGTGAAAAGGAGGGTGAATAATGTCTAGCAAAACTCCTAAAAATAATAACTCCAAACTGTACTAAACCACAACTCCGAACGATATGGTTAAGGTTGATGGAAGTTAGGAAGATGAGGTTATTAATAAGGCAACATCAAATTCTAAGGCATCGACCAAAGTTCTAACTTTAGTAGATGTCTCGTTCTAAGTTTGGTAGATGACAAGTTGGAGACAGATTATTTAACGTGGCAGCTTTAAATGAAAATCCAAAAGACTTAATGATCAATTCAATTTTCAAGTGGCCTTCATTAAAAAATCTTCCTCTCGTTTATATTATTCATCTCCTCAGCCTCTTCACTGCAATCAATCATTGCCAGGATATTATAGCCAAGTCAACAGTTGAATAGGGAAGTTTAGTATAAACTATTTCAAATGGTGACACTTCCATATTGTTTGGCTCTTCGTGAGTGTAAGTGATGTAGCCTATATGGCTATATCTTAACGGCTAGGAATTTGTTTTACTGTTGGCTTCTGTTTGTATTTACCATTTCATGGTTTAGTTAGAACTAATTTTACAGTTTGCAAAGTAGTTTGAAGAACTAAACTTTGGTTTGGCAAGCTATTTGTTAGATTTATAGCCGTTGGAGGCTTGGTTTGTAACTAGTATAAATACTAGTTTCGTTTCTCCTTAAGAGGTTAATAAAAAAGATGAGGATTTTTCTTCTACATTCTATAACCTAGGGCTTGATGGCTGGAAAGGACATTCAAGTAGGGGGCAAGAAAAGGATCCCCAACCAAATCCACCTGAAGTTCTCTCTCCAAAGGAAACAACTGAAAGGCTGTTGTCAGTTGACGCCTCCTTAGGAGACATACAGATGAGTGTTGAAGACATTCGGCAGATTTTGGATATGACCAAATGGTGTTATTTCATATTTTTGGAATGTCATTACTCTTTAGAAGACATTTGAAGGATGAGGAAAATTTTTAATTAAGTTATTTTTTAAATAATTTGGCATCCAGTTTATTTTCAGTTGTCTCTCACTAGGAAGCTTGCTAATTCTTCCTCTTTGCCTAAAATATATTATTTTCAGCTTTGTGGAAAACTAAGAGTCCCAAGAGAGTCAACATTCTCTTGTGGATTATGCGGAACAACAGCTTAAACACCACAAATACTCACCAAAAGAAGATGAAGCCTTCTTCAGCCTTGTTGCCTTCTATTTGGCTATTTTGTTTTGGAGCAGCATCCAATGACAAAAATATCAATATTGGTAGCAATATCGGTAACTCAGATTTACAAATATATCAACAGATATTTAAATATCGACGATACTTCAGGAAAACTCACGAATATCACAGAAACTTATAAAAATATAGTGAATTTTTTTGTGAAACTTTAGAATAAGTTTACTTAAGTAATAAACTAGTACTTTTTAAGCATATATATAATAATTATAAGCCAAATATATGCATTAATATCATAATAGATAGTATTGAAGAAGGTAAAATAAATAAAAACTTCAATAATTTTAAATTTTGGTCAACAAGTACACGATTCTTAAATCAATAATAAGATGATGTTTTCTCTTCGTTTGTCCATAATGTGATGGGTGATGGGGAGAACCTTACTGTTGGAGGATAAGTGGTTGGGGGATAGCCCCCTTTGCTCTCCATTTCCCATTTATATCAGTTATCTTCCTTGAGGAATCACTCTATGGCAGTGTTTTAAAAAGGGCACCTAGGCGCATGCCTAGGCGCAAGGCGCACGTAAGAAGGCGTGCATAAAGCACACGCCTTCCTTAAAGCCCTAAGGCAGCCTTACACCTTAGGGCTTTTTTATTTATTTAAAAAAATGTAATTTTTTTACTAACAATAAACCCAATAAATATTGCGTTTAGGGTTTTTTCTTCTTGATTAATGAAAACAAAATAGTAGTTACTAGCCCTAAACAGAAAAACCATTGCGTTTTAGAGTTTTTTTCTTCTATATAAATTAAAAAATAAATAAAATTTACTAATCCTTAGGGTGCTTTCTTCATATTCCCACTTCAAACATGCTTCCTCGTCTTTATATACGTTTTTATATATAGTGCGCATCATGCAAAAAAAAACCCACGCCTTTTCTTGCGCCTTGTGCCTAAGCCTAAAAAGGCTACTGCGCCTTAGTGCGCCTTGAGCTTTTAAAAACACCTGCTCTGTGGCCTCAATTCTTTCTTCTTCATTGGATAACTAGGCCTCCCCCTTATTTGGATTTTCACCGTCCATTGATCAATAGGAAACGACAGATGTCGTCTCTTCTCTCGCTACTGGATGCCTTTTTCTTTCATCCAGATAGGAAGGTGCACGTTTCTAGAGTCCTTGTCTATCCAAAGGTTTTTCTTGTAGCTCTTTCTTTCACTGTTGGTCCGTTCTTCCTCAGGGAGTGGTTCGATTTTCTCCTTGGTGCACATTTCTAG

mRNA sequence

ATGAAGGAAGATTCCTTGAAGAATATCAGCATTCAGCAGTATTTAGATGCAAAGGGTGGGGCTCTTATCAGCATGCAACAGGACATTCCCTTTGTCATGAAAGTTTTGGCTGGTATGATAGGAATGGGAAAATGCCCATGCTTTTGTGTTTCTGCCATTCAAACAGGGCTTGATGGCTGGAAAGGACATTCAAGTAGGGGGCAAGAAAAGGATCCCCAACCAAATCCACCTGAAGTTCTCTCTCCAAAGGAAACAACTGAAAGGCTGTTGTCAGTTGACGCCTCCTTAGGAGACATACAGATGACTTTGTGGAAAACTAAGAGTCCCAAGAGAGTCAACATTCTCTTGTGGATTATGCGGAACAACAGCTTAAACACCACAAATACTCACCAAAAGAAGATGAAGCCTTCTTCAGCCTTGTTGCCTTCTATTTGGCTATTTTGTTTTGGAGCAGCATCCAATGACAAAAATATCAATATTGGTAGCAATATCGTGCGCCTTGAGCTTTTAAAAACACCTGCTCTGTGGCCTCAATTCTTTCTTCTTCATTGGATAACTAGGCCTCCCCCTTATTTGGATTTTCACCGTCCATTGATCAATAGGAAACGACAGATGTCGTCTCTTCTCTCGCTACTGGATGCCTTTTTCTTTCATCCAGATAGGAAGGTGCACGTTTCTAGAGTCCTTGTCTATCCAAAGGTTTTTCTTGTAGCTCTTTCTTTCACTGTTGGTCCGTTCTTCCTCAGGGAGTGGTTCGATTTTCTCCTTGGTGCACATTTCTAG

Coding sequence (CDS)

ATGAAGGAAGATTCCTTGAAGAATATCAGCATTCAGCAGTATTTAGATGCAAAGGGTGGGGCTCTTATCAGCATGCAACAGGACATTCCCTTTGTCATGAAAGTTTTGGCTGGTATGATAGGAATGGGAAAATGCCCATGCTTTTGTGTTTCTGCCATTCAAACAGGGCTTGATGGCTGGAAAGGACATTCAAGTAGGGGGCAAGAAAAGGATCCCCAACCAAATCCACCTGAAGTTCTCTCTCCAAAGGAAACAACTGAAAGGCTGTTGTCAGTTGACGCCTCCTTAGGAGACATACAGATGACTTTGTGGAAAACTAAGAGTCCCAAGAGAGTCAACATTCTCTTGTGGATTATGCGGAACAACAGCTTAAACACCACAAATACTCACCAAAAGAAGATGAAGCCTTCTTCAGCCTTGTTGCCTTCTATTTGGCTATTTTGTTTTGGAGCAGCATCCAATGACAAAAATATCAATATTGGTAGCAATATCGTGCGCCTTGAGCTTTTAAAAACACCTGCTCTGTGGCCTCAATTCTTTCTTCTTCATTGGATAACTAGGCCTCCCCCTTATTTGGATTTTCACCGTCCATTGATCAATAGGAAACGACAGATGTCGTCTCTTCTCTCGCTACTGGATGCCTTTTTCTTTCATCCAGATAGGAAGGTGCACGTTTCTAGAGTCCTTGTCTATCCAAAGGTTTTTCTTGTAGCTCTTTCTTTCACTGTTGGTCCGTTCTTCCTCAGGGAGTGGTTCGATTTTCTCCTTGGTGCACATTTCTAG

Protein sequence

MKEDSLKNISIQQYLDAKGGALISMQQDIPFVMKVLAGMIGMGKCPCFCVSAIQTGLDGWKGHSSRGQEKDPQPNPPEVLSPKETTERLLSVDASLGDIQMTLWKTKSPKRVNILLWIMRNNSLNTTNTHQKKMKPSSALLPSIWLFCFGAASNDKNINIGSNIVRLELLKTPALWPQFFLLHWITRPPPYLDFHRPLINRKRQMSSLLSLLDAFFFHPDRKVHVSRVLVYPKVFLVALSFTVGPFFLREWFDFLLGAHF

Homology

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BLAST of Spg010590 vs. ExPASy TrEMBL
Match: A0A6J1DIE2 (uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020765 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.8e-04
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 103 LWKTKSPKRVNILLWIMRNNSLNTTNTHQKKMKPSSALLPSIWLFC 149
           LWKTKSP+RVN+  WI+    LNT +  QKK  PS ALLPS    C
Sbjct: 32  LWKTKSPRRVNVFCWILFQGKLNTADIIQKK-SPSDALLPSFCCLC 76

The following BLAST results are available for this feature:

BLAST of Spg010590 vs.


Match Name	E-value	Identity	Description

BLAST of Spg010590 vs.


Match Name	E-value	Identity	Description

BLAST of Spg010590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIE2	8.8e-04	56.52	uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Spg010590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010590.1	Spg010590.1	mRNA