Spg010539 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010539
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	regulation of nuclear pre-mRNA domain-containing protein 1B-like
Location	scaffold5: 11038103 .. 11039503 (+)
RNA-Seq Expression	Spg010539
Synteny	Spg010539

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTCACCAAAGAAATACTTGCAAATGGATTATTGTTTAAATGGAAGTGATAAAGTGTTAGCTGACGGTTTTGTAGATGAGAAATGGGCTAGTTTTGATTTTCTTTTTCATCTTCATTGGCACAATCTTTTATCTCAGTAAGCTGGTTGCAAATGTTCTTGTTAGAACTTAGAAGTAGGGCTGAAGTCGAAGTTTGGGTAGTTGCATGTGATATGTGAATCTCTATAGCTAAAATAAGATTATAGAGGGACATAAAGTGTAAAGAGTGGGGAGCATTAAAAATAGAAATCGATTGGCACTTTATTAAGGAAATGCTTTATAGTGGAGTAATTTACCAGCTATTCTATAATTAAACAGGTGGCTGAATCTTCATGGAGGGATTGCAAAGATTCAACCTTTGTAGCCTTAGTGAGCAAGCTAAGAATGAATGAAAGAAATCTTCAATCCAACTTGAGTGTTGGAGCATTGAAGTCAAAGGGACATCTTCCCATATTTTTATTTCATACATACCTTATTAACGCCTAATTTCCTTCTTTTGATATATTGTAATGCACCATGGTCATTCAATTCTCTGGCTTATTTTGTTTTGGTATATAGAATTCCCCCAGCTATATATTTATGTTTGTGTCGTGGGACATTATTCCTTGAAAACTATTACAAGAGAAATTCCTTCTGTACTTTCCATCCAAACTAGGAACTCAACCAAGGTCTGCATTGCTGGACGAACTTCAAGAGCAGGAAAATGTAATTCAACAATGTATTGGGCAACTCGAAACTGTTGAGGCAACTAGGGCTTCTTTGGTTTCCTTGCTTCTTGAAGCGCTTCAGGACCAAGTAACTTTCCTTCATCTTTTTTATTTCCTCCAATAATTTCTCATGATTGCAAGCCTCACTCTATATTGTTGAGATACTTTTTTTATAAAGTTGATGTCCTTGTGGAAAATTACAGGAATCAAAGCTGGAACTAGTTCGCAATCAGTTGCAGGTAAGATAAACCACTTCGTAGTTTAGATTTGGGATCACCTGTTGGCTTAAAGTAGTTTTGAAGGTGGGTCTGACATGTGCTTTATACCTTGAATCATTGAAATATGGTGCAAGATATTTGGATATGTCAAAACATTGAACTTTGGTATACCTTGAAACATTTAAATCAGAATACCAGACTTATATAATTCTTTCATTATATACACGTGGAGGTGGACATAGACGAATTTTTCCCGTAACAAGTAACACAATATGAATAAACTTGTATGAAGTGCAACAATTATGTGGGCATATTTGATTTTGGCCTTCTTAAAAAGTTTGATGTAAGATATTTGATTACTTAGAACCATAGAAATAATAGTAAAAACTCTATCCTGTTGATGTTTTGAGTTCGCTTCTAGACAGGATAACTAG

mRNA sequence

ATGCATTCACCAAAGAAATACTTGCAAATGGATTATTGTTTAAATGGAAGTGATAAAGTGTTAGCTGACGGTTTTGTAGATGAGAAATGGGCTAGTTTTGATTTTCTTTTTCATCTTCATTGGCACAATCTTTTATCTCAGTCTGCATTGCTGGACGAACTTCAAGAGCAGGAAAATGTAATTCAACAATGTATTGGGCAACTCGAAACTGTTGAGGCAACTAGGGCTTCTTTGGTTTCCTTGCTTCTTGAAGCGCTTCAGGACCAAGAATCAAAGCTGGAACTAGTTCGCAATCAGTTGCAGGATAACTAG

Coding sequence (CDS)

ATGCATTCACCAAAGAAATACTTGCAAATGGATTATTGTTTAAATGGAAGTGATAAAGTGTTAGCTGACGGTTTTGTAGATGAGAAATGGGCTAGTTTTGATTTTCTTTTTCATCTTCATTGGCACAATCTTTTATCTCAGTCTGCATTGCTGGACGAACTTCAAGAGCAGGAAAATGTAATTCAACAATGTATTGGGCAACTCGAAACTGTTGAGGCAACTAGGGCTTCTTTGGTTTCCTTGCTTCTTGAAGCGCTTCAGGACCAAGAATCAAAGCTGGAACTAGTTCGCAATCAGTTGCAGGATAACTAG

Protein sequence

MHSPKKYLQMDYCLNGSDKVLADGFVDEKWASFDFLFHLHWHNLLSQSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQDN

Homology

[Close]

BLAST of Spg010539 vs. NCBI nr
Match: KAG7027736.1 (Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-15
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           +SALLD+LQEQENV+QQCIGQLE+VEATRASLVSLL+EALQDQESKLELVRNQLQ
Sbjct: 208 RSALLDDLQEQENVVQQCIGQLESVEATRASLVSLLVEALQDQESKLELVRNQLQ 262

[Close]

BLAST of Spg010539 vs. NCBI nr
Match: XP_022971617.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita maxima] >XP_022971618.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita maxima])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-15
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           +SALLD+LQEQENV+QQCIGQLE+VEATRASLVSLL+EALQDQESKLELVRNQLQ
Sbjct: 218 RSALLDDLQEQENVVQQCIGQLESVEATRASLVSLLVEALQDQESKLELVRNQLQ 272

[Close]

BLAST of Spg010539 vs. NCBI nr
Match: XP_022939586.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita moschata] >XP_022939596.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita moschata])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-15
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           +SALLD+LQEQENV+QQCIGQLE+VEATRASLVSLL+EALQDQESKLELVRNQLQ
Sbjct: 218 RSALLDDLQEQENVVQQCIGQLESVEATRASLVSLLVEALQDQESKLELVRNQLQ 272

[Close]

BLAST of Spg010539 vs. NCBI nr
Match: KAG6596197.1 (Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-15
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           +SALLD+LQEQENV+QQCIGQLE+VEATRASLVSLL+EALQDQESKLELVRNQLQ
Sbjct: 218 RSALLDDLQEQENVVQQCIGQLESVEATRASLVSLLVEALQDQESKLELVRNQLQ 272

[Close]

BLAST of Spg010539 vs. NCBI nr
Match: XP_023539267.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita pepo subsp. pepo] >XP_023539268.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.0 bits (227), Expect = 3.1e-15
Identity = 49/55 (89.09%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           +SALLD+LQEQENV+QQCIGQLE+VEATR+SLVSLL+EALQDQESKLELVRNQLQ
Sbjct: 218 RSALLDDLQEQENVVQQCIGQLESVEATRSSLVSLLVEALQDQESKLELVRNQLQ 272

[Close]

BLAST of Spg010539 vs. ExPASy TrEMBL
Match: A0A6J1I2G4 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita maxima OX=3661 GN=LOC111470291 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.8e-16
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           +SALLD+LQEQENV+QQCIGQLE+VEATRASLVSLL+EALQDQESKLELVRNQLQ
Sbjct: 218 RSALLDDLQEQENVVQQCIGQLESVEATRASLVSLLVEALQDQESKLELVRNQLQ 272

[Close]

BLAST of Spg010539 vs. ExPASy TrEMBL
Match: A0A6J1FGC3 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita moschata OX=3662 GN=LOC111445436 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.8e-16
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           +SALLD+LQEQENV+QQCIGQLE+VEATRASLVSLL+EALQDQESKLELVRNQLQ
Sbjct: 218 RSALLDDLQEQENVVQQCIGQLESVEATRASLVSLLVEALQDQESKLELVRNQLQ 272

[Close]

BLAST of Spg010539 vs. ExPASy TrEMBL
Match: A0A6J1DF20 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Momordica charantia OX=3673 GN=LOC111019832 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.8e-15
Identity = 49/55 (89.09%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           +SALLD+LQEQE+VIQQCIGQLE+VEATR SLVSLL+EALQDQESKLELVRNQLQ
Sbjct: 218 RSALLDDLQEQESVIQQCIGQLESVEATRGSLVSLLVEALQDQESKLELVRNQLQ 272

[Close]

BLAST of Spg010539 vs. ExPASy TrEMBL
Match: A0A6J1J690 (regulation of nuclear pre-mRNA domain-containing protein 1A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481606 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.3e-14
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           +SALLD+LQEQENVIQ+CI QLE+VEATRASLVSLL+EAL DQESKLELVRNQLQ
Sbjct: 220 RSALLDDLQEQENVIQRCIRQLESVEATRASLVSLLVEALLDQESKLELVRNQLQ 274

[Close]

BLAST of Spg010539 vs. ExPASy TrEMBL
Match: A0A6J1J460 (actin cytoskeleton-regulatory complex protein PAN1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481606 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.3e-14
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           +SALLD+LQEQENVIQ+CI QLE+VEATRASLVSLL+EAL DQESKLELVRNQLQ
Sbjct: 118 RSALLDDLQEQENVIQRCIRQLESVEATRASLVSLLVEALLDQESKLELVRNQLQ 172

[Close]

BLAST of Spg010539 vs. TAIR 10
Match: AT3G26990.1 (ENTH/VHS family protein )

HSP 1 Score: 50.8 bits (120), Expect = 7.4e-07
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 49  ALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           A++ ELQ Q  +++ CI QL  +E +R SL+S L EALQ+QE KLE VRN LQ
Sbjct: 211 AVVKELQGQHVILRDCIEQLGAMETSRTSLISHLREALQEQELKLEQVRNHLQ 263

[Close]

BLAST of Spg010539 vs. TAIR 10
Match: AT5G65180.1 (ENTH/VHS family protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 25/55 (45.45%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           + +L  EL+E+EN+++Q + +L++VE +R SLV+ L EAL++QES+LE +++Q+Q
Sbjct: 218 KESLAKELEEEENILRQSVEKLKSVEESRTSLVNHLREALREQESELENLQSQIQ 272

[Close]

BLAST of Spg010539 vs. TAIR 10
Match: AT5G65180.2 (ENTH/VHS family protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 25/55 (45.45%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           + +L  EL+E+EN+++Q + +L++VE +R SLV+ L EAL++QES+LE +++Q+Q
Sbjct: 90  KESLAKELEEEENILRQSVEKLKSVEESRTSLVNHLREALREQESELENLQSQIQ 144

[Close]

BLAST of Spg010539 vs. TAIR 10
Match: AT5G10060.1 (ENTH/VHS family protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05
Identity = 23/55 (41.82%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 47  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ 102
           + +L  EL+E+E +++QCI +L++V+ +R+SLV+ L +AL++QES+L+ ++ Q+Q
Sbjct: 220 RKSLAKELEEEEYLLRQCIEKLKSVQGSRSSLVNQLKDALREQESELDNLKAQIQ 274

The following BLAST results are available for this feature:

BLAST of Spg010539 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027736.1	1.4e-15	90.91	Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita ...	[more]
XP_022971617.1	1.4e-15	90.91	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita maxi...	[more]
XP_022939586.1	1.4e-15	90.91	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita mosc...	[more]
KAG6596197.1	1.4e-15	90.91	Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita ...	[more]
XP_023539267.1	3.1e-15	89.09	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita pepo...	[more]

BLAST of Spg010539 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010539 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I2G4	6.8e-16	90.91	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita ma...	[more]
A0A6J1FGC3	6.8e-16	90.91	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita mo...	[more]
A0A6J1DF20	5.8e-15	89.09	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Momordica ch...	[more]
A0A6J1J690	8.3e-14	87.27	regulation of nuclear pre-mRNA domain-containing protein 1A-like isoform X1 OS=C...	[more]
A0A6J1J460	8.3e-14	87.27	actin cytoskeleton-regulatory complex protein PAN1-like isoform X2 OS=Cucurbita ...	[more]

BLAST of Spg010539 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26990.1	7.4e-07	54.72	ENTH/VHS family protein	[more]
AT5G65180.1	2.2e-06	45.45	ENTH/VHS family protein	[more]
AT5G65180.2	2.2e-06	45.45	ENTH/VHS family protein	[more]
AT5G10060.1	1.4e-05	41.82	ENTH/VHS family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..74
None	No IPR available	COILS	Coil	Coil	coord: 79..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010539.1	Spg010539.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing